Replication through an abasic DNA lesion: structural basis for adenine selectivity (Q27660600)

1

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Kay Diederichs

5

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author name string

Nina Blatter

2

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Ramon Kranaster

3

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Andreas Schnur

4

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Andreas Marx

DNA Polymerase Substrate Specificity: SIDE CHAIN MODULATION OF THE"A-RULE"

7

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language of work or name

English

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publication date

19 May 2010

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published in

The EMBO Journal

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volume

29

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issue

10

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page(s)

1738-47

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cites work

1 reference

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DNA Synthesis across an Abasic Lesion by Human DNA Polymerase ι

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DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics

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Caught bending the A-rule: crystal structures of translesion DNA synthesis with a non-natural nucleotide

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Stepwise translocation of Dpo4 polymerase during error-free bypass of an oxoG lesion

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High-efficiency bypass of DNA damage by human DNA polymerase Q

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Lesion (in)tolerance reveals insights into DNA replication fidelity

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Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability

20 March 2017

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20 March 2017

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Genome maintenance mechanisms for preventing cancer

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Rev1 employs a novel mechanism of DNA synthesis using a protein template

20 March 2017

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Crystal structures of a ddATP-, ddTTP-, ddCTP, and ddGTP- trapped ternary complex of Klentaq1: insights into nucleotide incorporation and selectivity

20 March 2017

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20 March 2017

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Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

20 March 2017

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Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity

22 April 2017

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The Y-family of DNA polymerases

7 April 2017

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

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7 April 2017

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Identifying the features of purine dNTPs that allow accurate and efficient DNA replication by herpes simplex virus I DNA polymerase.

29 September 2017

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Mutational specificity and genetic control of replicative bypass of an abasic site in yeast

29 September 2017

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What a difference a decade makes: insights into translesion DNA synthesis

29 September 2017

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Highly tolerated amino acid substitutions increase the fidelity of Escherichia coli DNA polymerase I.

29 September 2017

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Human DNA polymerase alpha uses a combination of positive and negative selectivity to polymerize purine dNTPs with high fidelity

29 September 2017

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Mechanism of template-independent nucleotide incorporation catalyzed by a template-dependent DNA polymerase

29 September 2017

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Evidence for a Watson-Crick hydrogen bonding requirement in DNA synthesis by human DNA polymerase kappa

29 September 2017

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Fidelity of mispair formation and mispair extension is dependent on the interaction between the minor groove of the primer terminus and Arg668 of DNA polymerase I of Escherichia coli

29 September 2017

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Role of base stacking and sequence context in the inhibition of yeast DNA polymerase eta by pyrene nucleotide.

29 September 2017

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Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase

29 September 2017

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Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

29 September 2017

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Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template

29 September 2017

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Escherichia coli DNA polymerase I (Klenow fragment) uses a hydrogen-bonding fork from Arg668 to the primer terminus and incoming deoxynucleotide triphosphate to catalyze DNA replication.

29 September 2017

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Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site

29 September 2017

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Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase

29 September 2017

1 reference

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Yeast DNA polymerase η makes functional contacts with the DNA minor groove only at the incoming nucleoside triphosphate

29 September 2017

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The "A" rule revisited: polymerases as determinants of mutational specificity

29 September 2017

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New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions

29 September 2017

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Active site tightness and substrate fit in DNA replication

29 September 2017

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Error-prone repair DNA polymerases in prokaryotes and eukaryotes

29 September 2017

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Quantitative measurement of translesion replication in human cells: evidence for bypass of abasic sites by a replicative DNA polymerase

29 September 2017

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Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection

29 September 2017

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Hydrogen bonding revisited: Geometric selection as a principal determinant of DNA replication fidelity

29 September 2017

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Random mutagenesis of Thermus aquaticus DNA polymerase I: concordance of immutable sites in vivo with the crystal structure

29 September 2017

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Compilation, alignment, and phylogenetic relationships of DNA polymerases

29 September 2017

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Nucleotide insertion and primer extension at abasic template sites in different sequence contexts.

29 September 2017

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Infidelity of DNA synthesis associated with bypass of apurinic sites

29 September 2017

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Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases

29 September 2017

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An attempt to unify the structure of polymerases

29 September 2017

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Mutation frequency and spectrum resulting from a single abasic site in a single-stranded vector

29 September 2017

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Compilation and alignment of DNA polymerase sequences

29 September 2017

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Nucleic acid polymerases use a general acid for nucleotidyl transfer

29 September 2017

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Translesional synthesis on DNA templates containing a single abasic site. A mechanistic study of the "A rule".

2 June 2018

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2 June 2018

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2 June 2018

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Opposed steric constraints in human DNA polymerase beta and E. coli DNA polymerase I.

21 January 2018

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Abasic translesion synthesis by DNA polymerase beta violates the "A-rule". Novel types of nucleotide incorporation by human DNA polymerase beta at an abasic lesion in different sequence contexts

21 January 2018

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Mechanism of abasic lesion bypass catalyzed by a Y-family DNA polymerase.

21 January 2018

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Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts

21 January 2018

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Human DNA primase uses Watson-Crick hydrogen bonds to distinguish between correct and incorrect nucleoside triphosphates

21 January 2018

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Hoogsteen base pair formation promotes synthesis opposite the 1,N6-ethenodeoxyadenosine lesion by human DNA polymerase iota

21 January 2018

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Evaluating the contribution of base stacking during translesion DNA replication

21 January 2018

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Motions of the fingers subdomain of klentaq1 are fast and not rate limiting: implications for the molecular basis of fidelity in DNA polymerases

21 January 2018

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Identification of hydrogen bonds between Escherichia coli DNA polymerase I (Klenow fragment) and the minor groove of DNA by amino acid substitution of the polymerase and atomic substitution of the DNA.

21 January 2018

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A specific partner for abasic damage in DNA

21 January 2018

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Side chains that influence fidelity at the polymerase active site of Escherichia coli DNA polymerase I (Klenow fragment)

21 January 2018

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12 December 2020

DNA polymerases eta and theta function in the same genetic pathway to generate mutations at A/T during somatic hypermutation of Ig genes

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12 December 2020

Insertion of nucleotides opposite apurinic/apyrimidinic sites in deoxyribonucleic acid during in vitro synthesis: uniqueness of adenine nucleotides

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12 December 2020

Mechanism of DNA Strand Transfer Reactions Catalyzed by HIV-1 Reverse Transcriptase

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12 December 2020

Base miscoding and strand misalignment errors by mutator Klenow polymerases with amino acid substitutions at tyrosine 766 in the O helix of the fingers subdomain

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12 December 2020

Mutability of DNA polymerase I: implications for the creation of mutant DNA polymerases

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Identifiers

DOI

10.1038/EMBOJ.2010.64

1 reference

release_ie4ofzj7hnahnpgevamc7amafu

Fatcat ID

0 references

1 reference

1 reference

PubMed publication ID

20400942

1 reference