Origin of Life
Origin of Life
Origin of Life
since Darwins time we have learned how to very Major Events in the Origin of Life:
accurately date rocks & fossils by radioactive
decay 1. Suitable Environment
Decay System Half Life Useful Timespan
Rubidium! Strontium
Lutetium ! Hafnium
1.42X10-11 yr-1
1.94x10-11 yr-1
48.8 BY
35.7±1.2BY
2. Formation of Basic Building Blocks
Uranium! Lead 1.55 X10-10 yr-1 4.47BY
Potassium ! Argon 0.581 X10-10 yr-1 1.93BY
14
C 5568±30 yr3 3. Metabolism & the Formation of Large
Polymers
from the Fossil record we have learned:
4. Compartmentalization; ie. Cells
!the early earth was very different from today
5. Operating Instructions
!all forms of life did not appear at the same time
These are probably not sequential events:
!life progressed from small, simple forms to
more complex and larger forms most or all probably occurred at the same time
eg. interstate system: none ! fully developed
Our thoughts on what the first cell were like can only
be based on what cells are like today, but…
it is possible the first cells were considerably less complex and
efficient ! perhaps very little like cells around today
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1. Suitable Environment within about 150 MY of earth’s formation, it
collided with a smaller planet to form the
4.54 BY: Earth formed moon
the sun is a second or third generation star it remelted the earth and reset the timescale of
life’s origin
even today, a star explodes each second with a
brightness greater than a galaxy oldest known piece of earth’s crust is 4.4 BY old
! all matter on earth has been through 1 or 2 as earth cooled, water condensed to form rivers,
previous cycles of “stellar alchemy” lakes and oceans
surface temperatures up to 1000-3000º C up to 1/3rd of water on the earth (and in us) may have
come from comets
no solid ground
even today 10 M small comets hit earth each yr
no liquid water (no oceans, lakes) ! each comet = wt of 60 compact cars together
only steam from geysers, volcanoes
if this is same as rate throughout earths history it would
equal the volume of today’s oceans
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[todays atm: 78% N2, 20% O2, 4% H2O, 0.03% CO2] some believe that the spontaneous origin of life
would be impossible:
CHONPCa all major atoms were available
the odds of life arising on the early earth are about the
there remained lots of energy sources on the early same as the odds of a tornado going through a
earth: junkyard and randomly assembling a fully functional
jumbo jet, 747
How quickly did life appear after this? some estimate there are thousands of tons of earth
rock on the moon
if the origin of life occurred relatively quickly after if we can find rocks older than 3.5 BY we might be
conditions were suitable, it would indicate that life able to find fossils or signs of life in them
did indeed begin very simply and that natural laws
earliest true fossils appear 3.5 BY
are conducive to its origin given the suitable
conditions and materials;
oldest “trace fossils” = 3.85 BY, Greenland
! the origin of life is inevitable given the proper
conditions
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by 3.8 BY rocks show high concentrations of 2. Formation of Basic Building Blocks: small
carbon; indications are that life was thriving organic molecules
then
~4.0-3.9 BY ago there were ideal conditions for
!life must have begun 4.0 to 3.8 BY ago chemical reactions that could produce small
organic molecules:
geological evidence also points to the fact that
sugars, amino acids, nucleotides, fatty acids, etc
this earliest indications of life were due to
photosynthetic life Miller and Urey (1953) and others later modeled the
composition of the early ocean & atmosphere and
but photosynthysis is an ‘advanced’ form of used electrical sparks to mimic energy
energy procurement so life must have
appeared BEFORE 3.8 BY produced:
all 20 amino acids
As soon as there was a suitable environment, several sugars
life showed up lipids
purines and pyrimidines
short chains of nucleotides
ATP
short chains of nucleotides
to form polypeptides
3. Metabolism and the Formation of large
some believe, given enough time, such reactions were
complex, interacting inevitable on early earth
even a single living cell consist of 1000’s of highly also, HCN was common then and is commonly
organized chemical reactions, all occurring at the used as a catalyst in chemistry labs
same time
over millions of years large polymers could
all these reactions together are called metabolism conceivably be constructed
in living cells today, each of these reactions requires a another question is how any reactions got organized
specific enzyme (= organic catalyst) into something we could call metabolism
! but enzymes are proteins (large polymers); modern cells today have 10’s of 1000’s of
proteins weren’t around yet chemical reactions occurring each second
without enzymes, need high temperatures or some all of these reactions are interlinked and
kind of catalyst to do these reactions coordinated into numerous reaction pathways
there were many high energy sources in these scientists today believe that all these complex
early days: pathways could have originated from the most
basic set of reactions that occur in every cell
!lots of volcanic activity
! the energy producing pathway
! many more deep ocean thermal vents
the simplest such pathway may include only a
!horrendous thunder & lightning few dozen interacting molecules
!lots of UV radiation (earth had no ozone from this set of chemicals all other reactions
shield) could be derived
b. iron pyrite around hydrothermal vents !the “environment” would “select” for some over others
could become organized into living self one way to get an idea of the likelihood of life
autonomous, reproducing cells appearing is to consider how ordered life is
compared to nonliving matter
cells need instructions to operate propery
how many “instructions” do cells need to function
! need to control metabolism properly
! need to be able to copy and pass on these
instructions to new cells we can view the genetic code as “information storage”
of data bytes
today the DNA in chromosomes contain all the
each byte is 1 unit of information (1 byte = 8 bits)
instructions for life
gigabytes (billions of bytes)
Shared Genes
= the amount of information stored in typical eucaryote
the simplest life today are the procaryotes cells today
they most likely developed from the same ancestor megabytes (millions of bytes)
by looking at genes shared between them we can get = the amount of information stored in typical procaryote
cells (~4000 genes)
an idea of what their common ancestor was like
comparable to the info storage in old Pentium and
60 genes are shared between the two groups Power PC computers
kilobytes
Information from how these genes work suggest that
the earliest cells might have lived in volcanic hot =the amount of information stored in the simplest
springs procaryote cells capable of independent existence
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comparable to the first desktop computers on the
market
RNA uses that code to make either
eg. even (nonliving) viruses with 2% as much genetic
info as E coli have ~15 kilobytes enzymes for metabolism
or
eg. one typical gene contains ~ 300 bytes new copies of DNA for reproduction
some biologists are trying to determine the minimum
number of genes that any living organism needs enzymes metabolism
biologists have succeeded in randomly producing very enzymes are some of the largest, most complex
small DNA molecules of about 50 nucleotides organic molecules in a cell
from a mixture of simple building blocks
computer analysis indicates that today’s enzymes
! much less than that needed for even 1 gene
could have originated from a very few, much
based on natural laws, the early earth could have simpler enzyme molecules constructed with a
randomly accumulated no more than ~25 bytes much simpler genetic code than the one in cells
of information by pure chance today
if life on earth had a spontaneous origin there must A simpler molecule than DNA?
have been some simpler intermediate state
many believe that for life to appear some simpler
In every cell today: genetic material had to be there 1st
many traces of the ancient RNA-dominated world RNA is not very stable, so cells that began to
remain in our genome today store information in a much more stable but
similar molecule, DNA, became much more
eg. ALL life today contains a particular sequence that codes for successful
an RNA enzyme that plays a key role on the synthesis of
proteins
once DNA appeared, natural selection would have
eg. at least 100 genes can be traced back to this “universal greatly favored it over RNA
common ancestor to ALL life
eventually ALL the RNA only cells would have
gone extinct, leaving no trace
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= autotrophs (=”self feeders”)
What were the first cells:
other organisms must consume preformed organic
1. 1st cells were Prokaryotes molecules to break down for energy
= heterotrophs ( ~”feed on others”)
the earliest fossils we find are prokaryotes
of the two, autotrophs require considerably more
the only fossils we find for the first 2 Billion cellular “machinery” to make their own
years of life are prokaryotes sugars more genes are required; more
complex
!small, simple, inefficient metabolism, little
internal structure 3.9 BY ago the oceans were thick with 100’s
Millions of years of accumulated organic
2. simpler cell membrane chemicals
protein analysis indicates that the earliest cell There were plenty of organic molecules after 100’s
membranes were much simpler and “leakier” of millions of years of earth history
than modern cell membranes
life didn’t require primary producers
allowed much greater exchange of genes, ! the planet was awash in “food”
nutrients, enzymes, proteins and products
! First cells were simpler heterotrophs
3. First cells were heterotrophs
! able to capitalize on this abundance of
all life requires nutrients and energy nutrients
all life produces the energy they need by breaking 4. First cells produced energy anaerobically
down sugars and other organic molecules
= respiration there was no free oxygen (O2) on the early earth,
either in atmosphere or in oceans
some organisms are able to make their own
sugars the breakdown of sugars to produce energy
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= respiration
= fermentation
respiration can occur with or without O2
fermenters excrete acids, alcohols, etc.
! with O2 the process is very efficient
(chemicals that contain less energy than the food
but more complex ingested)
requires additional pathways and vs aerobic respiration that produces CO2 & H2O
enzymes, ie. more genes
= aerobic respiration 5. 1st cells used RNA as genetic instructions
! without O2 some energy can be made RNA molecular evidence supports the idea that for
the 1st billion years of life RNA was the
it is a much simpler process, fewer primary genetic material
enzymes required, fewer genes
the genes that work with DNA are much younger
= anaerobic respiration
consist of colonies of bacteria and cyanobacteria bacteria, esp spores, can survive very harsh
in jellylike secretions interspersed with conditions
sediment layers eg. some bacteria (Microbispora) that were on the shuttle
Columbia, survived the fiery reentry
produces a banding pattern
but: but only traveled about 1/5th the speed of a
meteorite
B. Deep Ocean Thermal Vents
still survived extreme heat and impact
less exposed seafloor and
that was 6 times faster than anything tested before
molecular biology supports idea that earliest life ! just defers the problem
thrived in hot conditions and may have used
sulfur compounds – common conditions in
vent communities
LUCA (Last Universal Common Ancestor) found in all other kingdoms today were
already present in bacteria
for the first billion years or so of earths history there
with the exception of only a few exotic chemicals
lived a single kind of organism in the earth’s
oceans = LUCA eg, essential oils and hallucinogens of flowering
plants
the ocean was a global genetic swap shop for 100’s of
eg. animal venoms
millions of years
!photosynthetic bacteria were producing oxygen
! free exchange; no competition gas; building up in the atmosphere
probably all the cells in the world’s oceans shared the earth’s modern atmosphere and surface
genes, proteins, nutrients, enzymes, metabolic were largely established by bacteria
pathways
it was only when some of the cells evolved ways to
none lived independently from the others produce everything they needed within their own
cell did life begin to diversify into the major
they were all interdependent on each other domains that exist today:
archaea
by ~1.5 BY ago most “biochemical evolution” had bacteria
been accomplished: eukaryotes
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Major Events in the History of Life
2. Aerobic Respiration (?2.0 by)
3.85 BY
indirect evidence that life may have existed 3. Eukaryotes (2.9 by)
Once the first living cells arose, 3.8 BY ago, Natural the ocean was a global genetic swap shop for 100’s of
Selection easily explains the appearance of all millions of years
other species
by ~1.5 BY ago most “biochemical evolution” had
Chemical evolution became biological evolution been accomplished:
_____________________________________
!prokaryotes could assemble and disassemble all
In 1800’s, Challenger Expedition – deep sea collections
molecules of modern life; virtually all
! thought they had found the first life forms: metabolic pathways:
Bathybius haekelii – “primordial slime” photosynthesis
fermentation
! turned out to be precipitate formed when sediment aerobic respiration
was mixed with alcohol
!all the unique and unusual metabolic pathways
Once life arose, what were some of the major events
found in all other kingdoms today were
that occurred from then until now?
already present in bacteria
Major events in History of Life (fossils): with the exception of only a few exotic chemicals
bacteria
archaea
eukaryotes
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What is life?
History of the Earth in a Single Year
days yrs
b. p. “Living things are systems that tend to respond to changes
(1) Jan 1, 12:00am - earth formed (4.6 BY) in their environment, and inside themselves, in such a way as
(63) May 5: - 1st Cells (3.8 BY) to promote their own continuation.”
-Witzany
(135) May 16: - O2 producing photosynthesis (2.9 BY)
“Life is the representation, the presencing of past chemistries,
(206) July 26: - aerobic respiration (~2.0 BY) a past environment of the early Earth that, because of life,
(222) Aug 11: - origin of eukaryotes (1.8 BY) remains on the modern Earth.”
-Margulis & Sagan
(301) Oct 28: - multicellularity-1st animal fossils (800 MY)
“It is the watery, membrane-bound encapsulation of
(320) Nov 16: - O2 levels near 20%; Cambrian Explosion (570 MY) spacetime.”
-Margulis & Sagan
(324) Nov 20: - earliest vertebrate (520 MY)
st “Life is a potentially self-perpetuating open system of linked
(329) Nov 24: - 1 plant fossils (460 MY)
organic reactions, catalyzed simultaneously and almost
(335) Nov 30: - 1st land vertebrate fossils (380 MY) isothermally by complex chemicals that are themselves
produced by the open system.”
(345) Dec 10: - Earth’s greatest mass extinction (250 MY)
-author unknown
(363) Dec 28: - spread of grasses “A network of inferior negative feedbacks subordinated
to a superior positive feedback.”
(364) Dec 30, 9:00pm: - 1st human fossils -Korzeniewski
Dec 30, 11:24pm: - 1st Homo sapiens fossils “Preserving the past, making a difference between past
and present, life binds time, expanding complexity and
creating new problems for itself.”
-Margulis & Sagan
Life, Biodiversity, History: Origins of Life, Ziser, Lecture Notes, 2015.1 33 Life, Biodiversity, History: Origins of Life, Ziser, Lecture Notes, 2015.1 34