Chromosome organization and chromatin modification: influence on genome function and evolution (Q34545520)

2 August 2017

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title

Chromosome organization and chromatin modification: influence on genome function and evolution (English)

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2 August 2017

Holmquist GP

1

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2 August 2017

Ashley T

series ordinal

2

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2 August 2017

publication date

1 January 2006

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Cytogenetics and Genome Research

2 August 2017

published in

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2 August 2017

volume

114

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2 August 2017

issue

2

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2 August 2017

page(s)

96-125

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Isolation and initial characterization of a novel zinc finger gene, DNMT3L, on 21q22.3, related to the cytosine-5-methyltransferase 3 gene family

2 August 2017

cites work

1 reference

Start sites of bidirectional DNA synthesis at the human lamin B2 origin

21 January 2018

1 reference

Double-strand break repair: are Rad51/RecA--DNA joints barriers to DNA replication?

21 January 2018

1 reference

Genetic dissection of a mammalian replicator in the human beta-globin locus

21 January 2018

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The Chinese hamster dihydrofolate reductase replication origin beta is active at multiple ectopic chromosomal locations and requires specific DNA sequence elements for activity

21 January 2018

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Changed pattern of transcription and replication in polytene chromosomes of Drosophila melanogaster resulting from eu-heterochromatin rearrangement.

21 January 2018

1 reference

The small RNA profile during Drosophila melanogaster development

21 January 2018

1 reference

DNA replication and the nature of late replicating loci in the X-chromosome of Drosophila melanogaster

21 January 2018

1 reference

Correlation of meiotic events in testis sections and microspreads of mouse spermatocytes relative to the mid-pachytene checkpoint

21 January 2018

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Silencing of unpaired chromatin and histone H2A ubiquitination in mammalian meiosis

21 January 2018

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Inheritance of Polycomb-dependent chromosomal interactions in Drosophila

21 January 2018

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MicroRNAs: genomics, biogenesis, mechanism, and function

21 January 2018

1 reference

Genomic imprinting in mammals.

21 January 2018

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Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

21 January 2018

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Insulators and boundaries: versatile regulatory elements in the eukaryotic genome

21 January 2018

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ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex

21 January 2018

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Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

21 January 2018

1 reference

Localisation of human DNA polymerase kappa to replication foci

21 January 2018

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Misunderstandings about isochores. Part 1

21 January 2018

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Role for a bidentate ribonuclease in the initiation step of RNA interference

21 January 2018

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Chromosomal boundaries in S. cerevisiae.

21 January 2018

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Replication timing properties across the pseudoautosomal region boundary and cytogenetic band boundaries on human distal Xp.

21 January 2018

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DMC1: a meiosis-specific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression

21 January 2018

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From DNA structure to gene expression: mediators of nuclear compartmentalization and dynamics.

21 January 2018

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The mapping of DNA topoisomerase sites in vivo: a tool to enlight the functions of topoisomerases

21 January 2018

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Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

21 January 2018

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Dnmt3L and the establishment of maternal genomic imprints

21 January 2018

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Looping versus linking: toward a model for long-distance gene activation

21 January 2018

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ChIPs of the beta-globin locus: unraveling gene regulation within an active domain

21 January 2018

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Control of cell cycle arrest by the Mec1sc/Rad3sp DNA structure checkpoint pathway.

21 January 2018

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Retracted: The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure

21 January 2018

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ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones.

21 January 2018

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Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome

21 January 2018

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Chromosome imprinting and the mammalian X chromosome

21 January 2018

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RGS12TS-S localizes at nuclear matrix-associated subnuclear structures and represses transcription: structural requirements for subnuclear targeting and transcriptional repression.

21 January 2018

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Long-distance control of origin choice and replication timing in the human beta-globin locus are independent of the locus control region

21 January 2018

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DNA polymerase stabilization at stalled replication forks requires Mec1 and the RecQ helicase Sgs1.

21 January 2018

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Nuclear compartments and gene regulation.

21 January 2018

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Fourfold faster rate of genome rearrangement in nematodes than in Drosophila

21 January 2018

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Mechanisms of chromosome banding and implications for chromosome structure

21 January 2018

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DNA replication and the nuclear membrane

21 January 2018

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Telomere transitions in yeast: the end of the chromosome as we know it.

21 January 2018

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DNA replication occurs at discrete sites in pseudonuclei assembled from purified DNA in vitro.

21 January 2018

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Genetic modification of heterochromatic association and nuclear organization in Drosophila.

21 January 2018

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Large-scale chromosomal movements during interphase progression in Drosophila

21 January 2018

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Physical and functional association of SU(VAR)3-9 and HDAC1 in Drosophila

21 January 2018

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Origins of DNA replication that function in eukaryotic cells

21 January 2018

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Perturbation of nuclear architecture by long-distance chromosome interactions.

21 January 2018

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Identifying a single-copy DNA sequence associated with the expression of a heterochromatic gene, the light locus of Drosophila melanogaster.

21 January 2018

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Breaking through to the other side: silencers and barriers

21 January 2018

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Two steps in the assembly of complexes at yeast replication origins in vivo

21 January 2018

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Sequence of DNA replication in 277 R- and Q-bands of human chromosomes using a BrdU treatment

21 January 2018

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Mammalian MutS homologue 5 is required for chromosome pairing in meiosis

21 January 2018

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Structural dynamics of eukaryotic chromosome evolution

21 January 2018

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An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium

21 January 2018

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Position effect variegation in Drosophila: towards a genetics of chromatin assembly

21 January 2018

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Cloning of PBDX, an MIC2-related gene that spans the pseudoautosomal boundary on chromosome Xp.

21 January 2018

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Non-random position of the A-T rich DNA sequences in early embryos of Drosophila virilis

21 January 2018

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Evidence that a single replication fork proceeds from early to late replicating domains in the IgH locus in a non-B cell line

21 January 2018

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Relationship between nuclease-hypersensitive sites and meiotic recombination hot spot activity at the HIS4 locus of Saccharomyces cerevisiae

21 January 2018

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Activation of Replication Origins within Yeast Chromosomes

21 January 2018

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Conserved CTCF insulator elements flank the mouse and human beta-globin loci

21 January 2018

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A position effect on the time of replication origin activation in yeast

21 January 2018

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A yeast origin of replication is activated late in S phase

21 January 2018

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Matrix attachment regions and transcription units in a polygenic mammalian locus overlapping two isochores

21 January 2018

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Spatial organization of large-scale chromatin domains in the nucleus: a magnified view of single chromosome territories.

21 January 2018

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Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast.

21 January 2018

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Histone acetylation beyond promoters: long-range acetylation patterns in the chromatin world

21 January 2018

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A functional enhancer suppresses silencing of a transgene and prevents its localization close to centrometric heterochromatin.

21 January 2018

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Nuclear relocation of a transactivator subunit precedes target gene activation.

21 January 2018

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Locus control regions, chromatin activation and transcription

21 January 2018

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Nuclear organization of DNA replication initiation proteins in mammalian cells

21 January 2018

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A boundary of long-range G + C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary

21 January 2018

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Human pseudoautosomal boundary-like sequences: expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes.

21 January 2018

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Dicer is essential for formation of the heterochromatin structure in vertebrate cells

21 January 2018

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Integration of the cytogenetic map with the draft human genome sequence

21 January 2018

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Human DNA polymerase epsilon colocalizes with proliferating cell nuclear antigen and DNA replication late, but not early, in S phase

21 January 2018

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Functional elements in Drosophila melanogaster heterochromatin

21 January 2018

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Chromatin insulators and boundaries: effects on transcription and nuclear organization

21 January 2018

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A chromatin insulator determines the nuclear localization of DNA.

21 January 2018

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Nuclear structure and the three-dimensional organization of DNA

21 January 2018

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Temporal order of replication of Xenopus laevis 5S ribosomal RNA genes in somatic cells

21 January 2018

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Replication timing and transcriptional control: beyond cause and effect

21 January 2018

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The chromatin domain as a unit of gene regulation

21 January 2018

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Heterochromatin: new possibilities for the inheritance of structure

21 January 2018

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Heterochromatin and epigenetic control of gene expression

21 January 2018

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Regulation of heterochromatin by histone methylation and small RNAs

21 January 2018

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Establishment and maintenance of a heterochromatin domain

21 January 2018

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RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast

21 January 2018

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A variable domain of delayed replication in FRAXA fragile X chromosomes: X inactivation-like spread of late replication

21 January 2018

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Ataxia telangiectasia mutated (ATM) and ATM and Rad3-related protein exhibit selective target specificities in response to different forms of DNA damage

21 January 2018

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Identification and characterization of a family of mammalian methyl-CpG binding proteins

21 January 2018

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The positioning and dynamics of origins of replication in the budding yeast nucleus.

21 January 2018

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Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores

21 January 2018

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Chromatin self-organization by mutation bias

21 January 2018

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Replication time of interspersed repetitive DNA sequences in hamsters.

21 January 2018

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Telomere replication, kinetochore organizers, and satellite DNA evolution

21 January 2018

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Mobile genetic elements, chiasmata, and the unique organization of beta-heterochromatin

21 January 2018

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Arrangement of centromeres in mouse cells

21 January 2018

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The level of expression of the rat growth hormone gene in liver tumor cells is at least eight orders of magnitude less than that in anterior pituitary cells

21 January 2018

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The major shifts of human duplicated genes

21 January 2018

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Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells

21 January 2018

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Cyclin-dependent kinase and initiation at eukaryotic origins: a replication switch?

21 January 2018

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Intense and highly localized gene conversion activity in human meiotic crossover hot spots

21 January 2018

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Cloned mouse lymphocytes permit analysis of somatic mutations that occur in vivo

21 January 2018

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Functional characterization of a novel Ku70/80 pause site at the H19/Igf2 imprinting control region

21 January 2018

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Where the crossovers are: recombination distributions in mammals.

21 January 2018

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Induction of DNA methylation and gene silencing by short interfering RNAs in human cells

21 January 2018

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Meiosis-specific DNA double-strand breaks are catalyzed by Spo11, a member of a widely conserved protein family

21 January 2018

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A mouse homolog of the Saccharomyces cerevisiae meiotic recombination DNA transesterase Spo11p.

21 January 2018

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Site-specific and temporally controlled initiation of DNA replication in a human cell-free system

21 January 2018

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Tumor reversion: Correction of malignant behavior by microenvironmental cues

21 January 2018

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Ikaros DNA-binding proteins direct formation of chromatin remodeling complexes in lymphocytes

21 January 2018

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Meiotic chromosome metabolism: one view

21 January 2018

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Long-range control of gene expression: emerging mechanisms and disruption in disease

21 January 2018

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Intermittent DNA synthesis and periodic expression of enzyme activity in the cell cycle of WI-38

21 January 2018

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Human genome organization: Alu, LINES, and the molecular structure of metaphase chromosome bands

21 January 2018

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Initiation of genetic recombination and recombination-dependent replication

21 January 2018

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Chromosome distribution of intracisternal A-particle sequences in the Syrian hamster and mouse

21 January 2018

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21 January 2018

DNA replication fidelity

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Functions of human DNA polymerases eta, kappa and iota suggested by their properties, including fidelity with undamaged DNA templates.

21 January 2018

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New types of mouse centromeric satellite DNAs

21 January 2018

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An epigenetic road map for histone lysine methylation

21 January 2018

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Properties of unpaired DNA required for efficient silencing in Neurospora crassa

21 January 2018

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The human beta-globin locus control region

21 January 2018

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Chromatin modification and epigenetic reprogramming in mammalian development

21 January 2018

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Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification

21 January 2018

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Meiotic recombination hotspots.

21 January 2018

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The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences

21 January 2018

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X-chromosome inactivation: a repeat hypothesis

21 January 2018

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LINE-1 elements and X chromosome inactivation: a function for "junk" DNA?

21 January 2018

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Spatial and temporal dynamics of DNA replication sites in mammalian cells

21 January 2018

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Association of chromosome territories with the nuclear matrix. Disruption of human chromosome territories correlates with the release of a subset of nuclear matrix proteins

21 January 2018

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The immunoglobulin heavy chain locus control region increases histone acetylation along linked c-myc genes

21 January 2018

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Activity of the c-myc replicator at an ectopic chromosomal location

21 January 2018

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Individual interphase chromosome domains revealed by in situ hybridization

21 January 2018

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X-inactivation by chromosomal pairing events

21 January 2018

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Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees.

21 January 2018

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RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe

21 January 2018

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The organization of interphase chromatin in drosophilidae: the self adhesion of chromatin containing the same DNA sequences

21 January 2018

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Comparative analysis of the functional genome architecture of animal and plant cell nuclei

21 January 2018

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Determinator-inhibitor pairs as a mechanism for threshold setting in development: a possible function for pseudogenes

21 January 2018

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Rad51 immunocytology in rat and mouse spermatocytes and oocytes

21 January 2018

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Dynamic properties of nuclear lamins: lamin B is associated with sites of DNA replication

21 January 2018

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Small interfering RNA-induced transcriptional gene silencing in human cells

21 January 2018

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Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

21 January 2018

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Defining the ancestral karyotype of all primates by multidirectional chromosome painting between tree shrews, lemurs and humans

21 January 2018

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Heterogeneous gene distribution reflects human genome complexity as detected at the cytogenetic level.

21 January 2018

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Lengths of chromosomal segments conserved since divergence of man and mouse

21 January 2018

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Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly

21 January 2018

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Epigenetic factors affecting mating type expression in certain ciliates

21 January 2018

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Beta-heterochromatin in mammals: evidence from studies in Microtus agrestis based on the extensive accumulation of L1 and non-L1 retroposons in the heterochromatin

21 January 2018

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Copy and paste: the impact of a new non-L1 retroposon on the gonosomal heterochromatin of Microtus agrestis

21 January 2018

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The structure and function of yeast ARS elements

21 January 2018

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Organization of DNA into foci during replication

21 January 2018

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Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries

21 January 2018

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RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing

21 January 2018

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The promise of comparative genomics in mammals

21 January 2018

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Isolation and characterization of Suv39h2, a second histone H3 methyltransferase gene that displays testis-specific expression

21 January 2018

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Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences

21 January 2018

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Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

21 January 2018

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Chromosome heterozygosity and de novo chromosome rearrangements in mammalian interspecies hybrids

21 January 2018

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Duration of spermatogenesis in the mouse and timing of stages of the cycle of the seminiferous epithelium

21 January 2018

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Fidelity and processivity of DNA synthesis by DNA polymerase kappa, the product of the human DINB1 gene

21 January 2018

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Competitive inactivation of a double-strand DNA break site involves parallel suppression of meiosis-induced changes in chromatin configuration

21 January 2018

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Mechanisms of chromosome banding. III. Similarity between G-bands of mitotic chromosomes and chromomeres of meiotic chromosomes.

21 January 2018

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Higher order structure of chromosomes

21 January 2018

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Epigenetic dynamics of imprinted X inactivation during early mouse development

21 January 2018

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Radioresistant DNA synthesis: an intrinsic feature of ataxia telangiectasia

21 January 2018

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Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery

21 January 2018

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Imprinted chromosomal regions of the human genome display sex-specific meiotic recombination frequencies

21 January 2018

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Meiosis in Carriers of Heteromorphic Bivalents: Sex Differences and Implications for Male Fertility

21 January 2018

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Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability

21 January 2018

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Partitioning and plasticity of repressive histone methylation states in mammalian chromatin

21 January 2018

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Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution

21 January 2018

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Campomelic dysplasia translocation breakpoints are scattered over 1 Mb proximal to SOX9: evidence for an extended control region

21 January 2018

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The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans.

21 January 2018

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Transposable elements are stable structural components of Drosophila melanogaster heterochromatin

21 January 2018

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Meiotic prophase arrest with failure of chromosome synapsis in mice deficient for Dmc1, a germline-specific RecA homolog

21 January 2018

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Presynaptic association of Rad51 protein with selected sites in meiotic chromatin

21 January 2018

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Recombinant human DNA (cytosine-5) methyltransferase. I. Expression, purification, and comparison of de novo and maintenance methylation

21 January 2018

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Replication dynamics of the yeast genome.

21 January 2018

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How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila

21 January 2018

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Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains

21 January 2018

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Mutation of a meiosis-specific MutS homolog decreases crossing over but not mismatch correction

21 January 2018

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DNA-dependent formation of the synaptinemal complex at meiotic prophase

21 January 2018

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Correlations between isochores and chromosomal bands in the human genome.

21 January 2018

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Identification of the gene-richest bands in human prometaphase chromosomes.

21 January 2018

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Nuclear organization of mammalian genomes. Polar chromosome territories build up functionally distinct higher order compartments

21 January 2018

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A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication

21 January 2018

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MSH4 acts in conjunction with MLH1 during mammalian meiosis

21 January 2018

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Chromosome banding in Amphibia. VI. BrdU-replication patterns in anura and demonstration of XX/XY sex chromosomes in Rana esculenta

21 January 2018

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Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

21 January 2018

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Inversions and gene order shuffling in Anopheles gambiae and A. funestus.

21 January 2018

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DNase I-hypersensitive sites and transcription factor-binding motifs within the mouse E beta meiotic recombination hot spot

21 January 2018

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Developmental regulation of DNA replication timing at the human beta globin locus.

21 January 2018

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The pattern of replication at a human telomeric region (16p13.3): its relationship to chromosome structure and gene expression

21 January 2018

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Reciprocal chromosome painting shows that genomic rearrangement between rat and mouse proceeds ten times faster than between humans and cats

21 January 2018

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Cell cycle control of DNA replication.

21 January 2018

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High-Resolution Analysis of DNA Replication Domain Organization across an R/G-Band Boundary

21 January 2018

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Analysis of the replication pattern of Chinese hamster chromosomes using 5-bromodeoxyuridine suppression of 33258 Hoechst fluorescence

21 January 2018

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Long-range nucleosome ordering is associated with gene silencing in Drosophila melanogaster pericentric heterochromatin

21 January 2018

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The double-strand-break repair model for recombination

21 January 2018

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Genomic imprinting recapitulated in the human beta-globin locus

21 January 2018

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A structural basis for variegating position effects

21 January 2018

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Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex.

21 January 2018

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21 January 2018

Nucleosome positioning

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The Drosophila heterochromatic gene encoding poly(ADP-ribose) polymerase (PARP) is required to modulate chromatin structure during development

21 January 2018

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Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei

21 January 2018

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RNAi protects the Caenorhabditis elegans germline against transposition

21 January 2018

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The beta heterochromatic sequences flanking the I elements are themselves defective transposable elements.

21 January 2018

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RNAi-mediated targeting of heterochromatin by the RITS complex

21 January 2018

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Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

21 January 2018

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Activation of silent replication origins at autonomously replicating sequence elements near the HML locus in budding yeast

21 January 2018

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Regulated chromosomal DNA replication in the absence of a nucleus

21 January 2018

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Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions

21 January 2018

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Initial sequencing and comparative analysis of the mouse genome

21 January 2018

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Segregation of transcription and replication sites into higher order domains

21 January 2018

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Heterochromatin and gene expression in Drosophila

21 January 2018

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Assembly and propagation of repressed and depressed chromosomal states

21 January 2018

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Comparative painting of mammalian chromosomes

21 January 2018

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Evolutionary dynamics of transposable elements at the centromere

21 January 2018

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Replication timing of the human genome

21 January 2018

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Differential replication timing of X-linked genes measured by a novel method using single-nucleotide primer extension

21 January 2018

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Replication focus-forming activity 1 and the Werner syndrome gene product

21 January 2018

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Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype

21 January 2018

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Human centromere protein A (CENP-A) can replace histone H3 in nucleosome reconstitution in vitro

21 January 2018

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The mouse RecA-like gene Dmc1 is required for homologous chromosome synapsis during meiosis

21 January 2018

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Position-effect variegation and intercalary heterochromatin: a comparative study.

21 January 2018

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Organization of early and late replicating DNA in human chromosome territories

21 January 2018

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The distribution of CpG islands in mammalian chromosomes

21 January 2018

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Cell cycle behavior of human HP1 subtypes: distinct molecular domains of HP1 are required for their centromeric localization during interphase and metaphase

21 January 2018

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A unification of mosaic structures in the human genome

21 January 2018

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Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing

21 January 2018

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Gene Activity dependent on Chromosome Synapsis in the Polytene Chromosomes of Drosophila melanogaster

21 January 2018

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Assignment of aberration breakpoints in banded chromosomes

21 January 2018

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21 January 2018

Identifiers

DOI

10.1159/000093326

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2 August 2017

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