Aggregate results from bioinformatics analyses across many samples into a single report.
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
Test data for MultiQC.
A simple fastp-MultiQC nextflow pipeline
AlphaFold-based Protein Analysis Pipeline
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
A miniature example of a MultiQC plugin.
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
Map and post-process your bams for SNP calling
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
Generation Quality Controls Files for MSK-ACCESS
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
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