An interactive web tool for quality control of DNA sequencing data
-
Updated
Aug 30, 2024 - Svelte
#
fastqc
Here are 57 public repositories matching this topic...
A quality control tool for FASTQ files written in rust
-
Updated
Aug 8, 2024 - Rust
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
picard samtools bwa-mem varscan bcftools bowtie2 trimgalore cutadapt fastqc freebayes fastp gatk4 trimmomatic gatk-bestpractices gatk-joint-variant-calling-workflow gatk-cnv gatk4-haplotypecaller
-
Updated
Jan 17, 2024 - Shell
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
-
Updated
May 16, 2024 - Rust
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
bash bioinformatics rna-seq genomics ngs gene-expression bioinformatics-pipeline alignment star quantification transcriptomics illumina rsem ngs-analysis fastqc spliced-alignment stringtie splice-aware
-
Updated
Nov 29, 2024 - Shell
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
-
Updated
Apr 9, 2016 - Jupyter Notebook
A simple fastp-MultiQC nextflow pipeline
-
Updated
Feb 2, 2023 - Nextflow
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
-
Updated
Mar 27, 2020 - Shell
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
bioinformatics quality-control mapping bioinformatics-pipeline multiqc star hisat2 rna-seq-analysis featurecounts rna-seq-mapping fastqc rna-seq-pipeline htseq-count rna-seq-qc rnaseqpipeline trimmomatic rna-seq-aligner
-
Updated
Mar 29, 2022 - R
Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.
-
Updated
Apr 2, 2022 - HTML
Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
-
Updated
Jan 18, 2021 - Shell
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
bioinformatics snakemake json-schema conda multiqc kallisto reproducible-workflows fastqc snakemake-workflow
-
Updated
Aug 23, 2019 - Python
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
-
Updated
Oct 19, 2021 - Python
Map and post-process your bams for SNP calling
reproducible-research bioinformatics-pipeline multiqc bwa whole-exome-sequencing snakemake-workflows fastqc gatk4
-
Updated
Mar 10, 2021 - Python
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
-
Updated
Apr 3, 2023 - Python
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
bash bioinformatics rna-seq pipeline genomics mapping next-generation-sequencing snp variant-calling transcriptomics illumina fastq reads differential-gene-expression fastqc
-
Updated
May 26, 2019 - Shell
Improve this page
Add a description, image, and links to the fastqc topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the fastqc topic, visit your repo's landing page and select "manage topics."