Biochem (Chapt.5)
Biochem (Chapt.5)
Biochem (Chapt.5)
Metabolism of Lipids
Lipids
Insoluble or immiscible
Triacylgerols
store and supply energy for metabolism.
membrane components
Metabolism of lipid
Fatty acids
esterified to some backbone molecules glycerol sphingosine cholesterol
Metabolism of Lipids
Fats
store in adipose tissue
Essential fatty acids: formation of membrane, regulation of chollesterol metabolism, precursors of eicosanoids (protaglandins, thromboxanes and leukotrienes. Necessary unsaturated fatty acids
Fat Facts
Dietary lipids are 90% triacylglycerols; also include cholesterol esters, phospholipids, essential unsaturated fatty acids; fat soluble vitamins (A,D,E,K)
1 and 3 FFA+2MG 1 and 2 FFA+ and 3 glycerol 2 1 and 2 and 3 3 Unsat FFA lysolecithin FFA+ glycerol FFA+DAG
bile acids (+) TAGs with med. chain FAs bile acids (+) PLs with unsat. Ca2+ (+) FA on position 2 apo CII (+) insulin (+) insulin (-) glucagon (+) Epineph. (+) TAGs in chylomicron or VLDL TAG stored in adipose cells
Absorption of Lipids
Metabolism of Triacylglyerols
LIPOLYSIS
Rate-determining step
Specific for removing first fatty acid Phosphorylated form is active
cell membrane
Triacylglycerol
HORMONES Epinephrine Glucagon ATP HSL-a active +
protein kinase A
ADP
Insulin +
protein phosphatase
RECEPTORS
inactive
ATP
+ = activation - = inhibition
HSL-b phosphodiesterase OH - caffeine (inactive form) theophylline AMP HSL = hormone-sensitive lipase
Pi
Figure 1. Hormonal activation of triacylglycerol (hormone-sensitive) lipase. Phosphorylation brings about activation to HSL-a.
lipolysis
Glycerols
to form dihydroxyacetone phosphate (DHAP)
Overproduction causes KETOSIS Exemplifies Aerobic Metabolism at its most powerful phase
CH3CH2CH2COOH
ATP PPi [CH3CH2CH2CO-AMP] HS-CoA AMP Acyl-CoA synthetase
CH3CH2CH2CO~SCoA
Fatty acyl CoA
Knoops Experiment
Diet (even chain) (odd chain)
CH2CH2CH2COO
Urine
CH2CH2COO
CH2COO
Phenylpyruvate Phenylacetate
COO
Benzoate Benzoate
On a per mole basis a typical fatty acid is 4 times more energy rich that a typical hexose
Sample calculation of energy produced for the cell via b-oxidation of palmitate (a C16 fatty acid):
Palmitoyl-CoA
Palmitoyl-CoA + 7CoA + 7FAD + 7NAD+ + 7H2O
8 Acetyl-CoA
7 FADH2 7 NADH + 7H+
80 ATP
10.5 ATP 17.5 ATP 108 ATP -2 ATP Total 106 ATP
Oleic Acid
C18:cis9 4 3 2 1
H H C=C CH3CH2CH2CH2CH2C CH2CH2CH2CH2CH2CH2CH2CO~SCoA
Linoleic
4
H H C=C CH2-CH2
CH3C~SCoA O
CH3C~SCoA O
CH3C~SCoA O
H H
H H
Round 4 starter
Enoyl-CoA isomerase
Round 5 starter
H H
Round 5 starter
beta 6
H H
FADH2
C=C
H C-CO~SCoA C H
Acyl-CoA dehydrogenase
C=C CO~SCoA CH2 Dead end
H H
New Strategy
C=C
H C-CO~SCoA C H
NADPH + H+
NADP+
beta 6
H
CH2 C
beta 6
C H
CH2CO~SCoA H C-CO~SCoA
What is Ketosis?
Acetone
CH3-C-CH3
Overflow
Excessive oxidation of fatty acids
Metabolic Problem
Faulty Carbohydrate Metabolism
Acetyl-CoA
major
minor
Ketone Bodies
Citrate
CH3C~SCoA O
CH3C~SCoA O HS-CoA
b-Ketothiolase
CH3CCH2C~SCoA O O
Acetoacetyl-CoA
CH3C~SCoA
HMG-CoA Synthase
OH OOC-CH2-C-CH2-C~SCoA CH3 O
b-hydroxy-b-methyl glutaryl-CoA
(HMG-CoA)
OH OOC-CH2-C-CH2-C~SCoA
HMG-CoA
CH3
Acetoacetate
CO2
CH3-C-CH3 Acetone
NAD+
OOC-CH2-CH-CH3 OH b-hydroxybutyrate
2.
3.
Ketone bodies produced by the liver are excellent fuels for a variety of extrahepatic tissues, especially during times of prolonged starvation. Reconversion of ketone bodies to acetylCoA inside the mitochondria provides metabolic energy.
Regulation of Ketogenesis
Feeding status
In the hungry state, higher glucagon and other lipolytic hormones trigger the lipolytic process in adipose tissue with the result that free fatty acids pass into the plasma for uptake by liver and other tissues. This promotes fatty acid oxidation and ketogenesis in the liver.
Regulation of Ketogenesis
Regulation of Ketogenesis
The fall in malonyl-CoA concentration can terminate the inhibition on carnitine acyltransferase I, such that long-chain fatty acids can be transported through the inner mitochondrial membrane to the enzymes of fatty acid oxidation and ketogenesis. This may happen during a hungry state. In contrast, administration of food after a fast, or of insulin to the diabetic subject, reduces plasma free fatty acid concentrations and increases liver concentration of malonyl-CoA, this will inhibit carnitine acyltransferase I and thus reverses the ketogenic process.
Primarily in the cytoplasm of the following tissues: liver, kidney, adipose, central nervous system and lactating mammary gland
LIPID BIOSYNTHESIS
Fatty acid biosynthesis-basic fundamentals Fatty acid biosynthesis-elongation and desaturation Triacylglycerols Phospholipids Cholesterol Cholesterol metabolism
Beta Oxidation
Cytosol Requires NADPH Acyl carrier protein D-isomer CO2 activation Keto saturated
Rule:
Fatty acid biosynthesis is a stepwise assembly of acetyl-CoA units (mostly as malonyl-CoA) ending with palmitate (C16 saturated)
3 Phases
Activation
Elongation
Termination
ACTIVATION
O
Cofactor
Biotin
NH C 2C 2C 2C 2C H H H H O S N H C 2C 2C 2 E ZY E HC 2 H H H N M HN
CH3C~SCoA O
ATP
ADP + Pi
-OOC-CH
HCO3-
Biocytin
2C~SCoA
LY S
O
O
O C N
O NH
CO2
active carbon
S
C 2C 2C 2C 2C H H H H O
Acetyl-CoA carboxylase
Carboxybiocytin
Acetyl-CoA Carboxylase
(6b6)
A: (185,000) Acyl Carrier protein b-ketoacyl-ACP synthase (condensing enzyme) b-ketoacyl-ACP reductase
B: (175,000) b-hydroxy-ACP dehydrase enoyl-ACP reductase palmitoyl thioesterase Fatty Acid Synthase Complex
H HO CH3
ACP
H HO CH3
Adenine
H
Coenzyme A
OH
Initiation
Overall Reaction
Malonyl-CoA + ACP
-OOC-CH 2C~S-
CH3C~SCoA O
ACP
+ HS-CoA
CO2
HS-CoA
ACP
CH3C-CH2C~SO O
NOTE: Malonyl-CoA carbons become new COOH end Nascent chain remains tethered to ACP CO2, HS-CoA are released at each condensation
b-Carbon
CH3C-CH2C~SACP
Elongation
O
O Reduction
b-Ketoacyl-ACP reductase
NADPH
D isomer
H CH3C-CH2C~SHO O
-H2O NADPH
Reduction
Enoyl-ACP reductase
CH3CH2CH2C~S- ACP O
TERMINATION
-KS
Transfer to Malonyl-CoA
Transfer to KS -S-ACP
-CH2CH2CH2C~S- ACP O
When C16 stage is reached, instead of transferring to KS, the transfer is to H2O and the fatty acid is released
O S-C-CH2-CH2-CH3
KS
Acetyl-CoA HS CoA-SH
Acetyl-CoAACP transacylase
NADP+
O S -C-CH3
KS -SH
KS
Initiation or priming
ACP
O S-C-CH3
SH Malonyl-CoA
Malonyl-CoACoA-SH ACP transacylase
OH
S
C=O CH2 C=O CH3 CO2
Elongation
Overall Reactions
Acetyl-CoA + 7 malonyl-CoA + 14NADPH + 14H+ 7H + Palmitate + 7CO2 + 14NADP+ + 8 HSCoA + 6H2O
8 Acetyl-CoA + 14NADPH + 7H+ + 7ATP Palmitate + 14NADP+ + 8 HSCoA + 6H2O + 7ADP + 7Pi
PROBLEM: Fatty acid biosynthesis takes place in the cytosol. Acetyl-CoA is mainly in the Mitochondria
acetyl-CoA
CH2COO HO-C-COO
HS-CoA
Acetyl-CoA
mitochondria
CH2COO HO-C-COO CH2COO Acetyl-CoA
CH2COO
Citrate lyase
COO C=O OAA Malate CH2 dehydrogenase COO
NADH
L-malate CO2
OAA
CO2 Pyr
Cytosol
Post-Synthesis Modifications
mitochondria
R-CH2CH2CH2CH2CH2C~SCoA O
Desaturation
Rules:
The fatty acid desaturation system is in the smooth membranes of the endoplasmic reticulum There are 4 fatty acyl desaturase enzymes in mammals designated 9 , 6, 5, and 4 fatty acyl-CoA desaturase Mammals cannot incorporate a double bond beyond 9; plants can. Mammals can synthesize long chain unsaturated fatty acids using desaturation and elongation
Triacylglycerol Synthesis
O O-C-R
O R-C-O
O O-C-R
Fatty acyl-CoA DHAP reduction to glycerol-PO4 or Glycerol kinase to glycerol-PO4 Two esterifications Diacylglycerol-PO4 intermediate Triacylglycerol
Triacylglycerol Biosynthesis
CH2OH ADP ATP CH2OH HO-C-H HO-C-H glycerol kinase CH2OP CH2OH glycerol-PO4
dehydrogenase Glycerol-PO4
NADH + NAD+
2 R-C~CoA
Phosphatidic acid
R-C~CoA
PO4
Question
Can a triacylglycerol (triglyceride) storage fat be synthesized entirely from glucose, i.e., every carbon in the fat comes from a sugar?
Answer: YES
Metabolism of Phospholipids
Phospholipid
phosphorous-containing lipids fatty acids, a phosphate group, and a simple organic molecule
Glycerolphospholipids (phosphoglycerides)
glycerol
Sphingolipid
sphingosine
Phospholipids
hydrophilic head , hydrophobic tail
Membrane
phospholipid bilayer
Glycerolphospholipids
Phosphatidic Acid
Ester linkage - or +
- or + Polar component
Phosphatidylcholine or lecithin
Eukaryotes
DHAP 2
FA-CoA
1 Glycerol-3-PO4
ATP
Glycerol
1-Acyl-DHAP
NADPH
1-Acyl-glycerol-3-PO4
Pi
CDP-diacylglycerol ethanolamine (CDP-ethanolamine) choline (CDP-choline) Serine (phosphatidylethanolamine) Glycerol (CDP-diacylglycerol) Inositol (CDP-diacylglycerol) Cardiolipin (phosphatidylglycerol)
N2 H N O
+
O O
O O C2 H O H O
H N C 2C 2 O P O P H H 3
O H
Pancreas
primary organ involved in sensing the organisms dietary and energetic states.
Low blood glucose stimulates the secretion of glucagon Elevated blood glucose calls for the secretion of insulin
Affected by phosphorylation
glucagon or epinephrine
decreased activity of ACC by phosphorylation
insulin
increases the synthesis of triacylglycerols
EICOSANOID FACTS
20-carbon compounds Include prostaglandins, prostacyclins, thromboxanes, leukotrienes
The Actions of Prostaglandins and Leukotrienes a. the inflammatory response involving primarily the joints (rheumatoid arthritis) and skin (psoriasis); the production of pain and fever; the regulation of blood pressure (vaso-constrictors/dilators) and blood clotting (platelet function); decreased gastric acid secretion (prostacyclins may be an ideal way to control the symptoms of peptic ulcer, but prostanoid synthesis inhibitors, like aspirin, increase acid secretion causing peptic ulcer); the control of several reproductive functions such as the induction of labor and delivery - this has led to the use of PGF2 as a mid-trimester abortifacient drug or as a labor-inducing agent; the regulation of the sleep/wake cycle; hypersensitivity allergic reactions (a primary action of leukotrienes).
b. c.
d.
e.
f. g.
metabolism
Arachidonic acid esterification
Zyflo
Cyclooxygenase (COX)
Lipooxygenase (LOX) Leukotrienes (Linear product) Zyflo competes with AA for binding
Aspirin inhibits irreversibly Indomethacin forms a salt bridge in the binding site Ibuprofen competes for substrate binding
Figure 1. Liberation of arachidonic acid and its metabolism to prostaglandins/ thromboxanes or to leukotrienes
LEUKOTRIENE FACTS
leukotriene synthesis inhibited by Zyflo, a lipooxygenase inhibitor leukotriene action blocked by accolate, a receptor antagonist peptidoleukotrienes: leukotrienes with short peptides added components of slow reacting substances of anaphylaxis (SRS-A) anaphylaxis violent (potentially fatal) allergic reaction 10,000 times more potent than histamine SRS-A released from lung following immunological stress SRS-A contract smooth muscle causing constriction of bronchi implicated in hypersensitivity reaction such as insect sting
X
PGG2 2GSH
GSSG
PGH2 central intermediate (Head of pathway)
COOH O O C CH3 O C CH3 Cyclooxygenase O (active) C O 3 CH O C CH3 O O C CH3 CH2 C C 3 3 O CH CH COOH OH Ser
Metabolism of Cholesterols
Functions of cholesterol. Important cell membrane component. Precursor for 3 biologically active compounds. Bile. Steroid hormones. Vitamin D. Disease implications. Cardiovascular disease. Diet control and synthesis manipulation = < heart disorders.
Disease implications.
Gall stones. Steroidogenic enzyme deficiency. Meat. Eggs. Dairy products. De novo liver synthesis.
Source of cholesterol.
Cholesterol Synthesis
O C SCoA
hydroxymethylglutaryl-CoA
Hydroxymethylglutaryl-coenzyme A (HMG-CoA) is the precursor for cholesterol synthesis. HMG-CoA is also an intermediate on the pathway for synthesis of ketone bodies from acetyl-CoA.
The enzymes for ketone body production are located in the mitochondrial matrix.
HMG-CoA destined for cholesterol synthesis is made by equivalent, but different, enzymes in the cytosol.
O CH2 C SCoA
acetyl-CoA
H3 C
hydroxymethylglutaryl-CoA
HMG-CoA is formed by condensation of acetyl-CoA & acetoacetyl-CoA, catalyzed by HMG-CoA Synthase. HMG-CoA Reductase catalyzes production of mevalonate from HMG-CoA.
The carboxyl of HMG that is in ester linkage to the CoA thiol is reduced to an aldehyde, and then to an alcohol. NADPH serves as reductant in the 2-step reaction. Mevaldehyde is thought to be an active site intermediate, following the first reduction and release of CoA.
HO C H2C
C O
C O
mevalonate
HMG-CoA Reductase is an integral protein of endoplasmic reticulum membranes. The catalytic domain of this enzyme remains active following cleavage from the transmembrane portion of the enzyme. The HMG-CoA Reductase reaction, in which mevalonate is formed from HMG-CoA, is ratelimiting for cholesterol synthesis. This enzyme is highly regulated and the target of pharmaceutical intervention.
Mevalonate is phosphorylated by 2 sequential Pi transfers from ATP, yielding the pyrophosphate derivative.
HO C H2C
C O
mevalonate
2 ATP (2 steps) 2 ADP O CH2 O P O ATP ADP + Pi O CH2 CH2 O P O O O P O O O O P O O
HO C H2C
CH3 CH2
C O
5-pyrophosphomevalonate
CO2
CH3 C H2C
isopentenyl pyrophosphate
CH3
Isopentenyl pyrophosphate is the first of several compounds in the pathway that are referred to as isoprenoids, by reference to the compound isoprene.
C H2C C H2
H2 C O
O P O O
O P O O
isopentenyl pyrophosphate
isoprene
isopentenyl pyrophosphate
dimethylallyl pyrophosphate
Isopentenyl Pyrophosphate Isomerase inter-converts isopentenyl pyrophosphate & dimethylallyl pyrophosphate. Mechanism: protonation followed by deprotonation.
Condensation Reactions
Prenyl Transferase catalyzes head-to-tail condensations:
Dimethylallyl pyrophosphate & isopentenyl pyrophosphate react to form geranyl pyrophosphate. Condensation with another isopentenyl pyrophosphate yields farnesyl pyrophosphate. Each condensation reaction is thought to involve a reactive carbocation formed as PPi is eliminated.
O P O O
dimethylallyl pyrophosphate
isopentenyl pyrophosphate
O O O P O O CH2 CH2 O P O O O P O O O P O CH3
CH3 C CH CH2 O
geranyl pyrophosphate
H2C PPi CH3 H3C C CH CH2 CH2 CH3 C CH CH2 CH2
isopentenyl pyrophosphate
CH3 C CH CH2 O O P O O O P O O
farnesyl pyrophosphate
CH3
O P O O
O P O O
2 H3C
2 farnesyl pyrophosphate
NADP+ NADPH
H+
O2
H2O
HO
squalene
2,3-oxidosqualene
lanosterol
Squalene Synthase: Head-to-head condensation of 2 farnesyl pyrophosphate, with reduction by NADPH, yields squalene.
NADP+ NADPH
H+
O2
H2O
HO
squalene
2,3-oxidosqualene
lanosterol
Squaline epoxidase catalyzes conversion of squalene to 2,3-oxidosqualene. This mixed function oxidation requires NADPH as reductant & O2 as oxidant. One O atom is incorporated into substrate (as the epoxide) & the other O is reduced to water.
Squalene Oxidocyclase catalyzes a series of electron shifts, initiated by protonation of the epoxide, resulting in cyclization.
H+
HO
2,3-oxidosqualene
lanosterol
Structural studies of a related bacterial enzyme have confirmed that the substrate binds at the active site in a conformation that permits cyclization with only modest changes in position as the reaction proceeds. The product is the sterol lanosterol.
19 steps
HO HO
lanosterol
cholesterol
Conversion of lanosterol to cholesterol involves 19 reactions, catalyzed by enzymes in ER membranes. Additional modifications yield the various steroid hormones or vitamin D. Many of the reactions involved in converting lanosterol to cholesterol and other steroids are catalyzed by members of the cytochrome P450 enzyme superfamily.
Long-term regulation is by varied formation and degradation of HMG-CoA Reductase and other enzymes of the pathway for synthesis of cholesterol.
Degradation of HMG-CoA Reductase is stimulated by cholesterol, oxidized derivatives of cholesterol, mevalonate, & farnesol (dephosphorylated farnesyl pyrophosphate).
HMG-CoA Reductase includes a transmembrane sterol-sensing domain that has a role in activating degradation of the enzyme via the proteasome (proteasome to be discussed later).
Long-term regulation is by varied formation and degradation of HMG-CoA Reductase and other enzymes of the pathway for synthesis of cholesterol.
Degradation of HMG-CoA Reductase is stimulated by cholesterol, oxidized derivatives of cholesterol, mevalonate, & farnesol (dephosphorylated farnesyl pyrophosphate).
HMG-CoA Reductase includes a transmembrane sterol-sensing domain that has a role in activating degradation of the enzyme via the proteasome (proteasome to be discussed later).
Lipid transport
triacylglycerides, cholesterol, phospholipids
dietary lipid transport chylomicron endogenous lipid transport (VLDL, IDL, LDL, HDL)
Packaged into chylomicron Released into lymphatic system and then via capillaries to blood stream chylomicron acted upon by lipases on cell walls of capillaries in tissues
energy production
FFA taken up by tissues reconversion to TAGs in adipocytes for storage hormone sensitive lipases
FFA released to circulatory system and combine with albumin for delivery to tissues
Triacylglycerides (TAGs) + cholesterol (Chol) are nonpolar molecules insoluble in H2O TAG + Chol must be packaged within a polar shell in order to be transported through the blood to the various tissues This is accomplished by combining nonpolar lipids w/ amphipathic lipids (a polar water-soluble terminal group attached to an H2O -insoluble hydrocarbon chain)
apolipoproteins
Provide structural stability to Lp
Act as cofactors for enzymes involved in plasma lipid and Lp metabolism
Serve as ligands for interaction w/Lp receptors that help determine disposition of individual particles
Chylomicrons, remnants Chylomicrons, VLDL, IDL, HDL HDL, chylomicrons HDL, chylomicrons
Secretion of chylomicrons from intestine; lacks LDLR binding domain of Apo B-100 Ligand for binding of IDL & remnants to LDLR and LRP Major structural protein of HDL 2) Activator of LCAT
1)
Unknown
Apo C-I
Apo C-II
Apo C-III
Modulator of hepatic uptake of VLDL and IDL (also involved in activation of LCAT)
Activator of LPL Inhibitor of LPL activity
Lipoprotein Structure
Lipoproteins
hydrophobic core (TAGS, cholesterol esters) hydrophilic surface (P-lipids, cholesterol, and apolipoproteins)
Function
transport of lipids in blood
Types of lipoproteins
(classified according to density) very low density (VLDL) intermediate density (IDL) low density (LDL) high density (HDL) Protein content increase, lipid decreases as density increases.
85% Chylomicron 2%
8%
LDL HDL 33%
nm
Lipoproteins
Chylomicron:
85% TAG, 4% chol., 8% protein
formed in intestinal epithelial cells deliver exogenous TAGS to tissue 80 -500nm ApoCII activates lipases in capillary cell walls releasing FFA to tissue chylomicron remnants return to liver where they bind to ApoE receptor and are taken up 1/2 life in blood - 4-5 minutes
VLDL:
50% TAGs, 22% choles., 10% protein
30 -100 nm formed in liver deliver endogenous lipids to other tissues (mainly muscle and fat cells) ApoCII activates lipases in capillary cell walls releasing FFA to tissue converted to IDLs and LDL as lipids are released
Lipoproteins
IDL: (31% TAGs, 29% choles., 18% protein) formed from VLDLs as lipids removed some IDLs return to liver rest converted to LDLs by further removal of lipids
LDL: bad cholesterol 10% TAGs, 45% choles., 25% protein 25 - 30 nm formed as lipids removed from VLDLs and IDLs. all apolipoproteins lost except ApoB100 bind to LDL receptor via ApoB100 and taken up by endocytosis by hepatic and other tissues (50-75% taken up by liver). Primary mode of cholesterol delivery to tissues. Synthesis of LDL receptor is inhibited by high levels of intracellular cholesterol and stimulated by low levels of cholesterol. Therefore, cholesterol uptake is closely matched to intracellular cholesterol levels.
Lipoproteins
HDL: good cholesterol
8% TAGs, 30% choles., 33% protein 7.5 - 10 nm formed in liver scavenge cholesterol from cell surfaces and other lipoproteins and deliver it to liver. Convert cholesterol to cholesterol ester bind to scavenger receptor on liver cell surface - cholesterol esters taken up and HDLs released and reenter circulation.
Liver
Triacylglycerols cholesterol Cholesterol esters
HDL chylomicron
VLDLs
LDLs
Triacylglycerols FFA monoacylglycerols Cholesterol Cholesterol esters
HDLs
Peripheral tissues
Distribution of endogenous lipids The Exogenous Pathway Liver Intestine Dietary lipids
chylomicron
Chylomicron remnants
Peripheral tissues
VLDLs IDLs
LDLR/ApoE LDLR/ApoB100 LPLs activated by ApoCII
LDLs
Triacylglycerols FFA monoacylglycerols Cholesterol Ester Cholesterol
Peripheral tissues
Distribution of endogenous lipids The HDL Pathways Transport of excess cholesterol from peripheral tissues back to liver for excretion in bile HDLs act as acceptors for excess chol, Apo, PL derived from CM, VLDL and LDL HDLs synthesized by both liver and intestine
uptake of cholesterol
HDL
VLDLs IDLs
CEs
LDLs
Triacylglycerols FFA monoacylglycerols
TAGs
Peripheral tissues