DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Official code repository for GATK versions 4 and up
Data intensive science for everyone.
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
A collection of awesome things regarding all omics.
Java utilities for Bioinformatics
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Tools for working with genomic and high throughput sequencing data.
A collection of Galaxy-related training material
SortMeRNA: next-generation sequence filtering and alignment tool
Annotation and Ranking of Structural Variation
UGENE is free open-source cross-platform bioinformatics software
A cool place to store your Hi-C
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
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