Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP (Q24630900)

15 November 2016

title

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP (English)

1 reference

15 November 2016

0 references

1 reference

1 reference

15

Thomas Tuschl

Thomas

Tuschl

1 reference

18 September 2024

5

Jean Hausser

Jean

Hausser

1 reference

18 September 2024

2

Markus Landthaler

Markus

Landthaler

1 reference

18 September 2024

1

Markus Hafner

Markus

Hafner

1 reference

18 September 2024

14

Mihaela Zavolan

Mihaela

Zavolan

1 reference

18 September 2024

Mathias Munschauer

10

Mathias

Munschauer

1 reference

18 September 2024

8

Manuel Ascano

Manuel Jr

Ascano

1 reference

18 September 2024

Lukas Burger

3

Lukas

Burger

1 reference

18 September 2024

Mohsen Khorshid

4

Mohsen

Khorshid

1 reference

18 September 2024

Philipp Berninger

6

Philipp

Berninger

1 reference

18 September 2024

Andrea Rothballer

7

Andrea

Rothballer

1 reference

18 September 2024

Anna-Carina Jungkamp

9

Anna-Carina

Jungkamp

1 reference

18 September 2024

Alexander Ulrich

11

Alexander

Ulrich

1 reference

18 September 2024

Greg S Wardle

12

Greg S

Wardle

1 reference

18 September 2024

Scott Dewell

13

Scott

Dewell

1 reference

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

18 September 2024

language of work or name

English

0 references

publication date

2 April 2010

0 references

published in

Cell

0 references

volume

141

0 references

issue

1

0 references

page(s)

129-41

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

MicroRNAs: target recognition and regulatory functions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Most mammalian mRNAs are conserved targets of microRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

The impact of microRNAs on protein output

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

A mammalian microRNA expression atlas based on small RNA library sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Modular recognition of RNA by a human pumilio-homology domain

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Widespread changes in protein synthesis induced by microRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Regulation of translation initiation in eukaryotes: mechanisms and biological targets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Identification of let-7-regulated oncofetal genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

RNA-binding proteins: modular design for efficient function

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

VICKZ proteins: a multi-talented family of regulatory RNA-binding proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

CLIP identifies Nova-regulated RNA networks in the brain

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Characterization of Heterogeneous Nuclear RNA-Protein Complexes In Vivo with Monoclonal Antibodies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Pre-mRNA processing reaches back to transcription and ahead to translation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

RNA regulons: coordination of post-transcriptional events

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTR

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

microRNA target predictions in animals

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

A PUF family portrait: 3'UTR regulation as a way of life

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

mRNA localization: gene expression in the spatial dimension

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

New implications for the QUAKING RNA binding protein in human disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Inference of miRNA targets using evolutionary conservation and pathway analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Target RNA motif and target mRNAs of the Quaking STAR protein

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Identification of a target RNA motif for RNA-binding protein HuR.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Structure of nuclear ribonucleoprotein: identification of proteins in contact with poly(A)+ heterogeneous nuclear RNA in living HeLa cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Ultraviolet light-induced crosslinking of mRNA to proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Photocross-linking of nucleic acids to associated proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Isolation of microRNA targets by miRNP immunopurification

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

4-Thiouridine photosensitized RNA-protein crosslinking in mammalian cells

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Site-specific crosslinking of human microRNPs to RNA targets

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861495

Cross-linking of mRNA to proteins by irradiation of intact cells with ultraviolet light

28 November 2018

1 reference

12 December 2020

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

1 reference

12 December 2020

Expression of oncofetal RNA-binding protein CRD-BP/IMP1 predicts clinical outcome in colon cancer

1 reference

12 December 2020

The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a

1 reference

12 December 2020

Base composition analysis of nucleosides using HPLC.

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

Computational analysis of small RNA cloning data

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

An RNA map predicting Nova-dependent splicing regulation

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

A gene atlas of the mouse and human protein-encoding transcriptomes

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

Vienna RNA secondary structure server

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

Structure and function of KH domains

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

Finding regulatory elements and regulatory motifs: a general probabilistic framework

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

Bioconductor: open software development for computational biology and bioinformatics

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

A Model-Based Background Adjustment for Oligonucleotide Expression Arrays

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2010.03.009

7 January 2021

10.1016/J.CELL.2010.03.009

Identifiers

DOI

1 reference

1 reference

1 reference

1 reference