Polymorph Is M
Polymorph Is M
Polymorph Is M
1
Department of Neurosciences, University of Pisa, Pisa, Italy
Department of Human and Environmental Sciences, University of Pisa, Pisa, Italy
3
Scientific Institute Stella Maris, Calambrone (Pisa), Italy
How to cite this article: Coppede` F, Colognato R, Bonelli A, Astrea G, Bargagna S, Siciliano G, Migliore L. 2007.
Polymorphisms in folate and homocysteine metabolizing genes and chromosome damage in mothers of Down
syndrome children. Am J Med Genet Part A 143A:20062015.
INTRODUCTION
binucleated micronucleated (BNMN) cells and chromosome 13 and 21 malsegregation events in the MDS
group compared to the control group, indicating that
MDS are more prone to chromosome damage than
controls, and that this tendency to chromosome
damage is observable even in somatic cells, such as
peripheral lymphocytes [Migliore et al., 2006].
2007
2008
polymorphisms was performed according to Coppede` et al. [2006]. Briefly the MTHFR 677C > T
polymorphism was genotyped by amplifying a 198bp product using the Forward: 50 -TGA AGGAGAAGGTGTCTGCGGGA-30 and the Reverse: 50 AGGACGGTGCGGTGAGAGTG-30 primers; digestion with HinfI (Fermentas, Milan, Italy), resulted in
175- and 23-bp products for the 677T allele, and in a
198-bp undigested product for the 677C allele.
For the analysis of the MTHFR 1298A > C polymorphism a 163-bp product was amplified using
the Forward: 50 -CTTTGGGGAGCTGAAGGACTACTAC-30 and the Reverse: 50 -CACTTTGTG ACCATTCCGGTTTG-30 primers, and digested with MboII
(Fermentas) resulting in 56-, 31-, 30-, 28-, and 18bp fragments for the 1298A allele, and 84-, 31-, 30-,
and 18-bp fragments for the 1298C allele.
Genotyping for the RFC-1 80G > A polymorphisms
was obtained by amplifying a 230-bp product using
the Forward: 50 -AGTGTCACCTTCGTCCC-30 and the
Reverse: 50 -TCCCGCGTGAAGTTCTTG-30 primers;
digestion with CfoI (Sigma, Milan, Italy) resulted in
three fragments of 125-, 68- and 37-bp, in the
presence of the 80G allele. The 80A allele produced
two fragments of 162- and 68-bp.
The genotyping protocol for the MTR 2756A > G
polymorphism was adapted from Skibola et al.
[2002]: a 211-bp product was amplified using
1.25 Units of Taq DNA polymerase (Invitrogen,
Milan, Italy), 10 pmol of each primer (Forward: 50 TGTTCCCAGCTGTTAGATGAAAATC-30 and Reverse:
50 -GATCCAAAGCCTTTTACACTCCTC-30 ), 0.15 mM of
each dNTP, 1.5 mM MgCl2, and 20 ng of genomic DNA
in a final volume of 25 ml. PCR conditions were
40 cycles of 30 sec at 948C, 30 sec at 608C, and 30 sec at
728C, preceded by an initial denaturation of 2 min
at 948C, and followed by a final extension of 7 min
at 728C. Two hours digestion with HaeIII (Sigma)
resulted in an undigested fragment of 211 bp, in
the presence of the 2756A allele. The 2756G
allele produced two fragments of 131- and 80-bp,
respectively.
All the digestion products were visualized after
electrophoresis on a 3% agarose gel containing ethidium bromide. To avoid genotyping errors control
samples from homozygous and heterozygous individuals, whose genotypes have been previously confirmed, were always included in the PCR/RFLP
procedures and analyzed on each gel. Moreover, two
replicates of the PCR/RFLP procedures followed by
independent readings and comparison were performed for 20% of our samples randomly chosen.
Cytokinesis-Block Micronucleus Assay (CBMN)
2009
Demographic characteristics of the study population are listed in Table I. The mean (SD) age of MDS
was 49.09 10.15 years, comparable with that of
control mothers 48.09 7.02.
Table I also shows the results obtained from the
CBMN assay. The binucleated micronucleated lymphocytes frequency lays within a range of 6.0
40.5%, with a mean of 17.13 8.31%, in MDS group;
instead, the control group shows a frequency range
between 4.0 and 21.0% with a mean of 10.28
4.53%. The mean frequency of BML in MDS is
clearly higher if compared to the control group; this
evidence is statistically significant by the MANOVA
analysis (P < 0.001) (Table I).
MTHFR 677C > T, MTHFR 1298A > C, RFC-1
80G > A, and MTR 2756A > G Gene Frequencies
MDS (n 34)
Controls (n 35)
49.09 10.15
11
11
12
17.13 8.31*
48.09 7.02
14
11
10
10.28 4.53
a
Frequency of micronucleated binucleated lymphocytes calculated analyzing 2,000 cells.
*MANOVA: P < 0.001, MDS versus controls.
2010
TABLE II. Distributions of Four Folate and Homocysteine Metabolic Enzyme Gene Polymorphisms and
Their Allele Frequencies in the Present Study
Polymorphism
MDS no.
Allele frequency
Controls no.
CC: 5
CT: 22
TT: 7
AA: 16
AC: 17
CC: 1
GG: 15
GA: 17
AA: 1
AA: 23
AG: 8
GG: 0
C: 0.47
T: 0.53
CC: 12
CT: 19
TT: 4
AA: 12
AC: 19
CC: 1
GG: 7
GA: 14
AA: 9
AA: 24
AG: 8
GG: 1
genotypes revealed that the MTHFR 677C > T genotype was the only significant contributor to the
BNMN frequency. Figure 1 shows the mean BNMN
frequencies in relation to the MTHFR 677C > T
genotypes in MDS and controls, separately. In both
groups a nonsignificant increment in the mean
BNMN frequency with the increasing number of the
MTHFR 677T allele is observable (Fig. 1); however
when data where collected together (MDS concontrols), a statistically significant correlation
between the frequency of BNMN and the MTHFR
677C > T genotypes was observed (P 0.038)
(Fig. 2). Figure 2 shows that in the total population
(MDS controls, 69 individuals) subjects with the CC
genotype for MTHFR 677 have a significantly lower
A: 0.72
C: 0.28
G: 0.71
A: 0.29
A: 0.87
G: 0.13
Allele frequency
C: 0.615
T: 0.385
A: 0.67
C: 0.33
G: 0.47
A: 0.53
A: 0.85
G: 0.15
FIG. 1. The mean frequency of binucleated micronucleated (BNMN) lymphocytes in relation to the MTHFR 677C > T genotypes in mothers of Down syndrome
individuals (MDS) and controls (Ctrl), separately. In both groups a nonsignificant increment in the mean BNMN frequency with the increasing number of the MTHFR
677T allele is observable, meaning that for each group MTHFR 677CC individuals have a lower mean damage than CT ones, and MTHFR 677CT individuals have a lower
mean damage than TT ones. However, for each of the MTHFR 677C > T genotypes MDS have an increased mean BNMN lymphocytes frequency than controls.
2011
FIG. 2. The mean frequency of binucleated micronucleated (BNMN) lymphocytes in relation to the MTHFR 677C > T genotypes in the total population under study
(mothers of Down syndrome individuals controls). A statistically significant increment in the mean BNMN frequency with the increasing number of the MTHFR 677T
allele is observable, meaning that MTHFR 677CC individuals have a lower mean damage than CT ones, and MTHFR 677CT individuals have a lower mean damage than
TT ones.
2012
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COPPEDE` ET AL.
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