Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames (Q36333702)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26486724%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

title

Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames (English)

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27 February 2020

0 references

1

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27 February 2020

Bulak A Arpat

2

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27 February 2020

Violeta Castelo-Szekely

3

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27 February 2020

David Gatfield

5

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27 February 2020

author name string

Maykel Lopes

4

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27 February 2020

publication date

20 October 2015

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27 February 2020

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27 February 2020

volume

25

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27 February 2020

issue

12

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27 February 2020

page(s)

1848-1859

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The Circadian Protein BMAL1 Regulates Translation in Response to S6K1-Mediated Phosphorylation

27 February 2020

cites work

1 reference

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A circadian gene expression atlas in mammals: implications for biology and medicine

30 September 2017

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The race to decipher the top secrets of TOP mRNAs

30 September 2017

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DENR-MCT-1 promotes translation re-initiation downstream of uORFs to control tissue growth

30 September 2017

1 reference

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MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale.

30 September 2017

1 reference

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Circadian clocks and feeding time regulate the oscillations and levels of hepatic triglycerides

30 September 2017

1 reference

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In-vivo quantitative proteomics reveals a key contribution of post-transcriptional mechanisms to the circadian regulation of liver metabolism.

30 September 2017

1 reference

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Translational profiling of clock cells reveals circadianly synchronized protein synthesis

30 September 2017

1 reference

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Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.

30 September 2017

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30 September 2017

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Circadian clock NAD+ cycle drives mitochondrial oxidative metabolism in mice

30 September 2017

1 reference

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Assessing gene-level translational control from ribosome profiling

30 September 2017

1 reference

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Reinitiation and other unconventional posttermination events during eukaryotic translation

30 September 2017

1 reference

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The circadian clock coordinates ribosome biogenesis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles

30 September 2017

1 reference

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Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells

30 September 2017

1 reference

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Circadian Dbp transcription relies on highly dynamic BMAL1-CLOCK interaction with E boxes and requires the proteasome

30 September 2017

1 reference

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Crystal Structure of the Heterodimeric CLOCK:BMAL1 Transcriptional Activator Complex

30 September 2017

1 reference

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Mammalian iron metabolism and its control by iron regulatory proteins

30 September 2017

1 reference

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Central and peripheral circadian clocks in mammals

30 September 2017

1 reference

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Rev-erbα and Rev-erbβ coordinately protect the circadian clock and normal metabolic function

30 September 2017

1 reference

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Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Circadian clock protein BMAL1 regulates cellular senescence in vivo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Stoichiometric Relationship among Clock Proteins Determines Robustness of Circadian Rhythms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Flexible phase adjustment of circadian albumin D site-binding protein (DBP) gene expression by CRYPTOCHROME1

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Deaf1 isoforms control the expression of genes encoding peripheral tissue antigens in the pancreatic lymph nodes during type 1 diabetes

30 September 2017

1 reference

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

30 September 2017

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

30 September 2017

1 reference

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Diurnal cycle influences peripheral and brain iron levels in mice

30 September 2017

1 reference

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Circadian orchestration of the hepatic proteome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen

30 September 2017

1 reference

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Evolutionary conservation suggests a regulatory function of AUG triplets in 5'-UTRs of eukaryotic genes

30 September 2017

1 reference

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Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise

30 September 2017

1 reference

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PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Posttranslational mechanisms regulate the mammalian circadian clock

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

The orphan nuclear receptor LXRalpha is positively and negatively regulated by distinct products of mevalonate metabolism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

Ribosome profiling: new views of translation, from single codons to genome scale

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665006

22 September 2018

Identifiers

DOI

10.1101/GR.195404.115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26486724%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

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27 February 2020

PubMed publication ID

26486724

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26486724%20AND%20SRC:MED&resulttype=core&format=json