Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. (Q34446736)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25378249%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks (English)

1 reference

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22 February 2020

1 reference

2

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22 February 2020

Xuerui Yang

3

1 reference

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22 February 2020

Hyunjae (Ryan) Kim

7

1 reference

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22 February 2020

Elena G Seviour

8

1 reference

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22 February 2020

Prahlad T. Ram

13

1 reference

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22 February 2020

Andrea Califano

16

1 reference

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22 February 2020

15

Gordon B Mills

1 reference

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22 February 2020

author name string

Hua-Sheng Chiu

1

1 reference

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22 February 2020

Wei-Jen Chung

4

1 reference

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22 February 2020

Archana Iyer

6

1 reference

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22 February 2020

Zijun Luo

9

1 reference

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22 February 2020

Vasudha Sehgal

10

1 reference

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22 February 2020

Tyler Moss

11

1 reference

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22 February 2020

Yiling Lu

12

1 reference

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22 February 2020

José Silva

14

1 reference

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22 February 2020

Pavel Sumazin

17

1 reference

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22 February 2020

Alberto Ambesi-Impiombato

5

1 reference

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22 February 2020

publication date

5 November 2014

1 reference

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22 February 2020

1 reference

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22 February 2020

volume

25

1 reference

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22 February 2020

issue

2

1 reference

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22 February 2020

page(s)

257-267

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MicroRNA binding sites in the coding region of mRNAs: extending the repertoire of post-transcriptional gene regulation

22 February 2020

cites work

1 reference

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Widespread context dependency of microRNA-mediated regulation

6 July 2018

1 reference

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The multilayered complexity of ceRNA crosstalk and competition

6 July 2018

1 reference

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miR-30 as a tumor suppressor connects EGF/Src signal to ERG and EMT.

6 July 2018

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Context-specific microRNA function in developmental complexity.

6 July 2018

1 reference

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MiRmap: comprehensive prediction of microRNA target repression strength.

6 July 2018

1 reference

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Comprehensive molecular portraits of human breast tumours

6 July 2018

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An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma

6 July 2018

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microRNA-101 is a potent inhibitor of autophagy

6 July 2018

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MicroRNAs can generate thresholds in target gene expression

6 July 2018

1 reference

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A Technical Assessment of the Utility of Reverse Phase Protein Arrays for the Study of the Functional Proteome in Non-microdissected Human Breast Cancers

6 July 2018

1 reference

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Kinome siRNA-phosphoproteomic screen identifies networks regulating AKT signaling

6 July 2018

1 reference

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miRWalk – Database: Prediction of possible miRNA binding sites by “walking” the genes of three genomes

6 July 2018

1 reference

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miRTarBase: a database curates experimentally validated microRNA-target interactions

6 July 2018

1 reference

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MiRNA–miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features

6 July 2018

1 reference

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miR-145-dependent targeting of Junctional Adhesion Molecule A and modulation of fascin expression are associated with reduced breast cancer cell motility and invasiveness

6 July 2018

1 reference

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Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

6 July 2018

1 reference

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Mammalian microRNAs predominantly act to decrease target mRNA levels

6 July 2018

1 reference

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TargetSpy: a supervised machine learning approach for microRNA target prediction

6 July 2018

1 reference

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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

6 July 2018

1 reference

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Protein lysate microarray analysis to identify microRNAs regulating estrogen receptor signaling in breast cancer cell lines

6 July 2018

1 reference

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6 July 2018

1 reference

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Serial dilution curve: a new method for analysis of reverse phase protein array data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

miRecords: an integrated resource for microRNA-target interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

MicroRNA-298 and microRNA-328 regulate expression of mouse beta-amyloid precursor protein-converting enzyme 1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

The database of experimentally supported targets: a functional update of TarBase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

6 July 2018

1 reference

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The role of site accessibility in microRNA target recognition

6 July 2018

1 reference

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Inference of miRNA targets using evolutionary conservation and pathway analysis

6 July 2018

1 reference

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A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

6 July 2018

1 reference

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TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

6 July 2018

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

6 July 2018

1 reference

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MicroRNA expression profiles classify human cancers

6 July 2018

1 reference

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MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies

6 July 2018

1 reference

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

6 July 2018

1 reference

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6 July 2018

Human MicroRNA targets

1 reference

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Fast and effective prediction of microRNA/target duplexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

Functional microRNA targets in protein coding sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

A wide repertoire of miRNA binding sites: prediction and functional implications

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4315299

27 October 2018

Identifiers

DOI

10.1101/GR.178194.114

1 reference

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release_7rnnrpd72rgynch3fnfya5pqwu

22 February 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7rnnrpd72rgynch3fnfya5pqwu

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

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22 February 2020

PubMed publication ID

25378249

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25378249%20AND%20SRC:MED&resulttype=core&format=json