Agilent Katalog 2009 en

Maintaining your Agilent
GC and GC/MS Systems
Our measure is your success.
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Table of Contents
Gas Management........................................................................................1
Gas Types ....................................................................................................................................................................................2
Gas Purification Systems.............................................................................................................................................................4
Gas Traps.....................................................................................................................................................................................6
Renewable Gas Purification System .........................................................................................................................................12
Universal/External Split Vent Trap.............................................................................................................................................13
Regulators .................................................................................................................................................................................14
Tubing........................................................................................................................................................................................15
Flowmeters ...............................................................................................................................................................................16
Gas Leak Detector.....................................................................................................................................................................18
Sample Introduction ..................................................................................19

Vials...........................................................................................................................................................................................20
Electronic Crimpers and Decappers..........................................................................................................................................25
Gold Standard Autosampler Syringes .......................................................................................................................................26
Headspace Sampler..................................................................................................................................................................34
CTC Autosampler Supplies........................................................................................................................................................37
Purge and Trap Supplies ...........................................................................................................................................................41
Markes Thermal Desorption .....................................................................................................................................................43
Inlets ..........................................................................................................45
Premium Non-Stick Septa.........................................................................................................................................................46
Ferrules .....................................................................................................................................................................................50
Capillary Flow Technology Supplies..........................................................................................................................................54
Split/Splitless Liners ..................................................................................................................................................................55
Direct Connect Liners................................................................................................................................................................59
Helix Liners................................................................................................................................................................................59
Split/Splitless Inlets...................................................................................................................................................................60
Cool On-Column Inlets ..............................................................................................................................................................69
Purged Packed Inlets ................................................................................................................................................................75
Programmed Temperature Vaporizer (PTV) Inlets .....................................................................................................................78
Detectors ...................................................................................................83
Flame Ionization Detector (FID)................................................................................................................................................84
Electron Capture Detector (ECD)..............................................................................................................................................91
Thermal Conductivity Detector (TCD) .......................................................................................................................................94
Flame Photometric Detector (FPD)...........................................................................................................................................99
Nitrogen Phosphorus Detector (NPD) ....................................................................................................................................106
Nitrogen and Sulfur Chemiluminescence Detectors...............................................................................................................113
GC/MS Systems ......................................................................................115

Maintaining Mass Selective Detectors (MSD).......................................................................................................................116
MSD Contamination ...............................................................................................................................................................118
Cleaning and Maintenance Supplies......................................................................................................................................126
Ion Source...............................................................................................................................................................................128
Installing a Capillary Column in the GC/MSD Interface.........................................................................................................134
QuickSwap MS Interface Restrictors......................................................................................................................................135
MSD Filaments ......................................................................................................................................................................136
Vacuum Systems and Pumps .................................................................................................................................................138
MSD Electron Multipliers and Replacement Horn ................................................................................................................142
MS Test and Performance Samples........................................................................................................................................143

Gas Management
Avoid column damage, improve detector life,
and achieve reliable, consistent results.
Gas management means more than just selecting the appropriate carrier gas for
your needs. It also means taking steps to prevent contaminants like oxygen, moisture,
and hydrocarbons from damaging your GC column.
As you read through the following pages, you will find…
• Practical advice about carrier gas types, impurities, leak detection, and flow rates.
• Valuable techniques that can minimize the likelihood of GC system contamination.
• Tips and tools that will help your lab implement gas management protocols.
• The latest details about Agilent-engineered gas purifiers, tubing, regulators,
leak detectors, and flowmeters.
Order online at www.agilent.com/chem/store 1

Gas Types
Carrier Gases
The most frequently used carrier gases are helium and hydrogen, although nitrogen
and argon can be used. Purity is essential for these gases since they sweep the sample
through the column where it is separated into its component parts and then through
the detector for component quantification. Carrier gas purity is also critical to prevent
degradation of chromatographic columns and hardware.
The following tables list minimum and maximum pressures in psi for inlets and detectors
measured at the bulkhead fitting at the back of the gas chromatograph.
Inlet Pressure Settings (psi)

Split/Splitless Split/Splitless Cool On-Column Packed PTV
(0-150 psi) (0-100 psi)
Carrier max 170 120 120 120 120

(psi)
Carrier min Must supply 20 psi greater than pressure used in method
(psi)
Detector Pressure Settings (psi)

FID NPD TCD ECD FPD
Hydrogen 35-100 35-100 45-100

Air 55-100 55-100 100-120
Make up 55-100 55-100 55-100 55-100 55-100
Reference 55-100
Conversions: 1 psi = 6.8947, kPa = 0.068947, Bar = 0.068 ATM
2 Order online at www.agilent.com/chem/store

Gas Management
Gas Purity and Selection

Agilent recommends that carrier
and detector gases be 99.9995% pure.
Air needs to be zero grade or better.
Agilent also recommends using traps to
remove hydrocarbons, water and oxygen.
When used with capillary columns, GC
detectors require a separate makeup gas
for optimum sensitivity. For each detector
and carrier gas, there is a preferred choice
for makeup gas. This table lists gas Detector Carrier Gas Make up Make up Purge or
recommendations for capillary columns. 1st choice 2nd choice Reference
Electron capture Hydrogen Argon/methane Nitrogen Anode purge must

be same as
Helium Argon/methane Nitrogen
makeup
Nitrogen Nitrogen Argon/methane
Argon/methane Argon/methane Nitrogen
Flame ionization Hydrogen Nitrogen Helium Hydrogen and air
for detector
Helium Nitrogen Helium
Nitrogen Nitrogen Helium
Flame Hydrogen Nitrogen None Hydrogen and air
photometric for detector
Helium Nitrogen
Nitrogen Nitrogen
Argon Nitrogen
Mass selective Hydrogen None None
Helium None None
Nitrogen Helium Nitrogen Helium Hydrogen and air
phosphorous for detector
Nitrogen Nitrogen Helium
Thermal Hydrogen Must be same as Must be same as Reference must
conductivity carrier and carrier and be same as carrier
Helium
reference reference and makeup
Nitrogen

Contaminants & Purities
Contaminants in gases are major contributors to capillary column degradation
and detector noise, and can interfere with chromatographic results. Concentration
of these contaminants vary by the grade of gas.
Hydrocarbons and Halocarbons

• Decrease detector sensitivity by increasing detector background noise.
• Can also cause baseline drift or wander, contaminant peaks, and noisy
or high offsets of baselines.
Moisture
• Can be introduced by improper handling and/or installation of plumbing.
• A common cause of column stationary phase degradation.
• Can damage instrument.
Oxygen
• Most common contaminant.
• A common cause of column stationary phase and inlet liner degradation.
• Can cause decomposition of labile analytes.
• Opportunity for introduction at every fitting present in the gas line or during
use of gas permeable tubing.
Gas Purification Systems

Purifiers are available in a variety of sizes and configurations to remove common
Tips & Tools
contaminants like oxygen, moisture, and hydrocarbons. In-line gas purifiers, including
Gas purifiers should always be refillable, indicating, S-shaped, and metal body types, are made to remove specific
oriented vertically, not horizontally. contaminants. Agilent also offers gas purification systems with removable cartridges.
These systems provide the ability to design the right combination of filters needed
for your application to achieve the proper gas purity.

Gas Management
Carrier Gas Purification

The Carrier Gas Purification illustration In-Line Gas Purifiers
shows the most common gas purification
configurations used in gas chromatography.
Regardless of which purification
system is employed, proper installation
and maintenance is required to -OR-
achieve optimal performance from Gas supply Gas Purification System
the purification system(s). A purifier
that is not maintained will eventually
expire and become ineffective, or worse,
a source of contamination.
• Determine desired purity level.
• Keep number of fittings in gas line -OR-
to a minimum. Gas supply Combination Trap
• Install purifiers in a convenient location Vent
close to the GC.
• Purifier log books are useful for
determining maintenance schedule.
• Use indicating traps closest to the GC
so you can determine when to change
the traps that are upstream. Gas supply = cylinder, in-house line, or gas generator
Regulator = brass dual stage regulator
Detector Gas Purification Key
1 = Moisture Trap
FID make-up, air, and H2
2 = Hydrocarbon Trap
ECD make-up 3 = Oxygen Trap
4 = Indicating Oxygen Trap

ELCD reaction gas
5 = Gas Purification System
MS carrier gas 6 = Combination Trap for

moisture, oxygen, and
hydrocarbon removal

Gas Traps
The purpose of gas traps is to remove detrimental impurities from the carrier and detector
gases. Combination traps are available which remove moisture, oxygen and/or organics
with a single trap. The effectiveness of the traps depends on the initial quality of the gas.
Constant exposure of capillary columns to oxygen and moisture, especially at high
temperatures, results in rapid and severe column damage. The use of oxygen and
moisture traps for the carrier gas may extend column life and protect the instrument.
Any moisture or oxygen introduced into the gas stream due to a leak will be removed
by the trap until it expires.

Gas Management
Moisture (Water) Traps

Indicating moisture traps are available in
plastic and glass bodies. Glass body traps
are used when potential contaminants
from plastic trap bodies are a concern.
Glass traps are normally encased in a Moisture trap
protective, plastic shrink wrap or a high
impact plastic shield (outer trap body).
Glass and plastic bodied traps are usually Moisture Traps
pressure tested at 150 psi, thus they are
safe for use at the typical pressures Description Size Removal Max. 1/8 in. 1/4 in.
required by the GC. (cc) Capacity (g) Effluent H2O Part No. Part No.
Concentration
(ppb)
Molecular Sieve 13X and Indicating 4A (MT Series)

Refillable 120 21.6 20 MT120-2 MT120-4
Moisture Trap
Refillable 200 36.0 18 MT200-2 MT200-4
Moisture Trap
Refillable 400 72.0 14 MT400-2 MT400-4
Moisture Trap
Adsorbent refill (1 pint) for MT series MSR-1 MSR-1
Molecular Sieve 5A and Indicating Drierite (MT-D Series)

Refillable 120 21.6 22 MT120-2-D MT120-4-D
Moisture Trap
Moisture Trap
Moisture Trap
Tips & Tools Adsorbent Refill (1 pint) for MT-D Series MSR-2 MSR-2
Moisture traps are highly
recommended for carrier
and ECD gases.

Moisture Traps
Description Size Removal Max. 1/8 in. 1/4 in.
(cc) Capacity (g) Effluent H2O Part No. Part No.
Concentration
(ppb)
Silica Gel, Grade 40, and Indicating Silica Gel, Grade 48 (MT-S Series)
Refillable 120 31.5 40 MT120-2-S MT120-4-S
Moisture Trap
Moisture Trap
Moisture Trap
Refillable glass moisture trap
Adsorbent Refill (1 pint) for MT-S series SGR SGR
Glass Indicating Moisture Traps (GMT and LGMT Series)

Glass Indicating 70 11.4 7 GMT-2GC-HP GMT-4GC-HP
Moisture Trap
Glass Indicating 100 16.3 6 GMT-2-HP GMT-4-HP
Moisture Trap
Glass Indicating 250 40.09 6 LGMT-2-HP LGMT-4-HP
Moisture S-trap Moisture Trap
Molecular Sieve Refill for GMT and LGMT series GMSR GMSR
Moisture Removal S-Traps

Moisture S-trap, preconditioned* 5060-9084
Moisture S-trap, unconditioned 5060-9077
Big moisture trap
Big Moisture Traps (BMT Series)
Big Moisture 750 BMT-2 BMT-4
Trap
Refill for Big Moisture Trap (enough for 2 refills) BMSR-1 BMSR-1
*Traps can be reconditioned by heating at a minimum of 350°C, with flow for 6 hours

Gas Management
Hydrocarbon Traps
Hydrocarbon traps remove organics,
such as hydrocarbons and halocarbons,
from the gas stream. The adsorbent is
usually activated carbon or an impregnated
carbon filter media. Carbon removes
Hydrocarbon trap, HT200-2
organic solvents from the gas stream,
including the typical solvents used
in nearly every lab. Hydrocarbon-moisture
combination traps are also available which Hydrocarbon Traps
remove water in addition to organics.
Capillary grade hydrocarbon traps are Description Size 1/8 in. 1/4 in.
purged with ultra-high helium and packed (cc) Part No. Part No.
with a very efficient activated carbon
Hydrocarbon Traps (HT Series)
material. Metal trap bodies are used to
prevent any contaminants in plastic trap Hydrocarbon Trap 200 HT200-2 HT200-4
bodies from contaminating the carbon Adsorbent Refill (1 pint) ACR ACR
adsorbent. Most hydrocarbon traps
can be refilled by the end user. Big Hydrocarbon Traps (BHT Series)
Big Hydrocarbon Trap 750 BHT-2 BHT-4
Refill for Big Hydrocarbon Trap (enough for two refills) BACR BACR
Hydrocarbon Removal S-Traps

Hydrocarbon S-Trap, used for trapping organics from gases 5060-9096
Capillary Grade Hydrocarbon Traps (HT3 Series)

Capillary Grade Hydrocarbon Trap 100 HT3-2 HT3-4
Adsorbent Refill (1 pint) ACR ACR
Tips & Tools

Hydrocarbon traps should be used with carrier, FID and ELCD gases.

Oxygen Traps
Oxygen traps usually include a metal-containing inert support reagent. Most oxygen traps
reduce the oxygen concentration to below 15-20 ppb. The capacity of a standard oxygen
trap is approximately 30 mg of oxygen per 100 cc of trap volume. Oxygen traps can also
remove some small organic and sulfur compounds from gas streams, but this is not their
primary application.
Metal (usually aluminum) trap bodies are recommended for GC analyses. Some plastics
are permeable to air and contain contaminants that can degrade gas quality. In addition,
many of the metal bodied oxygen traps can withstand high pressures (up to 2000 psi).
Some oxygen traps also remove moisture from the gas stream without affecting the
oxygen removal capability.
Indicating oxygen traps change color when oxygen is present in the gas at harmful levels.
Indicating traps are not intended to be the primary oxygen removal trap, but should be
Indicating oxygen trap, IOT-2-HP used in conjunction with a high capacity non-indicating oxygen trap. They are installed
after the high capacity oxygen trap in the gas line to indicate when the high capacity trap
has expired and needs to be changed. Expired oxygen traps need to be immediately
changed since they can contaminate the gas, in addition to failing to remove oxygen.
Oxygen Traps
Description Size 1/8 in. 1/4 in.
(cc) Part No. Part No.
Indicating Oxygen Traps (IOT and LIOT Series)

Indicating Oxygen Trap 30 IOT-2-HP IOT-4-HP
Tips & Tools
Large Indicating Oxygen Trap 150 LIOT-2 LIOT-4
Oxygen traps are critical on carrier
gas supplies to prevent column Economy Non-Indicating Oxygen Traps (OT1 Series)
bleed. They are also recommended
with ECD. Oxygen Trap 70 OT1-2 OT1-4
Big Oxygen Traps (BOT Series)

Big Oxygen Trap 750 BOT-2 BOT-4

Gas Management
Combination Traps
Agilent carries several Combination Traps
that provide multiple contaminant removal
in a single trap. These traps offer:
• Optimized adsorbents for maximum
surface area and capacity.
Agilent OT3 trap
• Leak-free, one-piece design to eliminate
potential leaks from using multiple traps.
• Efficient design which prevents
Combination Traps
channeling and promotes
efficient scrubbing. Description Size 1/8 in. 1/4 in.
• The ultimate in purification with (cc) Part No. Part No.
the Big Universal Trap, which removes Oxygen/Moisture Traps (OT3 Series)
oxygen, moisture, hydrocarbons,
carbon monoxide, and carbon dioxide. OT3 Trap 100 OT3-2 OT3-4
Hydrocarbon/Moisture Traps (HMT Series)

Hydrocarbon/Moisture Trap 200 HMT200-2 HMT200-4
Adsorbant Refill (1 pint) HCRMS HCRMS
Combination Traps for Chemical Ionization MS

Chemical Ionization for MS* G1999-80410
Big Universal Traps (RMS Series)

Hydrogen RMSHY-2 RMSHY-4
Helium (Ar/Me) RMSH-2 RMSH-4
Nitrogen RMSN-2 RMSN-4
*Isobutane or methane applications only

NEW! Renewable Gas Purification System
The Renewable Gas Purification System from Agilent not only traps large quantities of
contaminants and lasts a long time, but it is also recyclable. With average use, you'll only
have to purchase a replacement cartridge once per year or after approximately 20
cylinders worth of purification. And when you need a replacement, you have the option to
purchase a new or recycled cartridge. Recycled cartridges are refilled and certified to the
full specification of the new cartridges.
• All cartridges are environmentally friendly and reduce waste.
• High capacity – 850cc or more Oxygen filtration, 12g H2O, and approximately 8g
hydrocarbon filtration per cartridge – in a compact footprint.
• Improves 99.995% gas purity to 99.9995% purity.
• Dual indicators make it easy to see the purification results.
• Labeling displays indicator color and shape for accurate reading.
• Simple twist on/off knob and guide rod make cartridge changes quick and easy.
• One Renewable Purifier system can support up to four GC systems.
• Designed with efficiency, safety, and environmental responsibility in mind.
Renewable Gas Purification System

Renewable gas purification system
Description Part No.
Renewable gas purifier system startup kit G3440-60004

Includes one G3440-80007 base, one G3440-60003 renewable gas purifier
cartridge, and wall or bench mount hardware.
Renewable gas purifier system, base only G3440-80007
Renewable gas purifier cartridge, new G3440-60003
Renewable gas purifier recycled cartridge G3440-69003

Gas Management
Universal/External Split Vent Trap

Split vent traps stop environmental pollution. The split vent trap was designed to protect
the lab environment from the contaminants released by split injection systems, which can
vent up to 500 times the amount of sample reaching the detector into the laboratory's air.
A replaceable, impregnated carbon filter media traps and eliminates a broad range of
contaminants. The traps are also easy to change and come with three packs of
replacement cartridges each. Replace approximately every six months.
Split vent trap and cartridges, RDT-1020

Universal/External Split Vent Trap
Universal/external split vent trap with 3 cartridges, 1/8 in. Swagelock fitting RDT-1020
Replacement cartridges, 3/pk RDT-1023
Split vent trap kit G1544-60610
Tips & Tools

Replace split vent traps every six months.

Regulators
Agilent recommends using our economical brass body, dual stainless steel diaphragm
regulators for most GC applications. These regulators, combined with the proper
gas purification system, provide proper gas pressure control and purity for
gas chromatography.
Brass Body, Dual Stainless Steel Diaphragms, 1/8 in., U.S. Only*
CGA 346, 125 psig max (8.6 bar), Air 5183-4641

CGA 350, 125 psig max (8.6 bar), H2, Ar/Me 5183-4642
CGA 540, 125 psig max (8.6 bar), O2 5183-4643
CGA 580, 125 psig max (8.6 bar), He, Ar, N2 5183-4644
CGA 590, 125 psig max (8.6 bar), Air 5183-4645

Brass body regulator
*For 1/4 in. tubing, purchase a 1/4 in. adapter, U.S. only
Connectors (Swagelok to Female NPT)

Description Unit Part No.
1/8 in. (A) x 1/4 in. (B) connector, brass (included with brass regulators) 1/ea 0100-0118
1/4 in. (A) x 1/4 in. (B) connector, brass* 1/ea 0100-0119
Tips & Tools *Required for plumbing 1/4 in. tubing to regulators
When ordering a regulator, be sure
to specify the proper connections.
In the US, most gas manufacturers
follow CGA connection guidelines.
In Europe, there are a number of
organizations designating cylinder
connections that are specific to
individual countries. It is best
to contact your local supplier for
the proper connection designation.

Gas Management
Tubing
Cleaning Tubing Agilent recommends using copper tubing for most applications, since it is easy to bend
and plumb and is less expensive than stainless steel. Use stainless steel tubing only for
Before any tubing is placed into service,
crucial applications that require very high purity, or where building codes mandate its use.
or if it becomes contaminated with use,
it is essential that it be properly cleaned.
Unclean or improperly cleaned tubing can Determining Tubing Length
lead to contamination of the system with
disastrous results. Never use chlorinated Parameters: 2000 sccm (4.2 scfh); Temperature: 70°F; Pressure 30 psig
solvents to clean tubing or fittings.
Tubing Type Diameter Recommended Pressure Drop
Agilent provides clean, high quality (inches) Max. Length (feet) (psig)
GC grade tubing for large systems as
an economical alternative. Copper 1/8 50 2
Copper 1/4* 300 0.5
*Recommended when multiple instruments are connected to the same source
Tubing - Precleaned
Copper tubing, 1/8 in., 50 ft 5180-4196

Copper tubing, 1/8 in., 12 ft 5021-7107
Fittings
Fittings Kit 5180-4161

Includes brass nuts, ferrules, caps, plugs, unions and reducers
1/8 in. brass nut and ferrule set 5080-8750
Cylinder wall bracket

Cylinder wall bracket with strap & chain 5183-1941

(cylinder size up to 14 in., 35 cm)
Cylinder wall bracket, 5183-1941

Flowmeters
Setting and maintaining GC flow rates greatly affects the instrument accuracy
and sensitivity. During maintenance, verify carrier and support gas flows with
the proper flowmeter.
NEW! Precision Gas Flow Meter

Agilent's Precision Gas Flow Meter is the ultimate gas flowmeter for chromatography
applications. This hand-held flowmeter incorporates industry leading performance and
features in a highly accurate and reliable package. The inherent stability of the rugged,
solid state components allows us to provide the longest calibration interval on the market,
all traceable to NIST standards.
• Highly accurate and reliable measurement of common carrier and fuel gases used
in GC, including nitrogen, air, carbon dioxide, hydrogen, helium, and argon/methane.
Precision gas flow meter, 5067-0223 • Two year guaranteed calibration period traceable to NIST standards.
• Measures flow (0-500 mL/min.) based on gas viscosity properties with an accuracy
of ± 0.8% of reading + 0.2% of full scale.
• Flow rate range from 0-500 mL/min (no conversion necessary from SCCM) eliminates
the need for two separate meters to measure capillary and standard flows.
• Displays mass flow, volumetric flow, temperature, and pressure
readings simultaneously.
• Can be plumbed inline.
Precision Gas Flow Meter

Precision gas flow meter 5067-0223

Gas Management
ADM 1000
• Accuracy ± 3%.
• Operating temperature range – 0 to 45ºC for the instrument, -70 to 135ºC
for the tubing.
• Calibration – traceable to NIST primary standards.
• Real time, split ratio measurement.
• CE mark certified.
• Measures flow rates from 0.5 to 1000 mL/min.
• Split ratios – compare the ratio from one gas measurement to another
(i.e., injection port split ratios).
ADM flowmeters
ADM 2000
In addition to the features of the ADM 1000, the ADM 2000 includes:
• Mass flow measurements – measure flow rate, independent of atmospheric pressure
and temperature (calculated).
• Data output through RS-232 port.
• 9V battery and AC power adapter (120 or 220 VAC).
ADM Flowmeters
Description Flow Rate Gases Accuracy (%) Power RS-232 Part No.
(mL/min) Measured* Supply Data Output
Low High
ADM 1000** 0.5 1000 All ±3 9V Battery None 220-1170

ADM 2000** 0.5 1000 All ±3 Battery or 120V AC Yes 220-1171-U
ADM 2000E** 0.5 1000 All ±3 AC Adapter, 220V Yes 220-1171-E
Carrying Case for ADM 907-0056
*± 3% or ± 0.2 mL/min, whichever is greater with a flow rate of 0.5 - 1,000 mL/min
**Non-corrosive gases only

NEW! Gas Leak Detector
Gas leaks can cause detector noise and baseline instability, shorten column life and waste
expensive carrier gas. Liquid leak detectors, although inexpensive, can contaminate your
system. Agilent's G3388A electronic leak detector is an easy way to quickly identify leaks
in your system.
Gas Leak Detector

Handheld electronic gas leak detector G3388A

Includes probe, unit, AC power adapter/battery charger, battery, and user manual.
Check valves, fittings, and traps for leaks after every maintenance and thermal
cycling, as these can loosen some types of fittings.
Check for leaks at these connections:
Gas leak detector

• Gas supply bulkhead fittings • Traps
• Gas cylinder fitting • Shut-off valves
• Regulator fittings • T-fittings

Sample Introduction
Ensure optimal peak shape and reproducibility
through accurate sample delivery.
They may be small, but sample introduction supplies can have a profound impact on
your results. That is why Agilent vials, septa, and syringes are meticulously engineered
to work seamlessly with your GC and GC/MS instruments. They can help you achieve
reliable, repeatable results even for your most complex runs.
This section guides you through…
• The selection, use, and maintenance of your essential sample introduction supplies.
• Troubleshooting common and unusual syringe problems.
• Essential procedures, such as vial filling, syringe cleaning, and choosing the right
septa material for your application.

Vials
Agilent's wide opening vials are designed specifically for analyzing samples with your GC.
They have specially designed vial neck angles, bottom design, and height to ensure
compatibility with Agilent autosamplers with rotating or robotic arm trays. Agilent offers
a large variety of autosampler vials in different closures, cap colors, septa choices,
and package options. Agilent also offers convenience packs with 500 vials and caps
in a reusable blue storage box.
For small samples sizes, Agilent offers a variety of options. You can use microvolume
inserts with the wide opening vials or, for added convenience, use vials with small
volume capacity.
Vial Options
Glass - for general purpose Silanized - for use with

Agilent Certified Vials use and for use with acids samples that bind to glass,
and for trace analysis
Agilent certified vials undergo
stringent testing of critical
dimensions to ensure that each
vial works flawlessly with your GC
and GC/MS systems. Additionally,
each certified vial is made from
first hydrolytical class, borosilicate Polypropylene - for use with High Recovery Vials -
glass type 1 then packed in a alcohols and aqueous solvents for use with limited sample vials
clean, sealed environment to
prevent contamination.
Amber Vials - for use with Microvolume Inserts -

light-sensitive samples for use with very small
sample volumes

Sample Introduction
Vial Filling
When filling sample vials, keep in mind:
• If you need to test a large amount of sample over repeated injections, divide the sample
among several vials to obtain reliable results.
• When sample volume in the vial is low, contaminants from the previous sample
injection or solvent washes may have a greater impact on the sample.
The airspace in the vial is necessary to avoid forming a vacuum when sample
is withdrawn. This could affect reproducibility.
Preparing Sample Vials

The Agilent 7683 Automatic Liquid Sampler Injector and the tray use clear or amber
glass sample vials with crimp, snap, or screw top vials. The following diagram shows
the critical dimensions for sample vials and microvial inserts to be used with the 7683
Automatic Liquid Sampler. These dimensions do not make up a complete set of
specifications. Incompatible sample vials cause tray and turret errors.
5 minimum 6.25
3.7
8.2
34.5 maximum
32
11.7
Microvial insert Crimp cap sample vial Maximum height of a capped vial
All dimensions in millimeters

Selecting Vial Septa Materials
Vial cap septa are critically important to optimal analysis. Each septum complements
the overall system and enhances chemical performance. Agilent's vial cap septa are
specifically formulated and constructed for optimum system performance, with minimal
coring and superior chemical inertness.
Type Uses
Red Rubber/PTFE • Routine analysis

• Moderate resealing
• Excellent chemical inertness
• Not recommended for multiple injections or storage of samples
• Least expensive
Silicone/PTFE • Excellent resealing
• Resists coring
• Good for multiple injections
PTFE/Silicone/PTFE • Used in trace analysis applications
• Above average resealing
• Most resistant to coring
• Least evaporation
• Use with large diameter, blunt tip syringe needles
PTFE Disc • Good for MS and ECD analysis
• Good for large-volume injections
• Chemically inert
• No resealing
• Single injection
• No long-term sampling storage
Tips & Tools Viton • Chlorinated solvents
• Organic acids
To determine potential septa • Limited resealing
quantities, consider: • Not suitable for 32 guage syringe
• The number of samples
run during a day/week.
• If samples are run in small
or large batches.
• If samples are run manually
or with an autosampler.
• If samples are run overnight,
unattended.

Sample Introduction
Convenience Vial and Cap Packs

Vials Caps Unit Part No.
Certified Screw Top Vial Convenience Packs

Clear Blue screw caps, PTFE/red 500/pk 5182-0732
rubber septa
Convenience vial and cap pack Clear with write-on spot Blue screw caps, PTFE/red 500/pk 5182-0867
rubber septa
Amber with write-on spot Green screw caps, PTFE/red 500/pk 5182-0733
rubber septa
Clear Blue screw caps, 500/pk 5182-0736
PTFE/silicone/PTFE septa
Clear with write-on spot Blue screw caps, 500/pk 5182-0869
Amber with write-on spot Green screw caps, 500/pk 5182-0737
Clear Blue screw caps, PTFE/silicone 500/pk 5182-0734
septa
Clear with write-on spot Blue screw caps, PTFE/silicone 500/pk 5182-0868
septa
Amber with write-on spot Green screw caps, PTFE/silicone 500/pk 5182-0735
septa
Clear Blue screw caps, pre-slit 500/pk 5183-2079
PTFE/silicone septa
Clear with write-on spot Blue screw caps, pre-slit 500/pk 5183-2080
PTFE/silicone septa
Amber with write-on spot Green screw caps, pre-slit 500/pk 5183-2081
PTFE/silicone septa
Clear Blue screw caps, pre-slit 500/pk 5067-0205
PTFE/silicone septa

Convenience Vial and Cap Packs
Certified Crimp Top Vial Convenience Packs
Clear Silver aluminum crimp caps, 500/pk 5181-3400
PTFE/red rubber septa
Amber with write-on spot Silver aluminum crimp caps, 500/pk 5181-8801
Snap Top Vial Convenience Packs

Clear Clear polypropylene snap caps, 500/pk 5182-0547
Amber, with write-on spot Clear polypropylene snap caps, 500/pk 5182-0548
Certified crimp top vial convenience pack

Sample Introduction
Electronic Crimpers and Decappers

Whenever large amounts of crimp vials need to be crimped or decapped,
the electronic crimper or decapper is the right tool. It reduces stress and repetitive
motion injury associated with manual plier-style crimpers and decappers. Agilent's
newly-designed crimper offers easy, hand-held pushbutton operation and provides the
following advantages:
• Stronger and sturdier crimping and decapping.
• Consistent seals.
• Shorter recharging time and a larger number of battery charges.
• Better clearance and more flexibility thanks to improved crimp jaws.
• Individual test certificates.
Electronic crimper, 5062-0207
Electronic Crimpers and Decappers

11 mm Electronic Crimper with 4.8v rechargeable battery pack and charger 5062-0207
20 mm Electronic Crimper with 4.8v rechargeable battery pack and charger 5062-0208
11 mm Electronic Decapper with 4.8v rechargeable battery pack and charger 5062-0209
20 mm Electronic Decapper with 4.8v rechargeable battery pack and charger 5062-0210
4.8v nickel metal hydride replacement battery 5188-6565
Tips & Tools
For a consistent seal, make sure there are no folds or wrinkles

on the part of the cap that wraps under the neck of the vial.

Gold Standard Autosampler Syringes
With a broad selection of syringes for auto injection, Agilent has what you need for
accurate and effective sampling. Agilent delivers even more value in every autosampler
syringe with the introduction of many new features in our line of Gold Standard GC
Autosampler Syringes.
Agilent Gold Standard Autosampler syringes are designed:

• For reproducible sample volume delivery.
• Specifically for the Agilent inlet or autosampler.
• To maximize inlet septum lifetime.
Agilent Gold Standard Autosampler syringes feature:

• Lot numbers printed directly on the barrel with a corresponding Certificate of
Conformance ensuring certified performance to all specifications.
• Gold protective cap on the fused needle, preventing the glass syringe barrel from
chipping as it is pressed against the inlet.
Gold standard autosampler syringes
• Black ink and gold illuminating backing strip, for effortless viewing of the volume scale,
which is easily discernible from imitators.
• Environmentally friendly packaging, an improved design that reduces waste.
• Individually sealed packaging, for contaminant-free use right out of the box.
Tips & Tools

Use syringe needles with an Agilent dual-taper needle or a conical tip. Sharp-
tipped needles tend to tear the inlet septum and cause leaks. Also, a sharp-
tipped needle tends to leave residual amounts of sample on the septum as it
exits, resulting in a large solvent tail on the chromatogram.

Sample Introduction
Needle Gauge Selection

• Syringe needles compatible with Agilent Automatic Liquid Samplers are 42 mm long
and have an HP style or cone shaped tip.
• The Merlin Microseal requires 23 gauge needles.
• The smaller the gauge, the larger the needle diameter.
Needle Gauge Selection

Inlet Needle Gauge Column Type
Packed, split or splitless (including 23 gauge or 23/26 gauge tapered Any

PTV)
Cool on-column 23/26 gauge tapered or 26 gauge 530 µm
Cool on-column 26/32 gauge tapered 320 µm
Cool on-column 26/32 gauge tapered 250 µm
Needle Tip Needle Shape
Needle tips
Tips & Tools
For highest productivity and
to minimize coring, use Agilent
Premium Non-Stick Inlet Septa
with Center Point Guide.
See page 46.
Cone tip Tapered needle

Syringe Characteristics and Recommended Uses
Syringe Advantage Limitations Recommended Use
10 µL, PTFE-tipped • Less plunger binding than fitted • More expensive than fitted plunger • High sample throughput
plunger • PTFE-tipped syringes not available • Samples in polar solvents
• Replaceable plunger for reduced in 5 µL size • Dirty samples
repair cost • Gases and volatile samples
• Tight seal between plunger and barrel • Reactive samples
10 µL, fitted plunger • Most economical • Most accurate only for 1 µL and • General purpose syringe
• Most reliable fitted plunger syringe larger injections • Clean samples
• Less bending • Plunger not replaceable • Routine analysis
• Better for high viscosity samples
5 µL, fitted plunger • Most accurate for 1 µL injection • Thinnest plunger, can bend more • 1 µL injections
• No hardware modification needed for easily • Clean samples
0.5 µL • Not ideal for higher viscosity • Routine analysis
samples
• Plunger not replaceable

Sample Introduction
Syringe Troubleshooting Guide

Proper care, cleaning, and handling of each syringe will help ensure correct performance and long life. When cleaning your syringe,
it is best to use solvents that effectively dissolve the sample you are working with. Try to avoid cleaning agents that are alkaline, contain
phosphates, or are strongly acidic.
Problem Possible Cause(s) Suggested Action(s)
Bent plungers or stuck syringes • Particles such as dust, leftover samples, salts, • Try PTFE-tipped plunger syringe.
metal, or glass can fill the narrow gap between the • If the plunger's movement feels "gritty," remove the
plunger shaft and the inside wall of the barrel. plunger from the barrel, flush the shaft with
solvent, and wipe it dry with a lint-free cloth. Then,
carefully insert the plunger back into the barrel.
Finally, submerge the tip of the needle into a
container of solvent, and cycle the plunger to pull
the solvent into and out of the barrel.
• Never cycle the plunger in a dry syringe.
• Do not "mix & match" plungers and barrels.
• Always clean syringes after use immediately.
Bent needles • Improper needle alignment. • Use only Agilent autosamplers.
• Narrow-gauge needles (26 gauge) bend more They are precision-designed to ensure proper
easily than larger (23 gauge) needles. alignment with the Agilent inlet.
• Needles tend to bend when inserted into the • Use 23 to 26-gauge tapered needles to get the
sample vial - not the inlet port. This can be caused combined benefits of greater septa life and fewer
by septa that are too "tough." bent needles.
• If the needle has been slightly bent when mounted • Only use Agilent vials and septa.
in the autosampler - or when the syringe is
installed into the autosampler - then it is more likely
to bend further when it pushes through the septa
on the sample vial caps.

Problem Possible Cause(s) Suggested Action(s)
Blocked needles • Sample material or contaminants may be trapped Remove the plunger and use a second syringe to fill
inside the needle. the blocked syringe with solvent. Then, insert the
• The needle may not have been properly cleaned. plunger and gently push solvent through needle.
Important: Try to use a cleaning agent that is
appropriate for the contaminant. Common choices
are methanol, methylene chloride, acetontrile,
and acetone.
Rust • During normal use, the shaft rubs against the glass To slow this process, remove the water from the
Note: even minor rust can cause the walls of the barrel. This gradually wears away the syringe at the end of each day.
plunger to become stuck in the barrel. rust-resistant metal on the shaft's surface.
1. Rinse the syringe several times with a "dry"
• Rusting happens most rapidly when using water or
solvent, such as acetone.
solvents that may contain (or absorb) water.
2. Remove the syringe from the autosampler,
and wipe the plunger dry with a lint-free cloth.
3. Let syringe and plunger air dry.
"Ring around the neck" • Skin oils and other organic material. • Never touch the plunger shaft with your fingers.
(A dark ring between the top • Fine metal and glass particles from the syringe • If build-up appears when water is the solvent:
of the barrel and the end of plunger and barrel may be rubbing together. Once rinse syringe with acetone and wipe the plunger
the volume scale.) this happens, the plunger may bend if used further. clean at the end of each day.
Loose plungers • The syringe is nearing the end of its useful life. • Replace the syringe.
Accompanied by syringe leaks and • Note: Plungers normally feel "loose" when non-
area count reproducibility problems. polar solvents (like hexane and toluene) are used.

Sample Introduction
Cleaning Syringes During an Autosampler Sequence

To ensure the syringe is properly cleaned between injections, rinse and fill each solvent
bottle with 4 mL of fresh solvent. The liquid level will be near the shoulder of the bottle.
Good laboratory practice dictates using no more than 2 mL of the 4 mL solvent for syringe
4 mL fill volume
washes. The needle tip draws solvent 18.5 mm from the bottom of the vial.
2.0 mL usable
solvent volume
Minimum solvent level

Tapered Needle, 23-26s Gauge Autosampler Syringes
18.5 mm
2.0 mL solvent Volume Description Unit Needle Part No.
remains
(µL)
Needle tip position when withdrawing solvent 5 Tapered, fixed 23-26s/42/HP 5181-1273
Tapered, fixed 6/pk 23-26s/42/HP 5181-8810
Tapered, removable 23-26s/42/HP 5182-0835
Replacement needle for 5 µl syringe 3/pk 23-26s/42/HP 5182-0832
10 Tapered, fixed 23-26s/42/HP 5181-1267
Tapered, fixed 6/pk 23-26s/42/HP 5181-3360
Replacement needle for 10 µl syringe 3/pk 23-26s/42/HP 5181-3319
Tapered, fixed, PTFE-tipped plunger 23-26s/42/HP 5181-3354
Tapered, fixed, PTFE-tipped plunger 6/pk 23-26s/42/HP 5181-3361
Replacement plunger with PTFE tip 5181-3365
for fixed needle 10 µl syringe
for removable needle 10 µl syringe
50 Tapered, fixed, PTFE-tipped plunger 23-26s/42/HP 5183-0314
100 Tapered, fixed, PTFE-tipped plunger 23-26s/42/HP 5183-2042
Tips & Tools
When cleaning syringes between
injections, use Agilent wash vials
(p/n 9301-0723) and diffusion
caps (p/n 07673-40180).

Straight Needle, 23 and 26s Gauge Autosampler Syringes
Volume Description Unit Needle Part No.
(µL)
0.5 Cone-tipped, 23 gauge 23/42/HP 5188-5246

1 Cone-tipped, 23 gauge 23/42/HP 5188-5247
5 Straight, fixed, 26 gauge 26s/42/HP 9301-0891
Straight, fixed, 26 gauge 6/pk 26s/42/HP 5183-4728
Straight, fixed, 23 gauge 23/42/HP 9301-0892
Straight, fixed, 23 gauge 6/pk 23/42/HP 5182-0875
Straight, removable, 23 gauge 23/42/HP 5182-0834
Replacement needle for 5 µl syringe 3/pk 23/42/HP 5182-0830
10 Straight, fixed, 26 gauge 26s/42/HP 9301-0714
Straight, fixed, 26 gauge 6/pk 26s/42/HP 5183-4729
Straight, fixed, 23 gauge 23/42/HP 9301-0713
Straight, fixed, 23 gauge 6/pk 23/42/HP 9301-0725
Straight, fixed, PTFE-tipped plunger 23/42/HP 5181-8809
Straight, fixed, PTFE-tipped plunger 6/pk 23/42/HP 5183-4730
Replacement plunger for 10 µl fixed 5181-8808
needle syringe
Straight, removable, 23 gauge 23/42/HP 5181-8806
Straight, removable, PTFE-tipped plunger 23/42/HP 5181-8813
Replacement needle for 10 µl syringe 3/pk 23/42/HP 5181-8811
for removable needle 10 µl syringe
25 Straight, fixed, PTFE-tipped plunger 23/42/HP 5183-0316

Sample Introduction
GC Automatic Liquid Sampler Supplies

4 mL Clear screw top wash vials with screw caps (no septa) 144/pk 9301-0723
Septa for 4 mL vial 144/pk 9301-1031
Diffusion inserts for 4 mL vials 12/pk 07673-40180
4 mL wash vials with fill markings and caps 25/pk 5182-0551
Screw for mounting syringe 07673-20570
Quadrant tray (4 tray sections) 18596-40015
7673 Basic Supply Kit 07673-60840
Contains 10 µL syringes (6/ea), 23/26 gauge needles, 4 mL vials with
diffusion caps (144/pk), 2 mL automatic sampler vials with screw caps
(1,000/pk), GC septa (25/pk), vial racks (5/pk)

Headspace Sampler
The appropriate maintenance frequency for the Headspace Sampler varies significantly
depending on the sample matrix, solvents, temperatures, and sample throughput.
Recommended Maintenance Schedule

Maintenance Low Boiling Solvents High Boiling Solvents
Activity (water, food, flavor analyses) (OVI, blood alcohol analysis)
≤ 70 > 70 ≤ 70 > 70
samples/day samples/day samples/day samples/day
Replace sample 6 months 3 months 3 months Every month
probe
Steam clean 6 months 3 months 3 months Every month
Replace loop and With PM With PM With PM 6 months
deactivated tubing
Check tray tension 12 months 6 months 12 months 6 months
and alignment
G1888 Headspace sampler PM for headspace 36 months 12 months 12 months 6 months

and inlet
Extended PM 60 months 36 months 24 months 12 months
for headspace

Sample Introduction
Headspace Vials
Certified Flat Bottom Headspace Crimp Top Glass Vials

20 mL, clear, 23 x 75 mm 100/pk 5182-0837
10 mL, clear, 23 x 46 mm 100/pk 5182-0838
Certified Rounded Bottom Headspace Crimp Top Glass Vials

20 mL, clear, 23 x 75 mm 100/pk 5183-4474
10 mL, clear, 23 x 46 mm 100/pk 5183-4475
Certified headspace vials
Certified Headspace Vials for G1888A Autosampler
Headspace screw top vial, 20 mL, clear, 23 x 75 mm 100/pk 5188-2753
Headspace screw top vial, 10 mL, clear, 23 x 46 mm 100/pk 5188-5392
Headspace screw top vial, 20 mL, amber, 23 x 75 mm 100/pk 5188-6537
Headspace screw top vial, 10 mL, amber, 23 x 46 mm 100/pk 5188-6538
Certified UltraClean 18 mm screw caps with septa for headspace vials 100/pk 5188-2759
Headspace Vial Convenience Kits

Description Specifications Unit Part No.
20 mL Headspace crimp top, flat < 125°C 100/pk 5182-0839

bottom vials, silver aluminum one-
piece crimp caps with safety
feature, molded gray PTFE/black
butyl septa
20 mL Headspace crimp top, flat < 180°C 100/pk 5182-0840
bottom vials, silver aluminum one-
piece crimp caps with safety
feature, PTFE/white silicone septa

Headspace Supplies
Stainless Steel Sample Loops

Sample loop, 1 mL, deactivated 2321700003
Sample loop, 3 mL, deactivated 2321700004
Probes and Unions

Sample probe, deactivated 2322700011
M6 union, brass 2302533140
Union, zero dead volume, deactivated 2307230001
Union 2307232901
Transfer Line Needles and Unions
Headspace supplies Needle, headspace transfer line, deactivated 0.5 mm OD 2322590004

Needle, headspace transfer line, deactivated 0.7 mm OD 2322590005
Strain relief septum nut 6410090050
Tubing
Tubing, solenoids to 6-port, deactivated 0410105017
Tube, probe to 6-port valve, deactivated 1300502506
Standards
OQ/PV Headspace Sample 5182-9733
Contains 0.2-0.3% t-butyl disulfide, 1,2-dichlorobenzene, and nitrobenzene in
ethanol
PM Kits
G1888A PM kit with 1 mL loop G1888-60702
G1888A PM kit with 3 mL loop G1888-60703
G1888A enhanced PM kit G1888-60704

Sample Introduction
CTC Autosampler Supplies

Agilent now offers a portfolio of CTC-recommended supplies for your GC PAL and
CombiPAL autosamplers.
CombiPAL and GC PAL CombiPAL and GC PAL Liquid Injection Vials and Caps
Liquid Injection Description Unit Part No.
Vials and Caps 2 mL vials
These micro and 2 mL vials and caps Crimp top vial, wide opening, clear 100/pk 5181-3375
are designed to work seamlessly with
CombiPAL and GC PAL magnetic needle Crimp top vial, wide opening, amber, write-on spot 100/pk 5181-3376
guides and bar code readers. Crimp top vial, wide opening, clear, write-on spot 1000/cs 5183-4492
Crimp top vial, wide opening, amber, write-on spot 1000/cs 5183-4493
Screw top vial, wide opening, clear 100/pk 5182-0714
Crimp/snap top vial, wide opening 100/pk 5182-0544
2 mL caps
Crimp cap, 11 mm magnetic 100/pk 5188-5386
Screw cap, PTFE/white silicone septa 100/pk 5182-0720
Snap cap, blue polyethylene, PTFE/silicone septa 100/pk 5182-0541
Micro vials
Crimp top vial, 0.8 mL, amber glass, flat bottom 1000/pk 5183-4487
Crimp top vial, 0.1 mL, clear, tapered 500/pk 5180-0844
Crimp top vial, 0.3 mL, clear, round 500/pk 5180-0841
Crimp top vial, 0.7 mL, amber, round 500/pk 5180-0805
Crimp top vial, 0.5 mL, amber, conical 500/pk 5180-0806
Micro caps
Crimp caps with PTFE/silicone septa 500/pk 5180-0842
CombiPAL Autosampler

CombiPAL and GC PAL Liquid Injection Syringes
A key feature of CTC's GC PAL and CombiPAL systems is the ability to inject a wide range
of sample volumes – up to 500 µL for LVI applications. To help you take full advantage
of this flexibility, Agilent offers a wide range of C-type syringes – from 1.2 µL through
500 µL – to accommodate fast and large-volume injections. Each syringe is subjected
to stringent quality control procedures to make sure it meets the highest levels of
precision and accuracy.
CombiPAL and GC PAL Liquid Injection Syringes

Volume (µL) Description Unit Gauge Needle Part No.
1.2 Fixed needle 26 26/51/AS G6500-80113

5 Fixed needle 26 26/51/AS G6500-80114
10 Fixed needle 26 26/51/2 G6500-80115
26 26/51/AS G6500-80116
Replacement 10/pk G4200-80105
plunger
Fixed needle 23 23S/51/AS 5188-6596
25 Fixed needle 26 26/51/AS G6500-80117
plunger
100 Fixed needle 26 26/51/AS G6500-80118
250 Fixed needle 26 26/51/AS G6500-80119
plunger
500 Fixed needle 26 26/51/AS G6500-80120
Replacement G4200-80106
plunger

Sample Introduction
CombiPAL
Headspace Supplies
Our fixed-needle headspace syringes
CTC syringe, G6500-80109
feature a sideport needle for gas flushing,
in conformance with strict CTC standards.
Use with Agilent’s Merlin Microseal to
minimize instrument downtime – and to CombiPAL Headspace Syringes
prevent lost or compromised data caused
Volume (µL) Description Gauge Part No.
by septum leaks and liner contamination.
1 Fixed needle 23 G6500-80107
Replacement plunger G4200-80101
2.5 Fixed needle 23 G6500-80109
5 Fixed needle 23 G6500-80111

CTC recommends screw-top vials
CombiPAL Headspace Supplies
and caps for the tightest seal and the
most reproducible headspace results, Description Part No.
and the precision-thread vials and caps
listed are an excellent choice for 10 mL, screw top clear vial, 100/pk 5188-5392
dependability and ease of use. 20 mL, screw top clear vial, 100/pk 5188-2753
They are ideal for applications in the
10 mL, screw top amber vial, 100/pk 5188-6538
environmental, food and beverage,
industrial hygiene, drug analysis, 20 mL, screw top amber vial, 100/pk 5188-6537
and clinical chemistry industries. UltraClean 18 mm magnetic screw cap with silicone/PTFE septa 5188-2759
Liner, inlet for SPME, deactivated 5188-6471
CombiPAL Autosampler

Sample Introduction
Purge and Trap Supplies

Sparger
Compared to a frit sparger, the fritless sparger may be the better choice when a water
sample has a tendency to foam. This sparger is not appropriate for soil samples, which
tend to clog the capillary tube. Available in 1/2 and 3/4 in. mount sizes.
Glassware for Teledyne Tekmar Purge and Trap Concentrators,

1/2 in. Mount
5 mL frit sparger (glassware only) 5182-0852

Stratum PTC Sample Concentrator 5 mL frit sparger kit with fittings 5182-0846
25 mL frit sparger (glassware only) 5182-0851
25 mL frit sparger kit with fittings 5182-0845
5 mL fritless sparger (glassware only) 5182-0850
5 mL fritless sparger kit with fittings 5182-0844
25 mL fritless sparger (glassware only) 5182-0849
25 mL fritless sparger kit with fittings 5182-0796
5 mL needle sparger (glassware only) 5182-0848
5 mL needle sparger kit 5182-0795
25 mL needle sparger (glassware only) 5182-0847
25 mL needle sparger kit 5182-0794

Traps for Teledyne Tekmar Stratum Purge and Trap Concentrator
Trap, BTEX + MTBE 5188-8813

Trap (#5),OV-1/Tenax/Silica Gel/Charcoal 5188-8814
Trap (#8), Carbopak B/Carbosieve S-III 5188-8815
Trap (#9), Proprietory 5188-8816
Trap, Tenax/Silica Gel/Carbosieve S-III 5188-8817
Strat-Trap, Tenax/Silica Gel, #2 5188-8818
Strat-Trap,Tenax/Silica Gel/Charcoal, #3 5188-8819
Trap, VOCARB 3000 5188-8820
Trap, VOCARB 4000 5188-8821
Trap, BTEX 5188-8822
Traps for Teledyne Tekmar Velocity Purge and Trap Concentrator

Trap, Vocarb 3000 (K Trap) 5182-0775

Trap, Vocarb 4000 (I Trap) 5182-0774
Trap, Tenax (A Trap) 5182-0783
Trap, Tenax/Silica Gel/Charcoal (C Trap) 5182-0781
Trap, BTEX 5182-0773
DryFlow moisture trap 14-8911-003

Sample Introduction
Markes Thermal Desorption

Agilent now offers a comprehensive line of supplies for Markes Thermal Desorption (TD)
instrumentation. Thermal desorption allows the introduction of volatile and semi-volatile
compounds from a wide range of sample matrices, directly into a GC or GC/MS.
Markes Thermal Desorption Supplies

O-rings, Markes 7 mm cold trap seals 10/pk MKI-U-COV07

O-rings, Markes 6 mm cold trap seals 10/pk MKI-U-COV06
Markes Thermal Desorption system PTFE filter disks, 5.1 mm Markes TD 10/pk MKI-U-DISK1
PTFE filter disks, 6.3 mm Markes TD 10/pk MKI-U-DISK3
Spare general purpose carbon cold trap MKI-U-T11GPC
Sampling tube, Tenax TA, Markes Unity MKI-UTD-5105
Quick fit connectors, Markes Unity 10/pk MKI-C-QSC10
Stainless steel difflok cap, Markes Unity MKI-MTD-1169
Silcosteel difflok cap, Markes Unity MKI-MTD-1204
O-ring insertion tool, Markes Unity TDI MKI-Z-0285
O-ring extraction tool, Markes Unity TDI MKI-Z-0351
Cold trap alignment tool, Markes Unity MKI-UTD-5064
Cold trap, air toxics, C2-C14, Unity 2 MKI-U-T3ATX-2S
Cold trap, air toxics, C2-C14, Unity MKI-U-T3ATX
Cold trap, materials emissions, Unity MKI-U-T12ME
Cold trap, GP Carbon, C4/5-C30/32, Unity 2 MKI-U-T11GPC-2S
O-rings, 010 Markes Unity 10/pk MKI-U-COV10
Cold trap, materials emissions, Unity 2 MKI-U-T12ME-2S
Empty stainless steel TD tubes 10/pk C-TBE10

Markes Thermal Desorption Supplies
Tenex stainless steel tubes, preconditioned/capped 10/pk C-TBP1TC

Empty glass TD tubes 10/pk C-GT010
PTFE inserts 10/pk C-PL010
Long term TD tube storage caps 10/pk C-CF020
Cap-LOK Tool for long term storage caps C-CPLOK
Diffusive sampling caps 10/pk C-DF010
Bio-VOC breath samplers 10/pk C-BIO10
Disposable card mouth piece for Bio-VOC 10/pk C-B010M
Tenax TA 34-60 Mesh, 10 g C-TNXTA
General purpose hydrophobic tubes, stainless steel 10/pk C-HY010C
Preconditioned and capped with 1/4 in. brass storage caps.
For pumped sampling n-C5 to C20.
Tenax/S'carb 'Sulphur' tubes 10/pk C-102SSC

For odor and landfill gas analysis.
Carbograph 1 stainless steel tubes 10/pk C-TBP1C1C
For pumped C5-C14 plus diffusion of BTX.
Carb X stainless steel tubes 10/pk C-TBP1CXC

For pumped/diffusion 1.3-butadiene & benzene.
Universal stainless steel tubes 10/pk C-UN010C
Glass tubes with 1 cm Tenax 10/pk C-G1CM10
For direct liquid injection.
Glass air toxics (TO-17) tubes 10/pk C-GAT010C
Pre-packed with 2 carbon based sorbents preconditioned
and capped with 1/4 in. brass storage caps.
CRS BTX Standards, 1 µg 10/pk C-BTX1UG

Inlets
Be certain that you are accurately and predictably
introducing samples into your GC and GC/MS Systems.
Proper inlet selection and maintenance can significantly enhance the performance of your
chromatography system and, ultimately, your analytical method. It can also prevent
problems such as decomposition, flashback, and leaks that can compromise the integrity
of your results.
On the following pages, you will find…
• A concise introduction to the selection and use of GC inlets.
• A comprehensive inlet troubleshooting guide.
• A detailed discussion of optimal inlet settings.
You will also learn how to select the appropriate septa, liners, ferrules, and other
inlet supplies.

Premium Non-Stick Septa
Agilent premium non-stick inlet septa are designed and manufactured to provide a reliable
non-contaminating seal. Our tri-fold blister pack ensures that each septum remains clean
and ready to use.
• Proprietary plasma treatment prevents sticking and unnecessary inlet cleaning.
• Innovative blister package keeps each septum clean and ready for use.
• Center point guides the needle for easy penetration, less coring and longer life.
No Sticking or Clumping • Precision molding assures accurate fit in the inlet.
• Each batch is tested on an Agilent 6890 GC-FID for bleed.
Competitor
"non-stick" septa • Premium formulations selected for sealing and chromatographic cleanliness.
• No need to bake septa before using.
Summary of Premium Inlet Septum Characteristics

Septum Type Bleed Lifetime Temperature Limits
Non-Stick BTO ]]] ] to 400°C Injection port temp

(Bleed and Temperature Optimized)
Non-Stick Long Life ] ]]] to 350°C
Agilent plasma-treated non-stick septa Non-Stick Advanced Green ]] ]] to 350°C

]]] = best ]] = very good ] = good
Agilent's non-stick septa are plasma

treated, eliminating chemical bleed
and contamination caused by foreign
substances, like the damaging talcum
powder used by other suppliers.

Inlets
Bleed and Temperature Optimized Septa (BTO)

• Extended temperature range, lowest bleed.
• Maximum injection port temperature 400°C.
• Plasma coating eliminates sticking in the injection port.
• Pre-conditioned; ready to use.
• Blister packaging for cleanliness and convenience.
• Ideal for use with low-bleed, "Mass Spec" capillary columns.
Bleed and Temperature Optimized Septa (BTO)

11 mm septa 50/pk 5183-4757

11 mm septa 100/pk 5183-4757-100
BTO septa, 5183-4757
5 mm septa through-hole for on-column, in glass jar 50/pk 5183-4758
Comparison of Coring, With and Without CenterGuide (30x magnification)
High-Temperature Septa without CenterGuide

Major coring before 100 autoinjections
Agilent BTO Septa with CenterGuide

Very little coring even after 700 autoinjections

Advanced Green Septa
• True long-life, high temperature green septum.
• More injections per septum.
• Plasma coating eliminates sticking in the injection port.
• High-performance alternative to competitors' "Green" septa.


11 mm septa 50/pk 5183-4759
11 mm septa 100/pk 5183-4759-100
Advanced green septa, 5183-4759
5 mm septa through-hole for on-column, in glass jar 50/pk 5183-4760
Long-Life Septa
• The preferred septum for autosamplers.
• Pre-pierced for extended life and reduced coring.
• Ideal for overnight runs.
• Up to 400 injections per septum.
• Plasma coating eliminates sticking.
• Soft, 45 Durometer, easy on autosampler needles.
Long-Life Septa
11 mm septa 50/pk 5183-4761

11 mm septa 100/pk 5183-4761-100
Long-life septa, 5183-4761 5 mm septa through-hole for on-column, in glass jar 50/pk 5183-4762

Inlets
Septa Troubleshooting
Symptom Possible Causes Remedy
Extra Peaks/Humps Septum bleed Turn off injector heater. If extra

peaks disappear, use septum
specified for higher temperature
or analyze at lower inlet
temperature.
Baseline Change After Large Large leak at septum during Replace septum and use smaller
Peak injection and for a short time diameter needles.
thereafter (common with large
diameter needles)
Retention Times Prolonged Carrier gas leaks at septum or Check for leaks. Replace septum
column connection or tighten connections if
necessary.

Ferrules
Using the wrong ferrule or a worn-out ferrule to seal your column connection
can result in inconsistent and unreliable chromatography. An improper ferrule can cause
leaks which allow air and other contaminants to enter the instrument through the column
seal, causing major interference with column and detector performance.
For optimum performance, ferrules should be replaced every time the column is replaced
and when performing column maintenance.
To minimize problems, follow these general techniques for ferrule installation:
• Don't overtighten – finger tighten the column nut, then use wrench to tighten.
• Maintain cleanliness.
• Bake out ferrules prior to use (Vespel and Vespel/Graphite only).
• Avoid contamination, such as fingerprint oils.
• Inspect used ferrules with magnifier for cracks, chips, or other damage before
reusing them.
• Change ferrules when new columns or injector/detector parts are installed.
Vespel/Graphite ferrules, 5181-3323
Tips & Tools

Look for the following signals that indicate ferrule damage:
• Background noise from oxygen diffusing into the system
• Column bleed catalyzed by oxygen
• Sample degradation
• Sample loss
• Increase in detector signal/noise
• Poor retention time reproducibility

Inlets
Ferrule Selection Recommendations

Ferrule/ Seal Type Upper Temp. Usages Advantages Limitations
Limit
Graphite (100%) 450°C • General purpose for • Easy to use stable seal. • Not for MS or oxygen
capillary columns. • Higher temperature limit. sensitive detectors.
• Suitable for FID and NPD. • Can be removed easily. • Soft, easily deformed
• Recommended for high or destroyed.
temperature and cool • Possible system contamination.
on-column applications.
Vespel/Graphite (85%/15%) 350°C • General purpose for • Mechanically robust. • Not reusable.
capillary columns. • Long lifetime. • Flows at elevated temperature.
• Recommended for MS and • Must retighten frequently.
oxygen sensitive detectors.
• Most reliable leak-free
connection.
Vespel (100%) 280°C • Isothermal operation. • Mechanically robust. • Leaks after temperature cycle.
• Can be reused or • Long lifetime. • Flows at elevated temperature.
removed easily. • Can be reused or • Must retighten frequently.
• Excellent sealing material removed easily.
when making metal or glass
connections.
SilTite (100% metal) N/A • Use with Capillary Flow • Provide leak-tight seals with • Not reusable.
Technology nut kits Ultimate Union, Deans Switch
and Effluent Splitter
Tips & Tools

When using Vespel/Graphite ferrules, tighten the column nut 1/4 turn after
the first temperature program runs. Even preconditioned ferrules can
exhibit some shrinkage after a temperature programmed run.

Capillary Column Ferrules
Ferrule ID (mm) Column ID (mm) Unit Part No.
General Purpose Graphite Ferrules (Short)

0.5 0.1, 0.2, 0.25, 0.32 10/pk 5080-8853
0.4 0.05, 0.25 10/pk 500-2114
0.8 0.45, 0.53 10/pk 500-2118
1.0 0.53 10/pk 5080-8773
85% Vespel, 15% Graphite Ferrules (Short)

0.4 0.1, 0.2, 0.25 10/pk 5181-3323
0.5 0.32 10/pk 5062-3514
0.8 0.45, 0.53 10/pk 5062-3512
Preconditioned 85% Vespel, 15% Graphite Ferrules (Long)*

Graphite ferrules, 5080-8853 0.3 0.1 10/pk 5062-3507
0.4 0.1, 0.2, 0.25 10/pk 5062-3508
0.5 0.32 10/pk 5062-3506
0.8 0.53 10/pk 5062-3538
100% Vespel, High Performance Ferrules (Short)**

0.4 0.1, 0.2, 0.25 10/pk 5181-3322
0.5 0.32 10/pk 5062-3513
0.8 0.45, 0.53 10/pk 5062-3511
Tips & Tools Specialty Ferrules, 85% Vespel, 15% Graphite
100% Vespel ferrules should only be Two Hole

used for isothermal applications. 0.4 0.1, 0.2, 0.25 10/pk 5062-3580
0.5 0.32 10/pk 5062-3581
No hole 10/pk 5181-3308
High Temp PTV Inlet, SS/Graphite

0.4 0.320 10/pk 5188-5315
0.4 0.530 10/pk 5188-5314
*These ferrules are recommended for use with Agilent GC/MS Transferlines with the 05988-20066 MS
interface column nut.
**These ferrules are recommended for use in isothermal analysis only.

Inlets
SilTite Metal Ferrules

For use with 0.25 mm ID capillary columns 10/pk 5188-5361

For use with 1/16 in. OD stainless steel tubing 10/pk 5184-3571
Includes 2 column nuts
Column Nuts
Short Nuts
Universal column nut, 1/16 in. hex, 2/pk 5181-8830
Finger tight column nut for 530 µm columns* 5020-8293
Universal column nut, 5181-8830 Finger tight column nut for 320 µm columns and smaller* 5020-8292
Blanking plug, finger-tight style 5020-8294
6850 column nut, 2/pk 5183-4732
Extended column nut, VI inlet G3504-20504
High Temp SimDis PTV Inlet, 4 mm hex 5188-5312
Long Nuts
MS interface column nut, female 05988-20066
Column nut for long or long two-hole ferrules 05921-21170
Accessories
Open end wrench, 1/4 and 5/16 in. 8710-0510
*For use with graphite ferrules only

Capillary Flow Technology Supplies
Agilent offers a family of GC accessories based on our proprietary Capillary Flow
technology. These accessories increase system productivity and performance:
• QuickSwap MSD interface provides vent-free removal of columns.
• Deans Switch device simplifies the analysis of complex samples.
• Purged Effluent Splitter for inert, leak-free column effluent splitting.
Fittings, Ferrules and Supplies

For leak-free, low dead volume and inert column connections with capillary flow
accessories, such as the Deans Switch or QuickSwap MSD Interface, use only Siltite
ferrules and specified nuts. For Capillary Flow devices, use deactivated fused silica
Capillary Flow fittings
tubing. Do not use tubing that has been coated with stationary phase.
Fittings, Ferrules and Supplies

Internal nut G2855-20530

Swaging nut G2855-20555
Column storage fitting G2855-20590
Fused silica, deactivated, 0.15 mm x 1 m 160-2625-1
SilTite Metal Ferrules, 0.10-0.25 mm ID capillary columns 5188-5361
SilTite Metal Ferrules, 0.32 mm ID capillary columns 5188-5362
SilTite Metal Ferrules, 0.53 mm ID capillary columns 5188-5363

Inlets
Split/Splitless Liners
Injection port liners have a variety of features to help vaporize the sample so that a true
representation of the sample enters the column. Additionally, Agilent liners are individually
packaged to maintain cleanliness until used. The part number and lot are silk screened
on the liner for quality control and user convenience, and lot tracking is available for
quality assurance.
Dimensions
Agilent liners are made to precise tolerances to ensure GC system accuracy and
reproducibility. Controlling the dimensions of the glass provides better consistency from
liner to liner, resulting in more reproducible results.
Tips & Tools Outer Diameter (OD)

Tight control of liner dimensions is Splitless injection liners have a larger OD with a tight fit to improve analyte recovery and
critical to reproducibility of GC results. limit sample migration out of the liner onto the metal surface of the inlet. Smaller OD
liners are used with split injection because there is less resistance to carrier and split flow
in the inlet.
Internal Diameter (ID)

Internal Diameter creates the space for the sample to be vaporized. The sample vapor
must be small enough to fit within the volume of the liner to avoid backflash, loss
of sample into the septum purge, or split lines, which result in reduced reproducibility
and sensitivity.
Length
Tight tolerances of liner length are needed to control internal volume and ensure proper
sealing between the septum and the inlet seal. Length can also be critical for more
repeatable positioning in the inlet relative to the inlet bottom since many analysts install
liners by measuring the distance from the O-ring to the top of the liner. Agilent has
designed liners with precise glass bumps on the bottom of the liner to automatically
position the liner in the inlet for greater reproducibility.

Tapers
None Bottom Tapers Dual Tapers
Straight tubes used in split • Directs sample onto head • Contain sample within glass
injection with autosamplers. of column and limits analyte liner limiting contact with
exposure to bottom of inlet. metal inlet surface.
• Minimizes decomposition • Thought to limit loss through
and discrimination. septum purge.
Glass Wool
• Less discrimination.
• Provides additional surface area for sample vaporization, increasing reproducibility.
• Serves as a trap for non-volatiles.
For split liners, Agilent specifies the placement of glass wool in the liner so that the
syringe penetrates the glass wool, wiping the syringe, to provide the most repeatable
results with Agilent autosampler and split/splitless inlet design thermal profile.
Even though it is deactivated, glass wool is considered the most active component
of a liner, increasing the possibility of adsportion and sample decomposition of
active compounds.
Liners with glass wool are not recommended for samples with active analytes – such as
phenols, amines, organic acids, pesticides and drugs of abuse – that could be irreversibly
adsorbed on surfaces in the inlet.
Deactivation
Agilent's proprietary deactivation is more resilient to degradation than other commercial
processes. With use, even deactivated liners become active. Replace the liner regularly.
Splitless liner, double taper, 5181-3315

Inlets
NEW! Agilent MS Certified Liners

Agilent MS Certified Split and Splitless Liners are manufactured and tested to our highest
level of scrutiny to assure reproducibility.
We have built years of experience into the MS Certified Liners to provide the quality
and consistency needed for critical applications, especially those using esterification
agents for trace level analysis such as toxicology or drugs of abuse applications.
• Geometrical dimensions and tolerances of the glass are controlled by Statistical Process
Control (SPC) with 100% Go-No-Go check.
• Glass wool is pre-qualified with mass spectrometry, then inserted using a unique
manufacturing procedure to improve reproducibility.
• Deactivated MS Certified Liners are treated with Agilent's proven proprietary deactivation
process developed to last longer than other commercially available treatment.
• Random samples of MS Certified Liners are tested using both FID and MSD analysis of
challenging probes to evaluate Acid/Base deactivation, response linearity, peak
symmetry, and bleed and background noise.
• Each Agilent MS Certified Liner is traceable by the lot codes silk screened on the liner.
MS certified split liner, 5188-6576

Agilent Split Liners
Agilent Single Taper Split Liners are made to strict dimension specifications for optimal
inlet performance and feature the tightest tolerances for OD, ID, taper, and glass wool
placement. For ease of use and reproducibility, the liners have a positioning bead,
a restriction to secure the position of the glass wool, and a feature to consistently
self-position to the recommended height. The liners also feature Agilent's
proprietary deactivation.
Agilent recommends part number 5183-4647 as the top split liner choice for:
• Highest run-to-run area reproducibility
• Least discrimination for wide boiling point range samples
• Useable with widest range of conditions and sample types
• Easy self-adjusting installation

Agilent Split Liners
Description 1/pk 5/pk 25/pk
Single Taper Split Liners

Single taper, glass wool, deactivated, low pressure 5183-4647 5183-4701 5183-4702
drop
Single taper, MS certified liner with restriction to hold 5188-6576
glass wool
Single taper, glass wool, deactivated 5183-4711 5183-4712 5183-4713
Straight Split Liners

Straight, glass wool, non-deactivated 19251-60540 5183-4691 5183-4692
Straight, MS certified liner with glass wool 5188-6574 5188-6569
Agilent Splitless Liners

Agilent's proprietary deactivation is important for splitless liners because of the longer
sample/liner contact time in splitless mode.
When deciding between a liner with or without glass wool, choose a liner without
glass wool if your sample contains non-volatiles or analytes within a wide boiling range.
For unknown samples, use a liner without glass wool to avoid loss of active or labile
compounds. Agilent recommends first trying a liner without glass wool; use glass wool
as a second choice.
Agilent Splitless Liners

Single taper, deactivated 5181-3316

Single taper, glass wool, deactivated 5062-3587
Single taper, MS certified liner with glass wool 5188-6568
Agilent splitless liners
Double taper, deactivated 5181-3315

Inlets
Direct Connect Liners

Agilent's Direct Connect Liners provide maximum recovery and minimal decomposition
of active compounds for methods requiring splitless injection, such as EPA 8270. They
are best for relatively clean samples containing active analytes, such as water extracts.
The liners directly connect with the column, similar to press-fit connectors, to aid complete
transfer of sample onto the column, eliminating the problem of inlet discrimination
and further increasing sensitivity.
Direct Connect Liners

Single taper, Agilent proprietary deactivation G1544-80730

Dual taper, Agilent proprietary deactivation G1544-80700
Single taper, Deactivated, Inert G1544-80731
Direct Connect liners
Helix Liners
Helix liners approximates the benefit of glass wool without the activity. The deactivated
glass spiral gives surface area without glass wool's active sites to vaporize and mix
sample before getting onto the column, and prevents sample from splashing onto
the bottom of liner and seal. Helix liners are recommended for slower injection speeds.
Helix Liners
Helix open ended, deactivated 5188-5396

Helix double taper, deactivated 5188-5398
Helix single taper, deactivated 5188-5397
Helix liners

Split/Splitless Inlets
The combined split/splitless inlet is the most popular inlet for capillary column gas
chromatography. Because it can be used in either split or splitless mode, it provides a very
effective combination that can cover most analysis requirements.
Split Inlet Troubleshooting

Split inlets are spared from most band-broadening phenomena, since the splitting process
generates narrow peaks. Peak broadening or tailing is usually due to:
• Improper column installation.
• Low inlet temperature.
• Low split flow, (<20 mL/min on 6890).
• Inlet and needle discrimination and decomposition.
If your results are inaccurate or inconsistent:

• Check the column and reinstall if necessary.
• Increase inlet temperature by 50°C and compare results.
• Check inlets and needles for wear and replace as necessary.
Tips & Tools

For the most reproducible split injection results, try Agilent's low pressure drop
split liner (part number 5183-4647), with built in positioning bead, tight
dimension tolerances, glass wool placement and proprietary deactivation.

Inlets
Splitless Inlet Troubleshooting

Most problems encountered with a splitless injection are related to:
• Incorrect purge time
• Degradation
• Improper focusing
• Inappropriate column temperature
• Flashback
You can also improve the reproducibility and linearity of peak areas and avoid backflash
by matching:
• Inlet temperature
• Liner volume
• Injection volume
Decomposition
Loss of peak area or generation of new peaks, can sometimes be dramatically reduced by
changing liner type or by deactivating the liner and inlet with silanizing reagents.
Removing or reducing the amount of liner packing can also decrease inlet activity.
Column Troubleshooting
Normal Peaks Tailing Solvent Peaks Wrong Peak Ratios

Correct column positioning in Column positioned incorrectly Column positioned in the inlet
both injection port and FID in the injection port of (either too far or not far
possible ferrule particle in enough; verify 4-6 mm
the carrier gas flow path installation distance)

Split Mode Variables, Practices and Rationales
Parameter Selection/Setting Rationale
Inlet temperature Try 250°C or BP of last eluting Ensures flash vaporization

compound Minimizes inlet discrimination
Inlet liner Large volume, deactivated Minimizes flashback
Minimizes degradation
Inlet packing Silanized glass wool Retains non-volatiles
Minimizes inlet discrimination
Glass beads or frit Less active than wool
None Least active
Injection volume 0.5-3 µL liquid Split easily adjusted
0.10-10 mL gas Split adjusted accordingly
Injection technique Fast autoinjection Less needle discrimination
Hot-needle fast manual injection Reproducible discrimination
Split ratio 50:1 to 500:1 Depends on sample and injection
volume, and column ID
Initial column temperatures Not critical Narrow initial peaks
Septum purge 2-3 mL/min Minimizes ghosting
Split liner, 5183-4647

Inlets
Splitless Mode Variables, Practices and Rationales

Inlet temperature Just above highest boiling point Ensures flash vaporization
of solutes (+20°C) Reduce if degradation occurs
Use higher for dirty samples and
higher-boiling solutes
Inlet liner Large volume > 0.8 mL Use with autoinjector
Small volume < 0.2 mL Use only for slow manual
injections and gas injections
Inlet packing None Use only with slow injection
Decreases degradation
Silanized glass wool Use for fast autoinjection and
dirty samples
Injection volume 0.5 - 2 µL liquid Depends on solvent, liner and
conditions
Injection technique Fast autoinjection Most reproducible
Hot-needle slow manual Less needle discrimination
Hot-needle fast manual Inject 1 - 2 µL/sec if narrow liner
is used and > 1 µL injection
Use for < 1 µL injections
Purge flow 20 - 50 mL/min Higher if using constant flow
Purge delay time 20 - 80 sec Adjust according to column flow
rate/liner type and sample
conditions
Oven temperature 10 - 25°C below solvent BP Necessary for solvent focusing
Column flow > 2 mL/min when possible Clears inlet fast
Reduces backflash and
decomposition
Septum purge 2 - 3 mL/min Reduces ghosting
Quantification Internal standard Maximizes reproducibility
External standard addition Use only with constant injection
volume
Retention gap 1 - 3 m, deactivated Reduces peak distortion
(1 - 2 m per µL injected) Promotes solvent and stationary
phase focusing

Flip Top Inlet Sealing System
Agilent's Flip Top Inlet Sealing System is the faster, smarter way to change inlet liners
on Agilent GC's.
• Cuts liner replacement time to as little as 30 seconds.
• Eliminates frustrating searches for special wrenches or tools.
• Improves inlet ergonomics – no more handling of heated parts, no more burns or scrapes.
• Decreases downtime and increases productivity.
• Minimizes exposure to ambient air extending column life.
• Installs easily in 15 minutes (customer installable).
Available exclusively from Agilent, the Flip Top has a levered arm that attaches to any
6890/6850/5890 insert weldment and locks to the injection port using an adapter ring
screwed onto the inlet. Once installed, the user simply lifts the arm of the Flip Top which
releases the insert weldment from the injection port, and allows instant access to the liner.
The process is simply reversed to reseal the weldment to the port.
Flip Top Inlet Sealing System

Flip Top Inlet Sealing System 5188-2717

For 6890, 6850, 5890 only; Not compatible with 7890
Non-Stick Fluorocarbon Liner O-ring for Flip Top, 10/pk 5188-5366
For more information about the

Flip Top Inlet Sealing System, visit
www.agilent.com/chem/fliptop

Inlets
7890 Turn Top Inlet System

Convenient new turn top design is built into each 7890 split/splitless inlet, allowing you to
change liners in less than 30 seconds without special tools or training.
7890 Turn Top Inlet System

Turn top G3430-40035

Split ring 0510-1306
Turn top G3430-40035

Changing the Split Vent Trap*
1. Remove the retaining clip.
2. Remove the old filter cartridge and two O-rings.
3. Verify the new O-rings are seated properly on the new filter cartridge.
4. Install the new filter cartridge then reassemble the trap. Do not fully tighten yet.
5. Place the filter trap assembly in the mounting bracket and install the retaining clip.
6. Fully tighten the split vent front weldment onto the trap.
Warnings & Caution 7. Check for leaks.
The split vent trap may contain *Change every 6 months
residual amounts of any samples
or other chemicals you have injected
into the GC. Follow your company’s O-ring
Filter cartridge
safety procedures for handling these O-ring
types of substances while replacing
the trap filter cartridge.
Split vent trap, part number 5188-6495
Installing a Capillary Column in a Split/Splitless Inlet

1. Prepare the column for installation.
Insulation cup 2. Position the column so it extends 4 to 6 mm past the end of the ferrule.
Reducing nut 3. Slide the septum to place the nut and ferrule in the correct position.
Capillary column 4 to 6 mm 4. Insert the column in the inlet.
Ferrule (inside nut) 5. Slide the nut up the column to the inlet base and finger tighten the nut.
Inlet column nut 6. Adjust the column position so the septum is even with the bottom of the column nut.
7. Tighten the column nut an additional 1/4 to 1/2 turn. The column should not slide with
Septum a gentle tug.
8. Start carrier gas flow.
9. Verify flow by submerging the free end of the column in isopropanol. Look for bubbles.

Inlets
7890/6890/6850 Split/Splitless Inlet Supplies

Item Description Unit Part No.
QuickPick Split Vent and Inlet PM Kit 5188-6496

QuickPick Splitless Vent and Inlet PM Kit 5188-6497
1 Headspace septum retainer nut 18740-60830
Septum retainer nut 18740-60835
2 11 mm non-stick BTO septa 50/pk 5183-4757
For complete offering of liners, see pages 58-59
3 7890 Insert Weldment
Top insert assembly, standard G3452-60730
Top insert weldment assembly, headspace G3452-60100
Top insert, AC gang fitting weldment G3430-60011
Top insert assembly, valve G3480-67585
6890 Insert Weldment
S/SL insert weldment. Used with large charcoal canister type G1544-60585
filter, for 6890/6850
S/SL insert assembly for G1540A with valved system option. G1580-60585
This insert assembly uses the large charcoal canister split
vent filter, for 6890/6850
Similar to G1544-60575 except carrier lines separated for G1580-60575
interface to valved systems of a G1540A instrument
Original standard EPC using 1/4 in. split vent filter G1544-60575
Similar to G1544-60575 except allowed insertion for 1/4 in. G1544-80580
chemical filters to clean carrier gas for ECD operation
Insert Weldment Standard manual pneumatics 19251-60575
Split/Splitless Inlet assembly 4 Certified non-stick fluorocarbon O-ring 10/pk 5188-5365
Graphite O-ring for Split liner 10/pk 5180-4168
Graphite O-ring for Splitless liner 10/pk 5180-4173
For complete offering of premium septa, see pages 47-48
Inlet gold seal
Gold seal side view 5 Split liner, single taper, low pressure drop, glass wool 1/pk 5183-4647
25/pk 5183-4702
Washer
Splitless Liner, single taper 1/pk 5181-3316
25/pk 5183-4696
Reducing nut
Gold seal on the split/splitless inlet

7890/6890/6850 Split/Splitless Inlet Supplies
6 Split vent trap kit1 G1544-60610

Replacement cartridge for P/N G1544-60610 G1544-80530
Split vent trap assembly G1544-80550
7 Retaining nut G1544-20590
8 Stainless steel seal 18740-20880
Certified gold plated seal kit, includes washer2 5188-5367
Replacement for 18740-20885
Gold-plated seal with cross3 5182-9652
9 Washers, 0.375 OD 12/pk 5061-5869
10 Reducing nut 18740-20800
Washers, 5061-5869
11 Insulation Kit, 3 pieces 5188-5241
12 Lower insulation cover 19243-00070
13 Ferrules see page 52
14 Universal column nut 2/pk 5181-8830
6850 column nut 2/pk 5183-4732
Split/splitless septum nut angled wrench 19251-00100
Flip Top Inlet Sealing System 5188-2717
For 6890, 6850, 5890 only; Not compatible with 7890
Reducing nut, 18740-20800
Capillary Inlet Supplies Kit, Includes: 5181-8838
Certified gold plated seal kit, includes washer 5188-5367
Liner, split, straight, glass wool, non-deactivated 4 each* 19251-60540
Liner, splitless, single-taper, glass wool, deactivated 2 each* 5062-3587
Certified non-stick fluorocarbon O-ring 10/pk* 5188-5365
Liner, direct, 2 mm ID, deactivated 5181-8818
Certified gold inlet seal, 5188-5367
11 mm non-stick BTO septa 50/pk* 5183-4757
Capillary inlet cleaning wires 5/pk* 5180-4153
1Order replacement cartridge G1544-80530 at same time
2Use with total inlet flow rates of less than 200 mL/min
3Use with total flow rates of greater than 200 mL/min
*Quantity when part ordered individually

Inlets
Cool On-Column Inlets

Cool on-column injection is superior in many ways to other sample introduction
techniques. Advantages include:
• Elimination of sample discrimination.
• Elimination of sample alteration.
• Solvent focusing of early eluting solutes.
• High analytical precision.
Sample Considerations
Sample preparation is important for on-column injection because of:
• The potential for column overload, column contamination.
• The incompatibility of some solvents with the stationary phase.
• Dependence of the initial column temperature on the boiling point of the solvent.
Many of the problems associated with these variables can be resolved by using
a retention gap ahead of the analytical column.
Troubleshooting
Only columns with an immobilized stationary phase should be used with cool on-column
injection as this prevent displacements of the stationary phase by solvents. But problems
can still arise due to:
• Column overload.
• Solvent/stationary phase incompatibility.
• Column contamination.
Here are some ways to improve overall performance:

• Prevent broad or split peaks caused by a long flooded zone with a retention gap.
• Use columns with an immobilized stationary phase to prevent displacement of
stationary phase by solvents.
• Wash immobilized stationary phases to remove contaminants.
• Use a retention gap for injections of dirty samples.

Cool On-Column Inlet Practices and Rationales
Initial inlet temperature Equal to or 3°C above column Ensures sample focusing in
oven temperture solvent front
Initial inlet temperature ramp Same as oven (oven track) Simple and effective
Faster than oven Narrows initial peak width
Injection volume 0.1 - 2.0 µL liquid Use smaller injections for small
ID columns
Depends on column capacity
Injection technique Automatically slower injection Projects droplets away from
Fused silica needle syringe tip
Use for manual injection into
small ID columns
Tips & Tools Oven temperature Inlet temperature or slightly Prevents backflash
lower
There are some limitations to
cool on-column inlets, including Column flow 50 - 80 cm/sec Use for H2 carrier gas
the following: 30 - 50 cm/sec Use for He carrier gas
Septum purge 12 - 15 mL/min Use if installed to prevent
• Maximum sample volumes
ghosting
are smaller compared with other
inlets (0.5 µL to 2.0 µL). Quantification All methods Inherently reproducible technique
Lack of discrimination
• Solute peaks eluting just before
the solvent cannot be focused Retention gap requirements 1 - 3 m, deactivated Corrects peak distortion
and are difficult to determine. 530 µm Protects column from non-
volatile components
• Capilliary columns (especially those Permits autoinjection with
with a large phase ratio or small narrow-bore columns
inner diameter) can be easily
overloaded with sample.
• Parameters such as initial column
temperature, solvent nature,
and injection rate must often
be optimized.

Inlets
Syringe Installing a Capillary Column into a Cool On-Column Inlet

Insert 1. Gently insert the column into the inlet until it bottoms.
Column 2. Insert the column nut into the inlet fitting and finger tighten.
3. Tighten the column nut an additional 1/4 turn with a wrench or until the column does
not move. Use two wrenches to support inlet (5/16 in. and 1/4 in.).
4. If using an automatic injection system with a 0.25 mm or 0.32 mm column, verify that
the column installation by manually pushing the syringe into the inlet.
Checking the Needle-to-Column Size on the Cool On-Column Inlet

1. Check the needle-to-column size to make certain that the needle fits in the column.
2. Identify the correct insert for the column size. Use the insert that is the same size as
the syringe needle to verify that the column you plan to use is the correct size.
3. Insert the column into one end of the insert.
4. Insert the syringe needle through the other end of the insert and into the column.
If the needle cannot pass easily into the column, reverse the insert to try the needle
and column in the other end.

Changing the Septum on the Cool On-Column Inlet
1. Replace the septum.
If you are using a septum nut, grasp the knurling and unscrew. Remove the old septum
with tweezers. Use tweezers to install a new septum. Push the septum into the septum
nut until properly seated. Firmly tighten the nut.
If you are using a cooling tower, grasp the three rings and unscrew. The spring
and duckbill septum may pop out of the inlet when you remove the cooling tower.
Be careful not to lose them. If they do not pop out, use a thin wire to remove them
from the inlet. Insert the replacement duckbill septum into the spring and place in
the inlet. Reattach the cooling tower assembly, then finger tighten.
2. Before making an injection, check the alignment of the entire assembly using the
proper size syringe.
3. Restore the analytical method.
4. Reset the septum counter.
For 250/320-µm For 530-µm For manual 200-µm injections

automated injections automated injections with fused silica needle

Inlets
7890/6890 Cool On-Column Inlet Supplies

Automatic Injection
1a Septum nut base for 320 mm assembly 19245-80521
1b Septum nut base for 530 mm assembly G1545-80520
1a
1b 1c
1d 2 Advanced Green Inlet Septa, 5 mm 50/pk 5183-4760
BTO Inlet Septa , 5 mm 50/pk 5183-4758
Manual Injection
2
3 1c Cooling tower assembly 19320-80625
4
1d Duck bill 10/pk 19245-40050

Fused silica syringe needles 6/pk 19091-63000
On-column syringe, fused silica (barrel only) 9301-0658
Common Supplies
3 Spring 19245-60760
4 Inserts for capillary columns
For 200 µm columns, 1 ring 19245-20510
For 250 µm columns, 6 rings 19245-20515
5 For 320 µm columns, 5 rings 19245-20525
6
For 530 µm columns, no rings 19245-20580
Cool On-Column Inlet assembly
For 530 µm Al clad columns, 4 rings 19245-20780
5 320 µm, 0.5 mm ID graphite ferrule 5080-8853
6 Universal column nut 2/pk 5181-8830

Column/Retention Gap Installation Supplies
Ultimate union kit, deactivated G3182-61580

Ultimate union kit, non-deactivated G3182-61581
Universal column nut 2/pk 5181-8830
SilTite metal ferrules, 0.10-0.25 mm ID capillary columns 10/pk 5188-5361
SilTite metal ferrules, 0.32 mm ID capillary columns 10/pk 5188-5362
SilTite metal ferrules, 0.53 mm ID capillary columns 10/pk 5188-5363
SilTite metal ferrules for 1/16 in. OD tubing 10/pk 5184-3571
250 µm graphite ferrule 10/pk 500-2114
250 µm retention gap, one 5 m piece 160-2255-5
Ultimate Union
Deactivated quartz column connector 5/pk 5181-3396

Inlets
Purged Packed Inlets

Packed column analysis is frequently done when high efficiency separations are not
needed or when gases are analyzed by gas-solid chromatography. Purged packed inlets
are simple in both design and use. Few parameters need to be set, and all carrier gas
flow flushes through the inlet into the column in the standard configuration.
Purged Packed Inlet Practices and Rationales

Inlet temperature BP of solvent +50°C Ensures flash vaporization

BP of major solute(s) Use for neat samples
Insert type 1/8 in. stainless steel Use for stainless steel column
1/4 in. stainless steel only
530 µm Inserts permit connection of
columns up to 1/4 in. OD
Liner Glass Use to lower activity
(replaceable)
Initial column temperature Temperature programming Sharpens peaks and reduces run
time
Column type 1/8 in. packed stainless Will not break
1/4 in. packed glass Better for polar or labile
530 µm compounds
Carrier gas flow 10-40 mL/min Use with N2 carrier gas
10-60 mL/min Use with He or H2 carrier gas

Purged Packed Inlet Troubleshooting
Purged packed inlets are active, have low volume and are generally flow controlled.
This means that most packed column inlet problems involve sample decomposition,
flashback, or leaks.
Decomposition
Diagnose inlet sample decomposition by comparing retention times for decomposition
products to their standard retention times. Then try these options to improve results:
• Intracolumn direct injection.
• Deactivated glass liners.
• Lower inlet temperatures.
• Remove column packing in the inlet zone.
• Increase flow rates.
Flashback
Large sample injections can exceed liner capacity and flash back into the gas supply lines
and onto the septum. This can cause:
• Ghost peaks.
• Sample losses.
• Irreproducible peak areas.
• Decomposition.
Leaks
Septum and column leaks can cause column degradation and stationary phase
decompositions on flow-controlled column inlets.
• Change the septum on a regular basis and check column connections to help
eliminate leak holes.
• Keep the oven and inlet at room temperature when not in use or while changing
the septum.

Inlets
Septum nut 7890/6890/6850 Purged Packed Inlet Supplies

Merlin cap
Merlin Microseal
Septum QuickPick Purged Packed Inlet PM Kit 5188-6498
Top insert weldment Includes 5 non-stick BTO septa, 1 O-ring, 1 ferrule, and 1 disposable
O-ring glass liner
Merlin Microseal 5182-3444
Glass liner
Microseal high pressure nut 5182-3445
11 mm non-stick BTO septa 50/pk 5183-4757
Top insert weldment 19243-80570
O-ring, Fluorocarbon 12/pk 5080-8898
Disposable glass liner, 170 µL internal volume 25/pk 5080-8732
Ferrule Disposable glass insert, deactivated 5/pk 5181-3382

Adapter nut Ferrule, 1/4 in. Vespel 10/pk 5080-8774
Adapter
1/4 in. nut, brass 10/pk 5180-4105
530 µm column adapter for use with glass liners 19244-80540
1/8 in. column adapter for use with glass liners 19243-80530
1/4 in. column adapter for use with glass liners 19243-80540
Insulation
Insulating cup 19234-60720
Insulation cup
Ferrule
Column nut
Nuts and Ferrules for 1/8 in. Packed Columns
Purged Packed Inlet assembly Description Unit Part No.
1/8 in. stainless steel nut and ferrule set 20/pk 5080-8751
1/8 in. brass nut and ferrule set 20/pk 5080-8750
Vespel/graphite ferrule, 1/8 in. 10/pk 0100-1332
Top insert weldment
Flared end
Glass liner
Glass Liner on Purged Packed Inlet

Programmed Temperature Vaporizer
(PTV) Inlets
PTV inlets combine the benefits of split, splitless and on-column inlets. The sample
is usually injected into a cool liner, so syringe needle discrimination does not occur.
Then the inlet temperature is increased to vaporize the sample. The user programs vent
times and temperature to achieve the equivalent of split or splitless transfer of sample
vapors to the column. PTV injection is considered the most universal sample introduction
system because of its flexibility.
Advantages
• No syringe-needle discrimination
• Minimal inlet discrimination
• Use of large injection volumes
• Removal of solvent and low boiling components
• Trapping of nonvolatile components in liner
• Split or splitless operation
• Retention time and area reproducibility approaching cool on-column injection
PTV inlets are actively cooled before and during injection by Peltier devices or by forced
gases (air, liquid N2, or liquid CO2). Cryogenic cooling of the inlet can reduce inlet
temperature enough to thermally focus gas injections from other sampling devices
in the liner. This is a distinct advantage of using PTV inlets in comparison to conventional
inlets for coupling auxiliary sampling devices to capillary columns.
Post-injection, PTV inlets are heated using electrical heaters or preheated compressed
air. Depending on design, inlet temperature ramps are either ballistic (i.e., ramped
to the maximum temperature at an uncontrolled maximum rate) or programmable.

Inlets
PTV Inlet Practices and Rationales (cold split/splitless modes)

Injection mode Cold split For general use and sample

Cold splitless screening
Cold solvent vent For trace analysis
LVI
Inlet temperature ramp rate Adjustable (i.e., 2°C/sec to Use slower ramp rates for labile,
720°C/sec max) complex, or large volume
samples
Use faster ramp rates for most
samples
Use faster ramp rates to shorten
splitless purge delay time
Ballistic Simpler, less expensive
instrumentation
Inlet liner Straight with silanized wool For general use
Baffled For labile samples
Packed with an adsorbent For focusing gaseous injections
from auxiliary sampling devices
Injection volume 0.1 - 1.5 µL Use lower volumes for volatile
5 - 50 µL for LVI solvents and fast ramp rates
Use volumes larger than 1.5 µL
only in solvent-elimination mode
Sample Injection technique Autosampler or manual, fast or Not critical for cold split and
slow splitless modes
Oven temperature 10 - 25°C below solvent BP For proper solvent effect in
Sample dependent splitless mode
For split mode
Column flow 30 - 50 cm/sec Clears inlet faster
Less backflash
Septum purge 1 - 5 mL/min Minimizes ghosting
Quantification Any method Inherently reproducible
Low discrimination in cold
injection modes
Retention gap 1 - 3 m, deactivated Compensates for extended
flooded zone and solvent-column
incompatibility

7890/6890 PTV Inlet Supplies
Description Column ID (mm) Unit Part No.
Microseal high pressure nut 5182-3445

Merlin Microseal 5182-3444
Septumless head G2617-60507
Septum head G2618-80500
PTV inlet assembly G2617-60506
PTV LC02 cooling jacket G2617-60508
PTV LN2 cooling jacket G2619-60501
Silver seal 5/pk 5182-9763

Graphpack 2M inlet adapter 0.20 5182-9754
0.25-0.33 5182-9761
0.53 5182-9762
Ferrules for Graphpak 2M inlet 0.20 5182-9756
0.25 5182-9768
0.32 5182-9769
0.53 5182-9770
Replacement Graphpak column nut 5062-3525
PTV insulation block G2617-20510
PTV Cryo insulator G2617-60510
Teflon ferrule (needle seal) 10/pk 5182-9748
Kalrez seal 5182-9759
Valve body 5182-9757
Pressure spring 5182-9758
Viton seal 5/pk 5182-9775
Sealing element 5182-9760
CO2 Cryo inline filter 3150-0602
Service kit for septumless head 5182-9747

Contains Kalrez seal, valve body, and pressure spring
Graphpak 3D ferrules 5/pk 5182-9749
Assembly tool for Graphpack 3D ferrules G2617-80540

Inlets
Guide cap
Merlin cap Septum nut
PTFE ferrule
Merlin Microseal
Septum
Septumless head Kalrez seal
assembly
Valve body
Pressure spring
Septum head
Viton seal
Carrier gas tube Sealing element
Graphpak 3D ferrule
Liner
PTV inlet assembly
Silver seal
Graphpak inlet adapter
Ferrule for Graphpak adapter

Column nut
Programmable Temperatue Vaporizing (PTV) Inlet assembly
Installing a Capillary Column into the PTV Inlet

1. Position the column so it extends 17 mm above the end of the ferrule.
Mark the column behind the ferrule with correction fluid or a marker. Slide the nut
17 mm over the column.
Mark column here 2. Insert the column into the adapter and finger tighten the column nut. Looking through
the slot in the nut, adjust the column until the mark is correctly positioned below the
Graphpak 2M ferrule.
3. Tighten the column nut an additional 1/8 to 1/4 turn with a wrench.
Do not overtighten.

Programmable Temperature Vaporizing (PTV) Liners
Description ID (mm) Volume Part No.
(µL)
PTV liner, single baffle, glass wool, deactivated 2 180 5183-2038

PTV liner, single baffle, deactivated 2 200 5183-2036
PTV liner, multi baffled, deactivated 1.8 150 5183-2037
PTV liner, high temperature, quartz 3.4 713 5188-5313
PTV liner, high temperature, borosilicate 3.4 668 5188-5356
PTV liner, sintered glass, deactivated 1.5 112 5190-1426
Syringes for PTV Inlet

Volume Description Needle Part No.
(µL)
5 Straight, fixed 23/42/HP 9301-0892

10 Straight, fixed 23/42/HP 9301-0713
50 Straight, fixed, for large volume injections 23/42/HP 5183-0318
100 Straight, fixed, for large volume injections 23/42/HP 5183-2058

Detectors
Make sure damaging contaminants
do not compromise your GC detector’s operation.
At Agilent, we understand that sensitive GC detectors require regular maintenance and
decontamination to ensure peak performance and minimize the risk of costly downtime.
That is why we have devoted this section to…
• The most essential FID, TCD, NPD, ECD, and FPD maintenance and testing procedures.
• Strategies for specific operations, such as testing electron capture detectors
for radioactivity leaks and resolving ignition problems associated with your flame
photometric detector.
• Techniques for maintaining your detector’s high level of selectivity and sensitivity.

Flame Ionization Detector (FID)
The FID requires routine maintenance to ensure optimum performance. Maintenance
requirements are application dependent, but Agilent recommends periodically cleaning
or replacing the following items:
FID Routine Maintenance

Item Comments
FID Jet A plugged jet results in longer retention

times as the column exit/detector pressure
increases. Once the jet becomes completely
plugged, it is difficult to light or sustain
a flame.
Igniter Glow-Plug Replace if corroded or burned out.
FID Collector/Insulators Contamination can contribute to detector
noise or loss of sensitivity.
Column Adapter/Seals Leaks at column fittings can result in difficulty
For Adaptable FID only lighting the FID or sustaining a flame
after injection.
Typical FID Problems

Condensation
Since the FID combustion process results in water formation, the detector temperature
must be kept above 300°C to prevent condensation. At detector block temperatures
below 300°C, the castle assembly drops below 100°C, resulting in condensation
and possible rusting. Such condensation, especially when combined with chlorinated
or fluorinated solvents or samples, causes corrosion, with resulting increase in detector
noise and loss of sensitivity.

Detectors
Flame Ignition
If the flame goes out or will not light:
• Measure the hydrogen/air and makeup flow rates – Low H2 or makeup flows indicated
a plugged jet, or a leak at the column fitting. Measure each gas flow independently.
• Confirm that the igniter is glowing during the FID ignition sequence.
• Check for partially or completely plugged jet – Formation of silica or carbon deposits
at the tip of the jet can cause plugging. Incorrect capillary column installation can also
FID collector assembly
cause plugging.
It is best to replace a plugged jet, rather than try to clean it.

• Check that the capillary column is not installed all the way to the jet tip
(withdraw 1-2 mm).
• Check that the correct type of jet is installed for the column you are using.
Tips & Tools • Check for leaking column or adapter fitting at the base of the FID.
For optimal sensitivity, use • Check the lit offset value to make sure it is not too low or too high. Adjust the value
Agilent gas purifiers to ensure (normally set to 2.0 pA).
cleanliness of your GC gases.
Injecting large volumes of aromatic solvent or water can cause the flame to go out.
See page 4.
Switch to a non-aromatic solvent or reduce injection volume.
Increased FID Noise or Loss in Sensitivity

FID noise is affected by:
• The cleanliness of the GC gases and gas delivery system – Ensure that the carrier/H2
and air purity is ≥ 99.9995%. Check traps and filters in the gas supply lines. The FID
background signal should be ≤ 20 pA when the flame is lit and stablized.
• Dirty collector/PTFE insulators – Clean or replace.
• Dirty jet – An incorrect flame pattern can increase noise or affect sensitivity.

Installing a Capillary Column in the FID
1. Gather the required supplies and tools.
2. Load the GC maintenance method and wait for the GC to become ready.
3. If using the adaptable detector, verify that the adapter is installed.
4. Place a septum, capillary column nut, and ferrule on the column.
5. Score the column using a glass scribing tool. The score must be square to ensure a
clean break.
What you need: 6. Break off the column end by supporting it against the column cutter opposite the
scribe. Inspect the end with a magnifying loupe to make certain there are no burrs or
• Column jagged edges.
• Ferrule(s) 7. Wipe the column walls with a tissue dampened with isopropanol to remove fingerprints
• Column nut and dust.
• Column cutter 8. Install the capillary column.
• 1/4 in. open end wrench If the column ID is greater than 0.1 mm:
• Septum
a. Gently insert the column into the detector until it bottoms; do not attempt
• Isopropanol to force it further.
• Lab tissue b. Finger-tighten the column nut, then withdraw the column about 1 mm.
• Lint-free gloves Tighten the nut an additional 1/4 turn with a wrench.
If the column ID is 0.1 mm or less, position the column so it extends above
the ferrule by 48 mm (capillary optimized fitting) or 68 mm (adaptable fitting).
Slide the septum up to hold the column nut and ferrule at this fixed position.
Warnings & Caution c. Insert the column into the detector. Slide the nut and ferrule up the column
to the detector base. Finger-tighten the column nut until it grips the column.
• The oven and/or inlet may be hot
enough to cause burns. If either is hot, d. Adjust the column (not the septum) position so that the septum is even with the
wear heat-resistant gloves to protect bottom of the column nut. Tighten the nut an additional 1/4 turn with a wrench.
your hands.
• Wear safety glasses to protect your
eyes from flying particles while Positioning the column
handling, cutting or installing glass Capillary optimized fitting Adaptable fitting
or fused silica capillary columns.
Use care in handling these columns
to prevent puncture wounds.
• Wear clean, lint-free gloves to prevent
contamination of parts with dirt and
skin oils.
48 mm
68 mm

Detectors
FID Jet Identification and Selection

FID Jets
Description Jet Tip ID Length (mm) Part No.
Before ordering parts for FID maintenance,
Jets for capillary optimized fittings
determine which type of FID is installed
on your GC. The FID is available in Capillary 0.29 mm (0.011 in.) 48 G1531-80560
two versions: Capillary, high temperature 0.47 mm (0.018 in.) 48 G1531-80620
• Dedicated, Capillary Optimized: Use with simulated distillation
for capillary columns only
Jets for adaptable fittings
• Adaptable: for packed or
capillary columns Capillary 0.29 mm (0.011 in.) 61.5 19244-80560
Capillary, high temperature 0.47 mm (0.018 in.) 61.5 19244-80620
To determine the type of FID installed on Use with simulated distillation
your GC, open the oven door and examine
the fitting at the base of the detector. Packed 0.46 mm (0.018 in.) 63.5 18710-20119
Compare to the following diagram. Packed, wide-bore 0.76 mm (0.030 in.) 63.5 18789-80070
Use with high-bleed applications
Hint: Adaptable jets are longer than
dedicated capillary jets.
Adaptable fitting Capillary optimized fitting
Detector fitting
Adapter

Jet Cleaning Procedure
Use Agilent cleaning kit, part number 9301-0985
1. Run a cleaning wire through the top of the jet. Run it back and forth a few times until
it runs smoothly. Be careful not to scratch the jet. (Do not force too large a wire or
probe into the jet opening or the opening will become distorted. A loss of sensitivity,
poor peak shape, and/or lighting difficulties may result if the opening is deformed.)
2. Fill an ultrasonic cleaning bath with aqueous detergent, and place the jet in the bath.
Sonicate for five minutes.
3. Use a jet reamer to clean the inside of the jet.
4. Sonicate again for five minutes.
Note: from this point on, handle the parts only with forceps!
5. Remove the jet from the bath and rinse it thoroughly, first with hot tap water and then
with a small amount of GC-grade methanol.
6. Blow the jet dry with a burst of compressed air or nitrogen, and then place the jet
on a paper towel and allow to air dry.
FID cleaning kit, 9301-0985

Detectors
Flame Ionization Detector (FID) Supplies

PTFE chimney (optional) 19231-21050

1 Collector nut 19231-20940
2 Spring washer 10/pk 5181-3311
3 Ignitor castle 19231-20910
Hastelloy ignitor castle (optional) 19231-21060
4 Ignitor glow plug assembly 19231-60680
5 Collector insulator G1531-20700
6 Collector body G1531-20690
Hastelloy Collector Body G1531-21090
7 FID collector assembly G1531-60690
FID collector cleaning brush 2/pk 8710-1346
Collector Housing G1531-20740
Flame Ionization Detector (FID) assembly FID retainer nut wrench 19301-00150
5880, 5890, 6890
1/4 in. nut driver for FID jet, drilled shaft 8710-1561
8 FID ignitor cable for 6890/6850 only G1531-60680
FID ignitor cable, 7890A only G3431-60680
FID performance evaluation sample kit 18710-60170
This sample is used for the HP 5880, 5890 and 6890 with a FID
or TCD. Solution of 0.033% C14, C15, and C16 normal alkanes
in hexane. Three 0.5 mL ampoules.

Flame Ionization Detector (FID) Supplies
FID MDL test sample for 7890 only 5188-5372

3 x 0.5 mL ampoules. Contains 2.36 mg/L n-Tridecane,
2.36 mg/L n-Tetradecane, 23.6 mg/mL n-Penta-decane,
23.6 mg/mL n-Hexadecane in iso-octane
O-rings 12/pk 5080-4978
FID/NPD adapter for capillary column 19244-80610
FID/NPD 1/8 in. packed column 19231-80520
1/4 in. nut driver for FID jet, drilled shaft 8710-1561
FID collector cleaning brush 2/pk 8710-1346
FID Supplies Kit, Includes: 5182-3450
Test samples
Jet, packed standard 0.018 in. ID tip 3 each 18710-20119
FID and TCD Sample 2 each 18710-60170
Ignitor glow plug assembly 2 each 19231-60680
Jet, 0.011 in. ID tip, capillary adaptable 3 each 19244-80560
FID flow measuring insert 2 each 19301-60660
Cleaning wires for 0.03 in. ID jet 5/pk 5180-4150
Cleaning wire for 0.018 in. ID/530 µm jet 5/pk 5180-4152
Wire, jet cleaning 5 each 19301-20720
Capillary inlet cleaning wires 5/pk 5180-4153
FID cleaning kit 9301-0985

Detectors
Electron Capture Detector (ECD)

Liner Selection
The only assembly that requires routine maintenance is the glass liner in the makeup gas
assembly, especially for the µECD. All sample passes through the indent in the mixing liner
of the µECD. The mixing liner should be replaced if there is a significant loss of sensitivity
or any time the column is removed/reinstalled in the detector.
• Gigabore Liner (p/n 19233-20625): for original ECD design (5890 and 6890), brown,
polyamide coating
• Mixing Liner (p/n G2397-20540): for µECD, clear glass with indent
Makeup Gas Adapter Maintenance/Installation Procedure

1. Remove the Makeup Gas Adapter from the ECD fitting with a 9/16 in. wrench.
Be careful not to stress the 1/16 in. stainless steel gas supply tube.
2. Unscrew the end cap of the Make Gas Adapter and ultrasonically clean in solvent.
3. Remove the old liner.
4. Clean the Makeup Gas Adapter body with solvent in a Nalgene squeeze bottle.
5. Wipe the Makeup Gas Adapter with a clean laboratory wipe.
6. Install the replacement liner.
7. Reinstall the tip of the Makeup Gas Adapter and tighten securely.
8. Reinstall the Makeup Gas Adapter. Make sure it is fully inserted into the detector.
9. Reinstall the column.
Agilent's plasma treated inlet
O-rings are pre-cleaned using 10. Reinstall the insulation cup.
a two-step proprietary process
to minimize contaminants
common in flurocarbon
O-rings. Order part number
5188-5365 for standard
split/splitless inlets and
5188-5366 for the Flip Top.

Thermal Cleaning
If your baseline is noisy or the output value is abnormally high (> 1000 Hz), and you have
determined that these problems are not being caused by leaks in the GC system, you may
have contamination in the detector from column bleed and sample residues. To remove
contamination, you should perform a thermal cleaning (bakeout) of the detector. Bakeout
the detector at 20-30 degrees higher than normal operating temperature (375°C Max),
with 50-100 mL/min of makeup gas flow.
Warning: Detector disassembly and/or cleaning procedures other than thermal should
be performed only by personnel trained and licensed appropriately to handle radioactive
materials. Trace amounts of radioactive 63Ni may be removed during other procedures,
causing possible hazardous exposure to b and x-radiation.
Radioactivity Leak Test

Electron capture detectors must be tested for radioactive leakage at least every six
months. Records of tests and results must be maintained for possile inspection by the
Nuclear Regulatory Commission and/or the responsible local agency. More frequent tests
may be conducted when necessary.
The procedure used is a "wipe test." A wipe test kit is supplied with each new detector.
Refer to the information card supplied in the Wipe Test Kit for instructions on performing
the test.
Gas Purity
For successful EC detection, it's important that the carrier and purge gases are very clean
and dry (99.9995% minimum purity). Moisture, oxygen, or other contaminants can result
in higher detector response but usually at the expense of both sensitivity and linear range.
Always precondition the column before connection to the detector.
ECD Wipe Test

A wipe test kit (P/N 18713-60050) is supplied with each new ECD. The kit includes an
information card with instructions for performing the test. Records of tests and results
must be maintained for possible inspection by the Nuclear Regulatory Commission (NRC)
and/or responsible state agency.

Detectors
Electron Capture Detector (ECD) Supplies

Item Description Part No.
1 Standard ECD makeup gas adapter* G1533-80565

Micro ECD makeup gas adapter G2397-80520
Micro ECD mixing liner, also compatible with standard ECD design G2397-20540
ECD makeup gas adapter, 7890A only G3433-67565
2, 3 Insulating cup 19234-60720
Gigabore liner for standard ECD, polyamide coating, not compatible 19233-20625
with micro ECD
ECD adapter end cap 19233-20755
Ferrule, 1/4 in. Vespel 5080-8774
1/4 in. nut, brass 5180-4105
Electron Capture Detector Sample 18713-60040
1
This sample is used for the HP 5880, 5890 and 6890 with an ECD.
Solution of 33 pg/mL (0.033 ppm) (w/v) each of lindane and aldrin in
isooctane. Three 0.5 mL ampoules.
Micro ECD wipe test kit 18713-60050
2
*Includes one each of P/N 19233-20625 and 19233-20755
Electron Capture Detector (ECD) assembly
ECD Warnings
Although beta particles at this energy level have little penetrating power – the surface layer of the skin or a few sheets
of paper will stop most of them – they may be hazardous if the isotope is ingested or inhaled. For this reason the cell
must be handled with care. Radioactive leak tests must be performed at the required intervals, the inlet and outlet
fittings must be capped when the detector is not in use, corrosive chemicals must not be introduced into the detector,
and the effluent from the detector must be vented outside the laboratory environment.

Thermal Conductivity Detector (TCD)
The TCD compares the thermal conductivities of two gas flows – pure carrier gas
(also called the reference gas) and carrier gas plus sample components (also called
column effluent).
Filament Maintenance
The primary maintenance for a TCD involves the filament. Most procedures involve
improving filament life or keeping the filament from becoming damaged or contaminated.
To avoid filament damage and contamination:
Tips & Tools • Check for leaks.
After maintenance to the gas • Use gas purifiers to remove oxygen.
supply, inlet, or detector, check • Avoid chemically-active sample components, such as acids
for leaks with Agilent's Leak and halogenated compounds.
Detector (part number
• Turn off the filament when not in use.
G3388A). See page 18.
Increasing Filament Lifetime

Use the following startup process to increase filament lifetime:
Purge the detector with carrier and makeup gas for 10-15 minutes before turning on the
filaments. This prevents oxidation of the filaments due to the presence of oxygen that has
diffused into the cell under no flow conditions.
Cell Contamination
Cell contamination is a problem when a lower detector temperature is used to improve
sensitivity. If the cell becomes contaminated, a solvent flush of the detector may help to
remove the condensed material.

Detectors
Solvent Flush
1. Cool the cell to room temperature and remove the column.
2. Place a septum in a nut or fitting assembly that fits onto the detector entrance
(7 mm septum in a 1/8 in. nut).
3. Place the nut or assembly on the detector fitting and tigthen. Verify the presence
of makeup gas flow.
4. Inject 20-100 µL volumes of toluene or benzene into the detector through the septum.
Inject a total volume of at least 1 mL of solvent. Do not inject halogenated solvents
such as methylene chloride and chloroform into the detector.
5. After the final injection, allow makeup gas to flow for 10 minutes or more. Slowly raise
the temperature of the cell to 20-30°C above the normal operating temperature.
6. After 30 minutes, decrease the temperature to the normal value and install the column
as usual.
Thermal Cleaning
The TCD can become contaminated with deposits from such things as column bleed
or dirty samples. A wandering baseline, increased noise level, or changes in response
on a checkout chromatogram all indicate contamination. Thermal cleaning, or bakeout
(heating the detector block to evaporate the contaminant), should be performed only after
you have confirmed that the carrier gas and the flow system components are leak free
and contaminant free.
Watch out for decreased sensitivity caused by samples that react with the filament,
originating from oxygen-contaminated carrier gas, leaks in plumbing, or column bleeding.
Samples with active components, such as acids and halogenated compounds can
chemically attack the filament as well. Also, sample condensation will contaminate
the detector cell if the temperature is too low.
Some types of contaminants can be removed by temperature bakeout.

Installing a Capillary Column in the TCD
2. Assemble the ferrules and 1/8 in. brass Swagelok nut on the column.
3. Score the column using a glass scribing tool. The score must be square to ensure
a clean break.
4. Break off the column end by supporting it against the column cutter opposite the scribe.
Inspect the end with a magnifying loupe to make certain that there are no burrs or
jagged edges.
What you need:
5. Wipe the column walls with a tissue dampened with isopropanol to remove fingerprints
• Front ferrule and dust.
• Back ferrule 6. Insert the column into the detector until it bottoms.
• Column nut 7. Slide the column nut and ferrules up the column to the detector and finger tighten the nut.
• Column cutter 8. Pull out 1 mm of column. Tighten the nut an additional 1/4 turn with a wrench or until
• 7/16 in. wrench the column does not move.
• Lab tissue
• Lint-free gloves
Detector fitting
Warnings & Caution

Front ferrule
enough to cause burns. If either is hot,
wear heat-resistant gloves to protect
Back ferrule
your hands.
eyes from flying particles while Column nut 1/8-inch brass
handling, cutting or installing glass or
fused silica capillary columns. Use
care in handling these columns to Column
prevent puncture wounds.
contamination of parts with dirt and TCD Ferrules
skin oils.
Column ID (mm) Back Ferrules Front Ferrules,
10/pk
0.53 5182-3477 5182-9673

0.32 5182-3477 5182-9676
0.25 / 0.2 / 0.1 5182-3477 5182-9677
No hole 5182-3477 5182-9679
TCD Back Ferrule for 1/8in detector fitting 10/pk 5180-4103

Detectors
Determining the TCD Electronic Pressure Control (EPC)

If you have a 6890A or 6890A Plus GC, you may have an older design EPC Flow manifold
for the TCD. The older design requires removal of sheet metal panels to attached the TCD
reference flow gas supply inside the GC. The new "Minifold" design allows TCD reference
gas to be connected directly to the back of the GC. Replacement TCD filament block
assemblies have different part numbers depending on the EPC design type.
Once you have determined the type of EPC module, decide whether to order a passivated
filament block assembly. The passivated assembly is recommended for fatty acid analysis
or reactive/acidic samples.
TCD Filament Block Assemblies

Instrument Passivated Applications Specifications EPC Design Part No.
7890A Yes Standard TCD Analysis Filament Block Only Original G3432-67685
Gases/Hydrocarbons Must reuse heater/sensor
6890 No Standard TCD Analysis Filament Block Only Original G1532-60675
6890 No Standard TCD Analysis Filament Block Only Minifold G1532-60685
6890 Yes Recommended for Fatty Filament Block Only Original G1532-60690
Acid Analysis Must reuse heater/sensor
6890/6850 Yes Recommended for Fatty Filament Block Only Minifold G1532-60695
Acid Analysis Must reuse heater/sensor
6890/6850 No Complete Detector Assembly Minifold G2630-61230
Includes detector palette
and heater/sensor assembly

Thermal Conductivity Detector (TCD) Supplies
For 1/8 in. SS Packed Column Installation

1 Vespel/graphite ferrule, 1/8 in. 10/pk 0100-1332
2 1/8 in. nut, brass 10/pk 5180-4103
For 1/4 in. SS Packed Column Installation

4 1/8 in. nut, brass 10/pk 5180-4103
5 1/4 in. Packed Column Adapter G1532-20710
6 Ferrule, 1/4 in. Vespel 10/pk 5080-8774
7 1/4 in. nut, brass 10/pk 5180-4105
For Capillary Column Installation (Standard)

TCD Capillary Column Adapter G1532-80540
1/8 in. SS packed column
9 1/8 in. nut, brass 10/pk 5180-4103
6850 column nut 2/pk 5183-4732
530 µm, 1.0 mm ID graphite ferrule 10/pk 5080-8773
320 µm, 0.5 mm ID graphite ferrule 10/pk 5080-8853
FID and TCD Sample 18710-60170
1/4 in. SS packed column
Standard design

Detectors
Flame Photometric Detector (FPD)

In 2005, Agilent released an improved FPD with minimum detectable levels (MDL)
of 3.6 pg/sec for sulfur and 60 fg/sec for phosphorus. This is more than a 5x
improvement for sulfur. The updated design is based on a one-piece, deactivated
transferline jet assembly and improved optics. Upgrade kits are available.
Operation
The FPD uses three gases: air and hydrogen to support the flame, and nitrogen makeup
for capillary columns. The flow rates are critical for optimizing performance. Using
nitrogen as a makeup gas is essential to obtaining low MDLs. Do not use helium for the
makeup gas.
Recommended Gas Flows

Detector Gas Flows Phosphorous Mode Sulfur Mode
Air 75 mL/min 50 mL/min

Hydrogen 100 mL/min 60 mL/min
Nitrogen makeup 60 mL/min 60 mL/min

Maintenance
Managing gas purity; contamination from column bleed, sample residue, and corrosion;
and air leaks can help keep your FPD at peak performance.
Gas purity
Sulfur contamination is a common problem and causes noise and/or a higher baseline
offset in the FPD. To minimize sulfur contamination and achieve the lowest MDLs,
use at least 99.9995% pure gases, clean tubing, and regulators with metal diagrams.
To protect your FPD over its lifetime, Agilent recommends gas generators or supply gas
filters designed to remove sulfur.
Contamination
The FPD is susceptible to build up of residue on the surfaces of the igniter coil, jet,
Glow plug
combustion chamber, and chamber window. The residue increases detector offset
and reduces the signal-to-noise ratio. The sample or column bleed usually cause the
residue. After a period of time, you may need to rebuild the detector and replace the
transfer line. Do not clean the transfer line, jet, or other parts with brushes or solvents.
To increase the time between servicing, remove the column, cap off the detector,
and run it at 250°C with the flame to bake off some of the residue. Replacing the igniter
may reduce baseline output. If these tactics are not effective, rebuild the detector.
If your solvent or sample is corrosive, it can erode the aluminum vent tube. Agilent
recommends using alternative stainless steel vent tubes for these applications.
Air Leaks
The original FPD design has three more internal seals than the new design. Temperature
For more information about gas cycling of the detector causes the ferrules to shrink and leaks to occur. The most common
purity and selection, including the leaks are around the fused silica transfer line. To eliminate these leaks, remove the
Renewable Gas Purification System, detector from the GC and tighten the transfer line fittings.
see pages 3-12. For both the original and new FPD, leaks can develop at the column nut or capillary
column adapter, the gang fitting at the EPC module, around the vent tube, or around
the igniter glow plug. If you are replacing fittings or O-rings, always use conditioned,
graphitized-vespel ferrules and Agilent's low sulfur O-rings. Make sure ferrules are
the correct size for your column.

Detectors
Flame Ignition Problems

You can tell if your FPD is lit by checking the detector "Output" and "Flame" on the
display. The detector senses that the flame is on by comparing the output with the offset.
An optimized FPD normally runs with an output in the range of 30 to 80 with the offset
set point at 2.0. If the flame is out and the electrometer is on, the output usually displays
less than 1.
Most FPD ignition problems are caused by incorrect gas flows, incorrect column
installation, or a dirty or defective igniter. To troubleshoot:
1. Make sure the FPD is at operating temperature before trying to light.

2. Remove the rubber drip tube while lighting the FPD.
3. Increase air supply pressure by 10-20 psi.
4. Check the detector gas flows to see if they match the Recommended Gas Flows table.
5. Check the detector output when you turn the flame on. The photomultiplier will see
the glow of the igniter and jump to about 68000 pA.
6. Remove the column and check the tip for residue or burnt polymide coating. If it
appears damaged, cut off the damaged portion and reinstall to the proper height.
7. Remove the igniter glow plug. If dirty or damaged, replace it.
Less common problems include leaks, quenching, and condensation:

• Large air leaks at the inlet or detector can reduce the percentage of the hydrogen-air
mixture at the detector and cause ignition problems.
Tips & Tools • Large injections of certain samples can cause flameouts or quenching that cause the
detector to attempt to relight, interrupting your analysis.
Helium is not a good makeup gas
for the FPD. You will not be able to • Condensation is a by-product of the burning of your sample. For many analyses, the
light or keep the detector lit in the liquid is collected from the vent tube. If the liquid drips back into the detector, it will
sulfur mode with helium. extinguish the flame. Agilent recommends that you wait to light the flame until the
detector is at temperature and equilibrated.
• Light leaks at the vent tube can cause a higher baseline offset. Make sure the vent tube
ferrule seals tightly against the emission block. Keep the lid closed over the detector.

Installing a Capillary Column Adapter to the FPD
3. Insert the capillary adapter into the 1/8-inch nut as shown, then thread the nut onto
the detector fitting.
4. Finger-tighten the nut, then tighten an additional 1/8 turn with a wrench.
What you need:

FPD fitting
• FPD capillary column adapter
• Column cutter
• 1/4 in. and 9/16 in. wrenches
• Metric ruler Capillary adapter
• 1/8 in. nut
1/8-inch nut
Warnings & Caution

enough to cause burns. If either is
hot, wear heat-resistant gloves to
protect your hands.
eyes from flying particles while
handling, cutting or installing glass or
fused silica capillary columns. Use
care in handling these columns to
prevent puncture wounds.
contamination of parts with dirt and
skin oils.

Detectors
Attaching a Capillary Column to the FPD

What you need:
• Column measuring tool,
p/n 19256-80640 3. Assemble a septum, column nut, and ferrule on the end of the column.
• Column cutter 4. Insert the end of the column through the column measuring tool so that the end
• 1/4 in. and 7/16 in. wrenches protrudes beyond the tool.
• Column nut 5. Tighten the column nut until it grips the column. Tighten the nut an additional
1/8 to 1/4 turn with a pair of wrenches. Snug the septum against the base of
• Ferrule the column nut.
• Capillary column
6. Use a wafer cutter at 45° to score the column.
7. Snap off the column end. The column may protrude about 1 mm beyond the end of
the tool. Inspect the end with a magnifying loupe to make certain that there are no
burrs or jagged edges.
8. Remove the column, nut, and swaged ferrule from the tool.
9. Wipe the column walls with a tissue dampened with isopropanol to remove
fingerprints and dust.
10. Verify that a capillary adapter is installed in the detector fitting.
11. Carefully thread the swaged column up into the adapter. Finger-tighten the column
nut, then use a wrench to tighten an additional 1/8 turn.
If you are using a capillary column, the tip of the column must be at least 1 mm below the
surface of the jet. When you install the column, measure the distance from the sealing
surface of the ferrule to the tip of the column. This measurement is 153 mm for the
original FPD and 145 mm for the new FPD. For the new design, Agilent recommends
using the column measuring tool, part number 19256-80640.
Score column here
Column measuring tool
Ferrule
Column nut 145 mm

FPD Ignitor and Heat Shield Assembly
1 FPD Exit Tube Assembly

Aluminum 19256-60700
Stainless Steel 19256-20705
2 Ferrule, 1/4 in. Vespel, 10/pk 5080-8774
3 Emission chamber, single
FPD single 19256-80560
FPD, dual 19256-80600
4 FPD igniter replacement kit 19256-60800
Includes items A, B, C
Tips & Tools A. O-ring, size 2-010
Track detector output. When it B. Spacer, ignitor

increases by 50%, remove the C. Glow plug
column, bake it out, replace the
5 Igniter cable assembly G1535-60600
igniter, or rebuild the detector.
6 Heat shield gasket, white 19256-80045
7 First heat shield window 19256-80030
8 Heat shield disk 19256-20580
9 Stainless steel coupling 19256-20550
10 Lock washer (4 required) 2190-0584
11 Screw, M3 x 12, T10 (4 required) 0515-1084
12 Collar 19256-20690
13 Screw, M3 x 66 mm, T10 0515-0680
FPD ignitor and heat shield assembly

Detectors
FPD Lens Assembly

1 Clamp 19256-00090
2 Screw, M3 x 25 (4 required) 0515-0683
3 Window O-ring, inner, 0.926 in. ID, orange 5061-5886
4 Convex lens 1000-1438
5 Lens housing 19256-20900
6 Flange ring 19256-00200
7 Fluorocarbon Elastomer O-ring, brown, 1.239 in. ID 5061-5890
FPD lens assembly
FPD PMT and Bracket Assemblies

Chimney back cover G1535-80520

Heater/sensor assembly G1535-60610
Transfer line support bracket 19256-00320
Bracket/support G1535-00010
Sulfur filter, 7890 and late model 6890* 1000-1437
Sulfur filter, blue, early model 6890* 19256-80000
Phosphorus filter, yellow 19256-80010
Filter spacer (used only with sulfur filter) 19256-20910
PMT housing assembly 19256-60510
Dual FPD chimney front G1535-00030
*Please contact Agilent technical support for assistance in selecting the correct sulfur filter for your
6890 FPD detector.

Nitrogen Phosphorus Detector (NPD)
Bead Maintenance
NPDs are temperamental and require frequent maintenance. Small changes in any
of a number of parameters can significantly change the performance characteristics
of an NPD. The bead requires the most maintenance. It needs to be changed frequently,
thus a spare is a necessity.
The beads have to be kept dry which limits their storage life to about six months.
When a new bead is installed, slowly raise the detector temperature and bead current.
Rapid heating can crack or break the bead especially if it has been stored under humid
conditions. It has been observed that higher hydrogen flows and bead currents decrease
bead life. If the NPD is not in use, the hydrogen flow and bead current should be reduced
or turned off to increase bead life. Make sure there is some type of gas flow in a heated
detector or when there is current to the bead.
Bead Life
To extend the life of the bead:
• Avoid polar stationary phase, if possible.
NPD bead • Use the lowest practical adjust offset or bead voltage.
• Run clean samples and keep the inlet/liner clean to minimize contamination.
• Turn off the bead when not in use.
• Keep the detector temperature high (320-335°C).
• Turn off the hydrogen flow during solvent peaks and between runs.
• If the NPD is off for an extended period of time in a high humidity environment, water
may accumulate in the detector. To evaporate this water, set the detector temperature
to 100°C and maintain it for 30 minutes. Then set the detector temperature to 150°C
and maintain it for another 30 minutes.

Detectors
Gas Flow
The hydrogen, air and makeup gas flows should be measured frequently. They can drift
over time or be changed unintentionally without knowledge of it occurring. Each gas flow
should be measured independently to obtain the most accurate values. NPDs are very
sensitive to changes in the gas flows and consistent flows are necessary to maintain
performance levels.
Measuring NPD Flows

1. Set the bead voltage to 0.0 V.
2. Cool the NPD to 100°C.
3. Remove the bead and store it carefully until re-installation.
4. Insert the NPD flowmeter adapter tool into the NPD collector.
5. Attach the flow-measuring insert to the NPD flowmeter adapter tool.
6. Place the flowmeter tubing over the flow-measuring insert to begin measuring flows.
For more information about gas

purity and selection, including the Gas Purity
Renewable Gas Purification System,
Because of its high sensitivity, the NPD requires very pure gases (99.999% or better).
see pages 3-12.
We strongly recommend that moisture and hydrocarbon traps be used on the carrier gas
and all detector gases, including the detector hydrogen, air, and makeup gases. Dirty
gases will not only give poor chromatographic performance, but will shorten the bead
life as well.

Cleaning and Replacement
The NPD requires periodic cleaning. In most cases, this only involves the collector
and the jet. Agilent provides brushes and wires that simplify the cleaning of all detector
parts. The brushes are used to dislodge particulates clinging to the metal surfaces.
A fine wire is used to clean the jet opening of particulates. Do not force too large a wire
or probe into the jet opening or the opening will become distorted. A loss of sensitivity
or poor peak shape may result if the opening is deformed. The various parts can be
ultrasonicated after cleaning with a brush. Eventually the jet needs to be replaced,
so it is strongly recommended to have spare jets on hand.
Over time, residue from the bead or sample can build up in the collector and cause
baseline problems. You should clean the collector after you have damaged the bead
two or three times.
The metal C-rings wear slightly with each assembly and disassembly. After several
assemblies and disassemblies (five or more), the rings may not seal effectively, causing
an erratic baseline. A ceramic insulator and seal kit is available. Always cool the detector
to near-ambient when changing seals and insulators.
Because there is no flame in the NPD, the jet does not collect silica and soot as does
the FID jet. Although you can clean the jet, it is ususally more practical to simply replace
dirty jets with new ones. If you do clean the jet, use the cleaning wire, taking care not
to damage the inside of the jet. You can also use a sonicator bath to clean the jet.

Detectors
Contaminants
Some chemical problems can also arise when using the NPD. Because it is a trace
detector, be careful not to contaminate the analytical system.
Glassware
Glassware must be very clean. Phosphate detergents should be avoided, so acid washing
of glassware followed by distilled water and solvent rinsing is recommended.
Solvents
Solvents should be checked for purity. Chlorinated solvents and silanizing reagents can
decrease the useful lifetime of the alkali source; excess reagent should be removed prior
to injection, if possible.
Other Contamination Sources

Phosphate-containing leak detectors, phosphoric acid-treated columns or glass wool,
polyimide-coated columns, or nitrogen-containing liquid phases can add noise to the
system and should be avoided.

NPD Jet Identification and Selection
Before ordering parts for NPD maintenance, determine which type of NPD is installed on
your GC. The NPD is available in two versions:
• Dedicated, Capillary Optimized: for capillary columns only
• Adaptable: for packed or capillary columns
Hint: Adaptable jets are longer than dedicated capillary jets.
NPD Jets
Description Jet Tip ID Length (mm) Part No.
Jets for capillary optimized fittings

Capillary with extended 0.29 mm (0.011 in.) 51.5 G1534-80580
jet (recommended)
Capillary 0.29 mm (0.011 in.) 53 G1531-80560
Capillary, high 0.47 mm (0.018 in.) 48 G1531-80620
temperature
Jets for adaptable fittings

Capillary with extended 0.29 mm (0.11 inch) 70.5 G1534-80590
jet (recommended)
Capillary 0.29 mm (0.011 in.) 61.5 19244-80560
Capillary, high 0.47 mm (0.018 in.) 61.5 19244-80620
temperature
Packed 0.46 mm (0.018 in.) 63.5 18710-20119
Adaptable fitting Capillary optimized fitting
Detector fitting
Adapter

Detectors
Nitrogen Phosphorus Detector (NPD) Supplies

2 1 Screws, M3 x 0.5 x 8 mm (Pozidriv) 0515-0655

1
2 NPD bead assembly* G1534-60570
3 NPD black ceramic bead assembly** 5183-2007
3 Lid weldment G1534-80510
9
10
11 4 Metal C-ring, top 0905-2580
4 12 5 Alumina insulator, upper G1534-40020
5
6 6 Collector funnel G1534-20530
7 Alumina insulator, lower G1534-40030
8 7
8 Metal C-ring, bottom 0905-1284
9 Screw, M4 x 07 10 mm 0515-2495
10 J-Clamp 1400-0015
11 Screw, M4 x 07 10 mm 0515-2495
13 12 NPD interconnect assembly G1534-60610
14
13 Mounting pallet G1531-40020
14 Jet, 0.011 in./0.29 mm ID tip, capillary dedicated G1531-80560
15 Jet, 0.011 in. ID tip, capillary adaptable 19244-80560
16
Jet, packed standard 0.018 in. ID tip 18710-20119
15 Base weldment, Capillary NPD for 6890/6850 only G1534-80500
17
Base weldment, Packed NPD for 6890/6850 only G1534-80540
Base weldment, Capillary NPD, 7890A G3434-67500
18
Base weldment, Packed NPD, 7890A G3434-67540
16 Lid stop G1534-20590
NPD Ceramic Insulator Kit 5182-9722
Nitrogen Phosphorus Detector (NPD) assembly Includes items 4, 5, 7, and 8
17 FID/NPD adapter for capillary column 19244-80610
18 Insulating cup 19234-60720
*This bead is more sensitive but exhibits some tailing for phosphorous compounds.
**The black bead is potentially a little less sensitive but does not exhibit peak tailing and typically
has longer lifetime.

Nitrogen Phosphorus Detector (NPD) Supplies
Ferrule, 1/4 in. Vespel, 10/pk 5080-8774

530 µm, 1.0 mm ID graphite ferrule, 10/pk 5080-8773
320 µm, 0.5 mm ID graphite ferrule, 10/pk 5080-8853
1/4 in. nut, brass, 10/pk 5180-4105
Universal column nut, 2/pk 5181-8830
Nitrogen-Phosphorus Detector Sample 18789-60060
Solution of 0.65 ppm azobenzene, 1,000 ppm octadecane, and 1.00
ppm malathion in isooctane (w/v). Three 0.5 mL ampoules.

Detectors
Nitrogen and Sulfur

Chemiluminescence Detectors
Nitrogen Chemiluminescence Detector (NCD) Supplies
Dual plasma burner accessory kit G6600-60038

Includes ferrules, fittings and quartz tube
PM Kit, dry piston pump G6600-67006
Includes dry piston seal, 6 Moleculite vacuum pump traps
and 1 set of ceramic tubes
PM Kit, DP RV5 oil pump G6600-67007
Nitrogen Chemiluminescence Detector (NCD)
Includes 6 chemical traps for Ozone destruction, 3 oil coalescer elements
and 4 (1 Qt) bottles of synthetic oil
Includes 6 Chemical traps for Ozone destruction and 2 repair kits for pump
12-month maintenance kit G6600-67009
Includes 6 quarts oil, 12 chemical traps, 4 oil filter elements,
2 sets of ceramic tubes, and 2 O-rings
Replacement oil coalescing filter G6600-80042
Oil mist filter for RV5 pump G6600-80043
Replacement odor filtration element G6600-80045
O-ring, 1.3614 in. ID G6600-80050
O-ring, 1.301 in. ID G6600-80051
Dual plasma quartz tube G6600-80063
Mobil 1 synthetic oil G6600-85001
Oil, Edwards ultragrade for RV3 and RV5 pumps G6600-85002

Sulfur Chemiluminescence Detector (SCD) Supplies

Includes dry piston seal, 6 Moleculite vacuum pump traps
and 1 set of ceramic tubes
Includes 6 Chemical traps for Ozone destruction and 2 repair kits for pump
12-month maintenance kit G6600-67009
Includes 6 quarts oil, 12 chemical traps, 4 oil filter elements, 2 sets of ceramic
tubes, and 2 O-rings
Dual plasma burner accessory kit G6600-60037
Mobil 1 synthetic oil G6600-85001
Oil mist filter for RV5 pump G6600-80043
Oil, Edwards ultragrade for RV3 and RV5 pumps G6600-85002
O-ring, 1.301 in. ID G6600-80051
Ozone destruction chemical trap G6600-85000
Sulfur Chemiluminescence test sample G2933-85001
Sulfur trap G2933-85003
For carrier H2 and air gases; one required for each cylinder of gas (3 total)

GC/MS Systems
Prevent, detect, and correct problems now and promote
a lifetime of reliability and low operating costs.
Your mass spectrometer is a sensitive, specialized device that delivers a higher level
of functionality than other GC detectors. However, it also requires more stringent
adherence to a regular maintenance schedule.
Accordingly, we have dedicated an entire section of this guide to the routine tasks
that will help you…
• Prevent contamination.
• Monitor critical functions.
• Maximize your GC/MS system’s performance.
We will also show you how to execute key diagnostic tests and choose the right parts
and supplies.

Maintaining Mass Selective Detectors
(MSD)
Your GC/MSD is highly sensitive. To continue achieving optimal results, it is critical to
maintain your system properly by performing the essential tasks within this section.
Some of the benefits of maintaining your GC/MSD include:
• Less downtime for repairs.
• Longer lifetime for your MSD system.
• Reduction in overall operating costs.
It is advisable to keep a log book of system performance, Autotune, and maintenance

operations performed. This makes it easier to identify variations from normal performance
and to take corrective action.

GC/MS Systems
Maintenance Schedule
Task Every week Every 6 months Every year As needed
Tune the MSD ]

Change injection port liners ]
Check the foreline pump oil level ]
Gas ballast the foreline pump ]
Check the calibration vial ]
Replace the foreline pump oil ]
Check the diffusion pump fluid ]
Replace the diffusion pump fluid ]
Replace the traps and filters ]
Clean the ion source ]
Change the carrier gas trap(s) and ]
purifier
Replace worn out parts ]
Lubricate seals (where appropriate) ]
Replace column ]

MSD Contamination
Contamination is usually identified by excessive background in the mass spectra. It can
come from the GC or from the MSD. The source of the contamination can sometimes be
determined by identifying the contaminants. Some contaminants are much more likely to
originate in the GC, others are likely to originate in the MSD.
Contamination Sources in the GC

• Column or septum bleed
• Dirty injection port
• Injection port liner
• Contaminated syringe
• Poor quality carrier gas
Column bleed generally appears as
• Dirty carrier gas tubing
a continuous and increased rise in
the baseline at higher column • Fingerprints
temperatures, especially at or near • Air leaks
the upper temperature limit of the • Cleaning solvents and materials
GC column. Septum bleed usually
appears as discrete peaks, and can
occur at any temperature.

GC/MS Systems
Contamination Sources in the MSD

• Air leaks
• Cleaning solvents and materials
• Fingerprints inside the manifold
• Diffusion pump fluid
• Foreline pump oil
The action required to remove contamination depends on the type and level of
contamination. Minor contamination by water or solvents can usually be removed
by allowing the system to pump (with a flow of clean carrier gas) overnight. Serious
contamination by rough pump oil, diffusion pump fluid or fingerprints is much more
difficult to remove and may require extensive cleaning.
Air Leaks
Air leaks are a problem for any instrument that requires a vacuum to operate. Leaks are
generally caused by vacuum seals that are damaged or not fastened correctly.
Leaks can occur in other places in the MSD, including the following:
• GC/MSD interface column nut
• Side/top plate O-ring (all the way around)
• Vent valve O-ring
• Calibration valve
• High vacuum gauge tube/controller fitting
• Cracked ion gauge tube (5973/5972/5971)
• Front and rear end plate O-rings
• GC/MSD interface O-ring (where the interface attaches to the vacuum manifold)
• Diffusion pump co-seal
• Baffle adapter O-ring
• Turbomolecular pump O-ring
• Vespel/Graphite ferrules, when heated

Symptoms of leaks
• Higher than normal vacuum manifold pressure or foreline pressure
• Higher than normal background
• Peaks characteristic of air (m/z 18, 28, 32, and 44 or m/z 14 and 16)
• Poor sensitivity
• Low relative abundance of m/z 502 (this varies with the tune program and MSD used)
Remedy
• Check interface nut for tightness. Replace if necessary.
• Check and leak test the GC injection port.
Replacement Parts
MS interface column nut, 05988-20066

Universal column nut, 5181-8830

GC/MS Systems
Cleaning Solvents
It is common to see cleaning solvent peaks in the mass spectra shortly after the ion source
is cleaned.
Remedy
• Dry all cleaned metal parts in the GC oven before reassembling and reinstalling them.
Refer to specific cleaning procedures in your MSD Hardware Manual or MSD
The easiest way to insure that you Maintenance and Troubleshooting Manual.
minimize background contamination
• Use a temperature above the boiling point of the solvent but below the limit
and remove damaging oxygen
of the column.
from your carrier gas system is
to use a carrier gas purifying trap
right before the gas enters your Fingerprints
GC system.
Fingerprints contain hydrocarbons that can appear in mass spectra. Hydrocarbon
contamination is characterized by a series of mass peaks 14 m/z apart. The abundances
of these peaks decrease as peak mass increases. Fingerprint contamination is usually
caused by the failure to wear lint-free, nylon gloves during ion source cleaning,
GC inlet maintenance, or from installing the column. Use special care to avoid
recontamination of parts after you clean them. This typically occurs after some
maintenance or part replacement.
Remedy
Reclean using clean, nylon gloves and proper cleaning techniques.

Diffusion Pump Fluid
If the diffusion pump fluid is allowed to operate with no column (carrier gas) flow into the
vacuum system, vapor from the diffusion pump fluid can drift up into the vacuum
manifold. A more serious problem is when fluid is back streamed into the vacuum
manifold by sudden or improper venting of the vacuum system. If a diffusion pump has
back streamed, a prominent peak will often be seen at m/z 446 and the spectral baseline
will exhibit increased background noise.
Remedy
If m/z 446 appears, please call Agilent for assistance.
Foreline Pump Oil

Foreline pump oil contamination is characterized by peaks spaced 14 amu apart
(hydrocarbons). Contamination with foreline pump oil is less common than contamination
with diffusion pump fluid.
Remedy
Call Agilent for assistance.
A crude sign of a "leak-free" MS
system is when the ion ratio
of m/z 28 (nitrogen) over m/z 32
(oxygen) is approximately two
or greater.

GC/MS Systems
MSD Contamination Identification

The following table lists some of the more common contaminants, the ion characteristics
of those contaminants, and the likely sources of those contaminants.
Common Contaminants
Ions (m/z) Compound Possible Source
13, 14, 15, 16 Methane CI gas

Even preconditioned ferrules
18, 28, 32, 44 or 14, 16 H20, N2, O2, CO2, CO2 or N, Residual air and water, air leaks,
can shrink slightly at very high
O outgassing from Vespel ferrules
temperatures, so if leak problems
persist upon a new column 31, 51, 69, 100, 119, 131, PFTBA and related ions PFTBA (tuning compound)
installation, check this fitting first. 169, 181, 214, 219, 264,
376, 414, 426, 464, 502,
576, 614
31 Methanol Cleaning solvent
43, 58 Acetone Cleaning solvent
78 Benzene Cleaning solvent
91, 92 Toluene or xylene Cleaning solvent
105, 106 Xylene Cleaning solvent
151, 153 Trichloroethane Cleaning solvent
69 Foreline pump fluid or PFTBA Foreline pump oil vapor or
calibration valve leak
73, 147, 207, 221, 281, 295, Dimethylpolysiloxane Septum bleed or methyl silicone
355, 429 column coating
77, 94, 115, 141, 168, 170, Diffusion pump fluid Diffusion pump fluid and related
262, 354, 446 ions
149 Plasticizer (phthalates) Vacuum seals (O-rings) damaged
by high temperatures, use of
vinyl or plastic gloves
Peaks spaced 14 amu apart Hydrocarbons Fingerprints, foreline pump oil

Mass Spectrometer Symptoms
Mass spectrometer symptoms can typically be classified as either affecting system
sensitivity or affecting the repeatability of a measurement. Most symptoms can be
corrected by following the suggested corrective actions.

Symptoms Remedy
Sensitivity
Wrong retention time Check GC, method, application and carrier gas velocity.
Low signal Check GC, tune vacuum system.
Leaking injection port Clean the injection port.
Replace the injection port liner and septa.
Air leak Check and tighten interface nut, leak test GC
injection port.
Peak widths Do Autotune, check flow rate and temperature stability.
Interfering peaks Check time parameters, coeluting peaks, column type.
Excessive background Do Autotune and compare to background specifications.
Check time parameters.
Incorrect mass assignment Retune.
Abnormal spectra – excessive Check for contamination.
background contamination
Incorrect tuning Check tune file, retune, check sample.
Repeller voltage is too low Raise voltage to test for response.
Dirty ion source Clean source.

GC/MS Systems

Symptoms Remedy
Repeatability
Dirty syringe needle Clean or replace the syringe.
Wrong syringe needle Replace syringe and septa.
Leaking injection port Perform injection port maintenance.
Replace the injection port liner, septa and liner O-ring.
Injection is too large Check method and injection volume, split ratio and/or
5975 MSD
splitless purge time.
Loose column connections Tighten column nuts on injection port or transfer line.
Replace column nuts and ferrule.
Variations in pressure, column flow Ensure the MSD is located in an environment where
and temperature the temperature is stable.
Keep MSD out of drafts and direct sunlight.
Check that the carrier gas is steady and well regulated.
Service the foreline pump and/or diffusion pump.
Dirty ion source Clean source.
Loose connections in the analyzer Check internal and external analyzer wiring conections,
make sure all are secure.
Ground loops Check main electrical lines.

Cleaning and Maintenance Supplies
One Year Maintenance Kit (for diffusion pump systems) 5183-2096

Includes Big Universal Trap for He (1/8 in.), abrasive sheets (5/pk), lint-free
cloths (15/pk), cotton swabs (100/pk), SantoVac Ultra, 18.5 mL (2 each),
rough pump oil (1 liter), filament assembly, Octafluoronapthalene (OFN)
Nylon gloves, lint-free, large, 1 pair 8650-0030
Nylon gloves, lint-free, small, 1 pair 8650-0029
Lint-free industrial wipes, 100% cotton, 9 x 9 in., 300/pk 9310-4828
Ion source cleaning kit 5181-8863
Includes lint-free cloths (15/pk), abrasive sheets (5/pk), cotton swabs (100/pk),
lint-free nylon gloves, Alumina powder, abrasive
Cloths, lint free, 15/pk 05980-60051
Cotton swabs, 100/pk 5080-5400
Abrasive sheets, aluminum oxide green lapping paper, 600 mesh, 5/pk 5061-5896
Alumina powder, abrasive, 1 kg 8660-0791
PFTBA sample, certified, 10 g 8500-0656
Replacement glass bulb for PFTBA and PFDTD test sample, 5975 G3170-80002
Replacement glass vial for PFTBA and PFDTD test sample 05980-20018
Activated alumina, absorbent pellets for Edwards rough pump traps, 8500-1233
non-LC/MS, 1 lb can
MSD Tool Kit, 5975/5973 G1099-60566
Includes source hold tool, lint-free cloth, cotton swabs, lint-free nylon gloves,
abrasive sheets, wrenches and driving tools
MSD Tool Kit, 5972/5971 05971-60561
Includes small cleaning rod, large cleaning rod, source hold tool, cotton swabs,
lint-free nylon gloves, abrasive sheets, wrenches and driving tools

GC/MS Systems
Cleaning and Maintenance Supplies

Tools
Screwdriver, 3 in. Pozidriv shaft No. 1 pt, fits no. 2-4 screws 8710-0899
Screwdriver, 4 in. Pozidriv shaft No. 2 pt, Fits no. 5-10 screws 8710-0900
Open end wrench, 1/4 and 5/16 in. 8710-0510
MS Interface Column Installation Tool G1099-20030
Hex nut driver, 5.5 mm 8710-1220
Screwdriver, Torx T20 8710-1615
Column installation tool, G1099-20030 Screwdriver, Torx T15 8710-1622

Screwdriver, Torx T10 5182-3466
Ferrules
0.4 mm Vespel Graphite ferrule for 200/250 µm columns, 10/pk 5062-3508
0.5 mm Vespel Graphite ferrule for 320 µm columns, 10/pk 5062-3506
250 µm Vespel/Graphite ferrule, 10/pk 5181-3323
SilTite metal ferrules for 1/16 in. OD tubing, 10/pk 5184-3571
SilTite Metal Ferrules, 1/16 in. x 0.4 mm ID, 10/pk 5184-3569
SilTite Metal Ferrules, 1/16 in. x 0.5 mm ID, 10/pk 5184-3570
Vespel/Graphite ferrules, 5181-3323 Includes 2 column nuts
MS Interface Supplies

Ion Source
The ion source operates by electron ionization (EI) or chemical ionization (CI). The sample
enters the ion source from the GC/MSD interface. Electrons emitted by a filament enter
the ionization chamber, guided by a magnetic field. The high-energy electrons interact
with the sample molecules, ionizing and fragmenting them. The positive voltage on the
repeller pushes the positive ions into the lens stack, where they pass through several
electrostatic lenses. These lenses concentrate the ions into a tight beam, which is directed
into the mass filter.
Maintaining the Ion Source

Cleaning procedures for MSDs vary. Refer to your Troubleshooting and Maintenance
manual for specific ion source cleaning procedures.
Common Measures of Instrument Performance

• Abundance of certain ions (e.g., percentage of the 502 ion from the Autotune report).
• Shape of lens ramps and the chosen voltages, especially Repeller Ramp.
• Sensitivity obtainable for a given analysis.
• Ability to tune to a given reference compound (e.g., DFTPP).

GC/MS Systems
Preparing to Clean
Prior to cleaning, the mass spectrometer must be vented and the ion source must be
removed. Before venting the system, the following conditions must be met:
• Heated zones are less than 100°C.
• The diffusion pump is off and cool.
• The turbo pump is off and not spinning.
• The rough pump is off.
Always allow the automatic venting routine to run its full course. Improper venting may
cause diffusion pump fluid to be deposited into the analyzer (backstreaming). It can also
Electron Impact (EI) Ion Source
reduce the life of the multiplier or other sensitive MS parts.
MSD Flowrates (mL/min)

Min Max Diff Pump Max Turbo Pump Tuning Max
5975 0.1 2.0 4.0 2.0

5973 0.1 2.0 4.0 2.0
5972 0.1 2.0 N/A 2.0
5971 0.1 1.5 N/A 1.0
GCD 0.1 1.0 N/A 1.0

Electron Impact (EI) Ion Source
The recommended cleaning material for the EI ion source is abrasive powder, aluminum
oxide powder.
Abrasively clean the surfaces that contact the sample or ion beam. Use an abrasive slurry
of alumina powder and reagent-grade methanol on a cotton swab. Use enough force to
remove all discolorations. Polishing the parts is not necessary; small scratches will not
harm performance. Also abrasively clean the discolorations where electrons from the
filaments enter the source body.
Warnings & Caution
5975/5973 MSD Electron Impact Ion Source Parts (EI)
Important: Do not abrasively or
ultrasonically clean the insulators. Item Description Part No. Inert
Part No.
Do not immerse filaments or lens
insulators in solvent. If insulators 1 Ion source body G1099-20130 G2589-20043
are dirty, clean them with a cotton 2 Drawout plate, 3 mm 05971-20134 G2589-20100
swab dampened with reagent-
3 Drawout cylinder G1072-20008 G1072-20008
grade methanol. If that does not
clean the insulators, replace them. 4 Lens insulator G3170-20530 G3170-20530
5 Ion focus lens 05971-20143 05971-20143
Take care to avoid contaminating
cleaned and dried parts. Put on 6 Entrance lens G3170-20126 G3170-20126
new, clean gloves before handling 7 Cap screw, gold plated G1999-20021 G1999-20021
the parts. Do not set the cleaned
parts on a dirty surface. Set them 8 High temperature filament G2590-60053 G2590-60053
only on clean, lint-free cloths. 9 Transfer line socket G1099-20136 G1099-20136
10 Repeller insulator G1099-20133 G1099-20133
11 Repeller G1099-20132 G2589-20044
6
9
5
4
10
3 11
2
1 7
8
5975/5973 MSD Electron Impact (EI) ion source assembly

GC/MS Systems
5972/5971/GCD MSD Ion Source Parts (EI)

Entrance lens 05971-20126

Lens insulator, 597X MSD G3170-20530
Ion focus lens 05971-20143
Electron Impact (EI) Ion Source Drawout cylinder G1072-20008
Drawout plate, 3 mm 05971-20134
Set screw 0515-1446
Repeller assembly 05971-60170
Screw for filament on the source 0515-1046
Transfer line tip, gold plated, 5972/5971 05971-20305
Tips & Tools

It is good practice to replace scratched lenses and other ion
source parts. Scratched source parts lead to poor performance.

Chemical Ionization (CI) Ion Source
Because the CI ion source operates at much higher pressures than the EI ion source, it
will probably require more frequent cleaning than the EI ion source.
The source should be cleaned whenever there are performance anomalies that are
associated with a dirty ion source. Let analytical performance be your guide.
When cleaning the CI ion source, concentrate on the CI repeller, ion source body, and
draw out plate. Be sure to clean the 0.5 mm diameter holes in the ion source body and
draw out plate.
Cleaning the ion source is very similar to cleaning the EI ion source. Use the same EI
cleaning procedure with the following exceptions:
• The CI ion source may not look dirty but deposits left by chemical ionization are very
difficult to remove. Clean the CI ion source thoroughly.
Tips & Tools • Use a round wooden toothpick to gently clean out the electron entrance hole in the
source body and the ion exit hole in the draw out plate.
Visual appearance is not an • Do not use halogenated solvents. Use hexane for the final rinse.
accurate guide to cleanliness
of the CI ion source. The CI ion
source can show little or no
discoloration yet still need cleaning.

GC/MS Systems
5975/5973 MSD Chemical Ionization Ion Source Parts (CI)

1 Source body G1999-20430

2 Draw out plate G1999-20446
3 Draw out cylinder G1999-20444
4 Lens insulator G3170-20540
5 Ion focus lens G1999-20443
6 Entrance lens G3170-20126
7 Repeller insulator G1999-20433
8 Repeller G1999-20432
9 High temperature filament G1099-80053
10 Cap screw, gold plated G1099-20021
11 Interface tip seal/spring G3170-60412
6
11
5
4
3
2
1 9
8
10
7
5975/5973 MSD Chemical Ionization (CI) ion source assembly

Installing a Capillary Column
in the GC/MSD Interface
1. Condition the column.
2. Vent the MSD and open the analyzer chamber. Be sure you can see the end
of the GC/MSD interface.
3. If the CI interface is installed, remove the spring-loaded tip seal from the MSD end
of the interface.
4. Slide an interface nut and conditioned ferrule onto the free end of the GC column.
The tapered end of the ferrule must point towards the nut.
5. Slide the column into the GC/MSD interface until you can pull it out through
the analyzer chamber.
Tips & Tools 6. Break 1 cm off the end of the column. Do not let any column fragments fall into the
analyzer chamber. They could damage the turbo pump.
The column installation procedure 7. Clean the outside of the free end of the column with a lint-free cloth moistened
for the 5975 MSDs is different with methanol.
from that for most previous MSDs.
Using the procedure from another 8. Adjust the column.
instrument may result in poor 5975 – Push the column through, and then let it pass the end of the Transferline by
sensitivity and possible damage 1-2 mm. With the analyzer door partially open, view through the glass plate to see
to the MSD. the column protrude.
5973 – Push the column through, and then let it pass the end of the Transferline by
1-2 mm as seen with the analyzer door open from that side.
5972 – Push the column in all the way and then pull it back about 1-2 mm.
Use the flashlight and magnifying glass if necessary to see the end of the column
inside the analyzer changer. Do not use your finger to feel for the column end.
9. Hand-tighten the nut. Make sure the position of the column does not change as you
tighten the nut. Reinstall the spring-loaded tip seal if it was removed earlier.
10. Check the GC oven to be sure that the column does not touch the oven walls.
11. Tighten the nut 1/4 to 1/2 turn. Check the tightness after one or two heat cycles.

GC/MS Systems
Installing a capillary column in the GC/MSD interface
Analyzer chamber Interface column nut
Column
GC/MSD interface
(MSD end)
GC/MSD interface
1 to 2 mm (GC end)
GC
MSD
QuickSwap MS Interface Restrictors

Agilent's QuickSwap capillary flow technology module and pre-swaged fused silica
tubing restrictors can increase the productivity of your Agilent 5973N and 5975 inert
MSD systems, allowing you to change columns without venting the MSD. QuickSwap
not included.
These restrictors are prefabricated for convenience and ease of use. For applications
requiring other restrictor sizes, Agilent offers a wide variety of deactivated fused silica
tubing, SilTite ferrules and swaging tools.
QuickSwap restrictor
QuickSwap MS Interface Restrictors

Description ID (mm) Unit Part No.
Quick Swap Restrictor 0.092 4/pk G3185-60361

Quick Swap Restrictor Variety Pack, 2 each of the above ID restrictors G3185-60300

MSD Filaments
Like the filaments in an incandescent light bulb, the ion source filaments will eventually
burn out. Certain practices will reduce the chance of early failure.
• When setting up data acquisition parameters, set the solvent delay so that the analyzer
will not turn on while the solvent peak is eluting.
• When the software prompts 'Override solvent delay at the beginning of a run' always
select 'No.'
• Higher emission current will reduce filament life.
• If you are controlling your MSD from the Edit Parameters screen, always select 'MS Off'
before changing any of the filament parameters.
EI high temperature filament, G2590-60053
MSD Filaments
Description 5975 Series 5973 Series 5972 Series 5971 Series
Filament assembly (EI) G2590-60053 G2590-60053 G2590-60053 05971-60140

Filament assembly (CI) G1099-80053 G1099-80053
Micro ion vacuum gauge G3170-80001
Triode gauge tube for measuring vacuum 0960-0897
Tips & Tools

It is very useful to switch from one filament to the other every three months so
that when filament fails, you know the other will fail soon. This will allow you
to change both filaments at the same time. Since the GC/MS system is
already vented, it's a good idea to replace other supplies in the flowpath at
the same time as the filaments.

GC/MS Systems
Quadrupole Mass Filter

The mass filter does not require periodic maintenance. It should not be removed from the
radiator or distributed in any way.
• Never put the quadrupole in an ultrasonic cleaner.
• Never change the physical orientation of the quadrupole mass filter.
• The fused-quartz quadrupole is fragile and will break if dropped or handle roughly.
• The material in the cusps of the quadrupole is very hygroscopic. If exposed to water,
the quadrupole must be dried very slowly to prevent damage.
• Cleaning techniques appropriate for other manufacturers' instruments are not suitable
for Agilent MSDs – and may actually harm the mass filter.
• To save time and effort, use only Agilent MSD mass filters, which do not require
periodic cleaning or maintenance.
• In case of extreme contamination, contact a trained Agilent service representative to
perform the mass filter cleaning.

Vacuum Systems and Pumps
The vacuum system creates the high vacuum (low pressure) required for the MSD to
operate. Without this vacuum, the molecular mean free path is too short.
Ions cannot travel from the ion source through the mass filter to the electron multiplier
(detector) without colliding with other molecules.
The main components of the vacuum system are:
• Vacuum manifold
• Foreline gauge
• Calibration valve
• Gauge controller (optional)
• Vacuum seals
• Foreline pump and/or trap
• Diffusion/turbo pump and fan
• High vacuum gauge tube
Tips & Tools

Keeping a pan under the vacuum pump helps to detect and identify
the origin of oil leaks.

GC/MS Systems
Pressure Symptoms
This section describes unusual pressure Pressure Symptoms

readings and their possible causes. The
symptoms in this section are based on Symptoms Possible Causes
typical pressures. At typical column flow Foreline pressure is too high.
rates (0.5 - 2.0 mL/min), the foreline
pressure will be approximately 20 to 100 • Pressure is above 100 mTorr. • Column (carrier gas) flow is too high.
mTorr. The vacuum manifold pressure will • Pressure for a given column flow has • Wrong carrier gas.
be approximately 1 x 10-6 to 1.4 x 10-4 Torr. increased over time. • Air leak (normally at transferline interface).
• Foreline pump oil level is low or oil is contaminated.
These pressures can vary widely from • Foreline hose is constricted.
instrument to instrument, so it is important • Foreline gauge is not working correctly.
that you are familiar with the pressures • Foreline pump is not working correctly.
that are typical for your instrument at a Foreline pressure is too low.
given carrier gas flow and oven
temperature. • Pressure is below 20 mTorr. • Column (carrier gas) flow is too low.
• Wrong carrier gas.
The foreline pressures listed can only be • Column plugged or crushed by an overtightened nut.
measured on diffusion pump-equipped • Empty or insufficient carrier gas supply.
systems. Turbomolecular pumps are • Bent or pinched carrier gas tubing.
controlled according to their speed and do • Foreline gauge is not working correctly.
not have foreline pressure gauges. Vacuum manifold pressure is too high.
The vacuum manifold pressures can only • Pressure is above 1.4 x 10-4 Torr. • Column (carrier gas) flow is too high.
be measured if your system is equipped • Pressure for a given column flow has • Wrong carrier gas.
with the optional gauge controller. increased over time. • Air leak.
• Foreline pump is not working correctly.
• Diffusion pump fluid level is low or fluid
is contaminated.
• Defective gauge controller.
• Faulty ion gauge tube.
Vacuum manifold pressure is too low.
• Pressure is below 1.4 x 10-4 Torr. • Column (carrier gas) flow is too low.
• Wrong carrier gas.
• Column plugged or crushed by an overtightened nut.
• Empty or insufficient carrier gas supply
• Bent or pinched carrier gas tubing.
• Defective gauge controller.
• Faulty ion gauge tube.

Diffusion Pump
It is not necessary to change the diffusion pump fluid more than once a year, unless
you observe symptoms that suggest a problem with the diffusion pump fluid. The MSD
must be vented in order to check the diffusion pump fluid (except for the 5975/5973).
Therefore, the best time to check the fluid is when the instrument is already vented
for other maintenance.
How to Check the Fluid Level

5972/5971 Series
• If it is not vented already, shut down and vent the MSD according to instrument manual.
• Unplug the MSD power cord.
• Remove the pump and cover the top with aluminum foil.
• After heating the pump in a GC oven at 60°C for 15 minutes to make the fluid flow
down into the reservoir at the bottom, remove the stack parts.
• Inspect the pump fluid. If the fluid is discolored or contains particulate material,
the fluid must be changed.
• Use a metal ruler to determine the depth of the fluid. A pump that has been in
operation should have a pool 9 mm +/- 1 mm deep. Fluid in freshly charged pumps
will be 12 mm deep. It is normal that up to 2 mL of oil may be in the rear portion
of the vacuum manifold. The recommended total fluid charge for the 5971/5972
is 18 mL (+/- 2 mL).
5975/5973 Series
• Use the sight glass to determine the depth of the fluid. The recommended total fluid
charge is approximately 37 mL.

GC/MS Systems
Foreline Pump
The oil in the foreline or rough pump should be replaced on average once every six
months, but can vary depending upon applications. After oil replacement, if a foreline trap
is present, the molecular sieves should be replaced.
Avoid contact with the pump oil. The residue from some samples may be toxic. Dispense
of used oil properly.
Pump Oils
Description 5975 Series 5973 Series 5972/5971 Series
Diffusion pump fluid, 18.5 mL 6040-0809 6040-0809 6040-0809

Foreline Pump 2 required 2 required
Foreline pump oil, P3, 0.5 L 6040-0621
Foreline pump oil, Inland 45, 1 L 6040-0834 6040-0834
High vacuum grease, 25 g 6040-0289 6040-0289 6040-0834
General Instructions on How to Replace the Pump Oil

• Vent and shut down the MSD.
• Place a container under the drain plug on the foreline pump.
• Remove the fill cap from the top of the pump to expose the fill hole.
• Remove the drain plug from the pump.
• Reconnect the MSD to its power source. Switch on for 2 or 3 seconds, and then switch
it off again. This displaces old oil from the internal pump cavities. Disconnect the power
cord again.
• Reinstall the drain plug and pour pump oil into the fill hole.
• Reinstall the fill cap.
• Reconnect the MSD power cord.
• Start up and pump down the MSD according to the Instrument Manual procedure.

MSD Electron Multipliers
and Replacement Horn
The lifetime of an electron multiplier is directly related to the current that flows through it
and the extent of contamination or condensation that it experiences. Replace the electron
multiplier or replacement horn when voltage is over 2500 volts. To maximize electron
multiplier life:
• Maintain the best possible vacuum, especially in the analyzer manifold.
• Use extreme caution and be conservative with venting, pumpdown, and all vacuum
system procedures to keep pump fluid background to a minimum.
• After venting, allow four hours for pumpdown and thermal equilibration
before scanning.
• Actively look for background contamination and leaks and repair them immediately.
• Don't tune excessively. PFTBA can result in higher background over an extended
period of time.
• Replace the electron multiplier if vacuum is poor or voltage is over 2500 volts.
MSD Electron Multipliers and Replacement Horn

Description 5975 Series 5973 Series 5972/5971 Series
Electron multiplier replacement horn 05971-80103 05971-80103 05971-80103

Use with electron multipliers with
"straight" horns.
Tips & Tools Triple axis detector assembly* G3170-80100
These are the recommended Triple axis electron multiplier G3170-80103
replacement multipliers and horns
EM signal wire, low noise detector G3170-80008
for the MSD. Other manufacturers'
products may be incompatible with High energy dynode G1099-80001
Agilent instruments and can result Electron multiplier 05971-80102
in reduced sensitivity, lifetime, and
*Include on 5975 TAD systems
noise problems.

GC/MS Systems
MS standards
MS Test and Performance Samples
Tuning Samples Performance Verification Samples Checkout Samples
MSD EI Tune CI Tune EI Negative Positive HighMass Semi-Volatile Volatile

Mode CI Mode CI
5975 PFTBA PFDTD OFN OFN Benzophenone PFHT DFTPP BFB
1 pg/µL 100 pg/µL 100 pg/µL
5973 PFTBA PFDTD OFN OFN Benzophenone DFTPP BFB
1 pg/µL 1 pg/µL 100 pg/µL
5972 PFTBA PFTBA HCB N/A Benzophenone DFTPP BFB
10 pg/µL 100 pg/µL
5971 PFTBA PFTBA Methyl Stearate N/A Benzophenone DFTPP BFB
500 pg/µL 100 pg/µL
GCD PFTBA N/A Sample A N/A N/A DFTPP BFB
10 ng/µL
Tips & Tools

Each GC/MS has a specific test and performance sample. Refer to
the chart for the exact sample. All volumes are approximately 0.5-1 mL
unless otherwise specified.

Calibration
The calibration valve is an electromechanical valve with a vial for tuning compounds.
Perfluorotributylamine (PFTBA) is the most commonly used tuning compound. It is
required for automatic tuning of the MSD in EI mode. The tuning compound is usually
a liquid but can be a volatile or semi-volatile solid.
The calibration vial can be refilled without venting the system. Fill the vial to 0.5 cm from
the top. Do not overfill. Air is trapped in the vial when it is refilled. This sometimes causes
an "Excess source pressure" error message during the first tune after refilling. This is more
likely if the vial is overfilled. Be sure to purge the air upon refilling the vial.
Calibration Standards
Description 5975 Series 5973 Series 5972 Series 5971 Series
OFN, 1 pg/µL 5188-5348 5188-5348

OFN, 100 fg/µL 5188-5347
Benzophenone, 100 pg/µL 8500-5440 8500-5440 8500-5440 8500-5440
PHFT, 100 pg/µL 5188-5357
PFTBA sample, certified, 10 g 8500-0656 8500-0656 8500-0656 8500-0656
PFTBA MS Sample Kit, 0.5 mL 05971-60571 05971-60571
PFDTD calibrant 8500-8510 8500-8510
Evaluation sample 05970-60045 05970-60045 05970-60045 05970-60045
Solution of dodecane, biphenyl,
p-cholorodiphenyl, and Methyl
palmitate in isooctane.
Six 1.0 mL ampoules: 4 at 10 ng/µL,
1 at 100 ng/µL, 1 at 100 pg/µL.
p-Bromofluorobenzene (BFB), 8500-5851 8500-5851 8500-5851 8500-5851
25 µg/mL
Hexachlorobenzene 10 pg/µL, 1 ng/µL 8500-5808
Methyl stearate (in methanol); 05990-60075
1 ng/µL, 2 ea
GC/MS tuning standard 8500-5995 8500-5995 8500-5995 8500-5995

The Agilent J&W GC
Column Selection Guide
Your single source for the highest-performing
GC columns, plus expert advice to help you
achieve reliable results, faster.
From low-bleed columns for MS… to premium polysiloxane columns…

to specialty columns for pesticide, petroleum, or life science applications…
our GC Column Selection Guide has everything you need to analyze
your most challenging compounds. You will also find…
• A review of GC theory, including retention time, separation factor,

theoretical plates, resolution, and more.
• Strategies for increasing your productivity and speeding up the
troubleshooting process.
• The most current method development procedures.
• Concise column selection flowcharts with industry-specific guidelines.
To request your copy of this concise, easy-to-use resource,

go to www.agilent.com/chem/guides. Or ask your
local Agilent Representative or Agilent Authorized Distributor
for publication number 5989-6159EN.

How to contact Agilent
For the latest information on the complete line
of Agilent Technologies columns and supplies:
• Visit our Web site: www.agilent.com/chem

• Contact your local Agilent sales office
• Contact your local Agilent Authorized Distributor
Information, descriptions, and specifications

in this publication are subject to change without notice.
© Agilent Technologies, Inc. 2008

Printed in the USA April 14, 2008
5989-7612EN

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Maintaining your Agilent

GC and GC/MS Systems

Our measure is your success.

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Sample Introduction ..................................................................................19

GC/MS Systems ......................................................................................115

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Order online at www.agilent.com/chem/store 1

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Inlet Pressure Settings (psi)

Carrier max 170 120 120 120 120

Detector Pressure Settings (psi)

Hydrogen 35-100 35-100 45-100

Conversions: 1 psi = 6.8947, kPa = 0.068947, Bar = 0.068 ATM

2 Order online at www.agilent.com/chem/store

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Gas Purity and Selection

Electron capture Hydrogen Argon/methane Nitrogen Anode purge must

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Hydrocarbons and Halocarbons

Gas Purification Systems

4 Order online at www.agilent.com/chem/store

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Carrier Gas Purification

Regulator = brass dual stage regulator

Detector Gas Purification Key

ECD make-up 3 = Oxygen Trap

4 = Indicating Oxygen Trap

MS carrier gas 6 = Combination Trap for

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6 Order online at www.agilent.com/chem/store

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Moisture (Water) Traps

Molecular Sieve 13X and Indicating 4A (MT Series)

Molecular Sieve 5A and Indicating Drierite (MT-D Series)

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Glass Indicating Moisture Traps (GMT and LGMT Series)

Moisture Removal S-Traps

8 Order online at www.agilent.com/chem/store

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Hydrocarbon Removal S-Traps

Capillary Grade Hydrocarbon Traps (HT3 Series)

Tips & Tools

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Indicating Oxygen Traps (IOT and LIOT Series)

Big Oxygen Traps (BOT Series)

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Hydrocarbon/Moisture Traps (HMT Series)

Combination Traps for Chemical Ionization MS

Big Universal Traps (RMS Series)

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Renewable Gas Purification System

Renewable gas purifier system startup kit G3440-60004