DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics (Q27649103)

1

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François-Yves Dupradeau

2

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David A Case

3

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Christopher J Turner

4

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Joanne Stubbe

Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites

5

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language of work or name

English

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publication date

January 2008

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published in

Nucleic Acids Research

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volume

36

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issue

1

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page(s)

253-62

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cites work

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Synthesis, characterization and solution structure of tethered oligonucleotides containing an internal 3'-phosphoglycolate, 5'-phosphate gapped lesion

20 March 2017

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Solution structure of an oligonucleotide containing an abasic site: evidence for an unusual deoxyribose conformation

20 March 2017

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DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]

20 March 2017

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Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis

20 March 2017

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Structures of apurinic and apyrimidinic sites in duplex DNAs

20 March 2017

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Solution Structure of a Duplex DNA with an Abasic Site in a dA Tract

20 March 2017

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Instability and decay of the primary structure of DNA

20 March 2017

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3-methyladenine DNA glycosylases: structure, function, and biological importance

20 March 2017

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Mutagenesis by apurinic/apyrimidinic sites

20 March 2017

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Dynamics of the interaction of human apurinic endonuclease (Ape1) with its substrate and product

20 March 2017

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Incision Activity of Human Apurinic Endonuclease (Ape) at Abasic Site Analogs in DNA

20 March 2017

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Half-life and DNA strand scission products of 2-deoxyribonolactone oxidative DNA damage lesions

20 March 2017

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Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta

29 September 2017

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New insights into the structure of abasic DNA from molecular dynamics simulations

29 September 2017

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Role of electrophilic and general base catalysis in the mechanism of Escherichia coli uracil DNA glycosylase.

29 September 2017

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Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

29 September 2017

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Refined solution structure of a DNA heteroduplex containing an aldehydic abasic site

29 September 2017

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Determination of DNA and protein structures in solution via complete relaxation matrix analysis of 2D NOE spectra

29 September 2017

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The mutational specificity of the Dbh lesion bypass polymerase and its implications

29 September 2017

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Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

2 June 2018

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Nucleotide insertion kinetics opposite abasic lesions in DNA.

2 June 2018

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Two-dimensional nuclear Overhauser effect: complete relaxation matrix analysis.

2 June 2018

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Possible roles of beta-elimination and delta-elimination reactions in the repair of DNA containing AP (apurinic/apyrimidinic) sites in mammalian cells

2 June 2018

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Differential solvation and tautomer stability of a model base pair within the minor and major grooves of DNA.

2 June 2018

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Synthesis and characterization of oligonucleotides containing a 4'-keto abasic site

27 November 2018

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Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts

27 November 2018

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The efficiency and specificity of apurinic/apyrimidinic site bypass by human DNA polymerase eta and Sulfolobus solfataricus Dpo4.

27 November 2018

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Low fidelity DNA synthesis by a y family DNA polymerase due to misalignment in the active site.

27 November 2018

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Excision of products of oxidative DNA base damage by human NTH1 protein.

27 November 2018

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Uracil-DNA glycosylase from Escherichia coli

27 November 2018

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12 December 2020

Coding properties of poly(deoxycytidylic acid) templates containing uracil or apyrimidinic sites: in vitro modulation of mutagenesis by deoxyribonucleic acid repair enzymes

1 reference

12 December 2020

Insertion of nucleotides opposite apurinic/apyrimidinic sites in deoxyribonucleic acid during in vitro synthesis: uniqueness of adenine nucleotides

1 reference

12 December 2020

Excision of C-4'-oxidized deoxyribose lesions from double-stranded DNA by human apurinic/apyrimidinic endonuclease (Ape1 protein) and DNA polymerase beta

1 reference

12 December 2020