Potential Therapeutic Targets For Combination Anti
Potential Therapeutic Targets For Combination Anti
Potential Therapeutic Targets For Combination Anti
Review
Potential Therapeutic Targets for Combination Antibody
Therapy against Pseudomonas aeruginosa Infections
Luke L. Proctor 1 , Whitney L. Ward 1 , Conner S. Roggy 1 , Alexandra G. Koontz 1 , Katie M. Clark 1 ,
Alyssa P. Quinn 1 , Meredith Schroeder 2 , Amanda E. Brooks 1 , James M. Small 1 , Francina D. Towne 1, *
and Benjamin D. Brooks 1, *
Abstract: Despite advances in antimicrobial therapy and even the advent of some effective vaccines,
Pseudomonas aeruginosa (P. aeruginosa) remains a significant cause of infectious disease, primarily
due to antibiotic resistance. Although P. aeruginosa is commonly treatable with readily available
therapeutics, these therapies are not always efficacious, particularly for certain classes of patients
(e.g., cystic fibrosis (CF)) and for drug-resistant strains. Multi-drug resistant P. aeruginosa infections
Citation: Proctor, L.L.; Ward, W.L.;
are listed on both the CDC’s and WHO’s list of serious worldwide threats. This increasing emergence
Roggy, C.S.; Koontz, A.G.; Clark,
of drug resistance and prevalence of P. aeruginosa highlights the need to identify new therapeutic
K.M.; Quinn, A.P.; Schroeder, M.;
strategies. Combinations of monoclonal antibodies against different targets and epitopes have
Brooks, A.E.; Small, J.M.; Towne, F.D.;
demonstrated synergistic efficacy with each other as well as in combination with antimicrobial agents
et al. Potential Therapeutic Targets
for Combination Antibody Therapy
typically used to treat these infections. Such a strategy has reduced the ability of infectious agents
against Pseudomonas aeruginosa to develop resistance. This manuscript details the development of potential therapeutic targets for
Infections. Antibiotics 2021, 10, 1530. polyclonal antibody therapies to combat the emergence of multidrug-resistant P. aeruginosa infections.
https://doi.org/10.3390/ In particular, potential drug targets for combinational immunotherapy against P. aeruginosa are
antibiotics10121530 identified to combat current and future drug resistance.
Academic Editors: Jürgen Brem, Keywords: polyclonal antibodies; antibiotic resistance; antibiotics; combination therapies; Pseudomonas
Sónia Silva, Mark G. Moloney and aeruginosa; immunotherapies
Daniele Castagnolo
Figure 1.
Figure 1. Types
Types of
of Acute
Acute P.
P.Aeruginosa
AeruginosaInfections
Infections [5].
[5]. P.
P. aeruginosa
aeruginosa is
is prevalent
prevalent in
in skin
skin and
and soft
soft tissue
tissue infections (top right)
including trauma,
including trauma, burns,
burns, and
and dermatitis.
dermatitis. It
It also
also commonly
commonly causes causes swimmer’s’
swimmer’s’ earear (external
(external otitis),
otitis), hot
hot tub
tub folliculitis,
folliculitis, and
and
ocular infections,
ocular infections,bacteremia
bacteremiaandand septicemia,
septicemia, especially
especially in immunocompromised
in immunocompromised patients,
patients, and endocarditis
and endocarditis associated
associated with
with
IV IV users
drug drug and
users and prosthetic
prosthetic heart (bottom
heart valves valves (bottom
right). P.right). P. aeruginosa
aeruginosa can also
can also cause cause
central centralsystem
nervous nervous system
(CNS) (CNS)
infections
infections such as meningitis and brain abscess (top left), bone and joint infections, including osteomyelitis and osteochon-
such as meningitis and brain abscess (top left), bone and joint infections, including osteomyelitis and osteochondritis,
dritis, respiratory tract infections, and hospital-acquired urinary tract infections (UTIs; bottom left). P. aeruginosa is also
respiratory tract infections, and hospital-acquired urinary tract infections (UTIs; bottom left). P. aeruginosa is also resistant to
resistant to many common antibiotics [5].
many common antibiotics [5].
The vast array of infectious complications that can arise from normal commensal
and environmental strains of P. aeruginosa indicates that it is an opportunistic, adaptable,
Antibiotics 2021, 10, 1530 3 of 31
common environmental pathogen, making P. aeruginosa very robust and difficult to treat.
Several antimicrobial agents possess the ability to treat P. aeruginosa infections [3]; however,
successful clinical treatment regimens should include pre-treatment sensitivity testing, as
different strains possess widely different antimicrobial resistances. Importantly, treatment
is often dictated by the antibiogram of a specific hospital or region. P. aeruginosa is often sus-
ceptible to first-line agents, including beta-lactam antibiotics (e.g., piperacillin-tazobactam
and ticarcillin-clavulanate), cephalosporins (e.g., ceftazidime, cefoperazone, and cefepime),
and monobactams (e.g., Aztreonam). Carbapenems (e.g., meropenem and doripenem),
which were historically seen as the “big gun”, last-ditch antimicrobials, can be used to treat
highly resistant infections. However, as of 2019, the World Health Organization has listed
carbapenem-resistant P. aeruginosa as one of three bacterial diseases in critical need of new
treatment strategies, with up to 14% of P. aeruginosa isolates in the U.S. in 2019 expressing
carbapenem resistance (Figure 2) [6]. This highlights the need for expert guidance regard-
ing treating carbapenem-resistant infections. Interestingly, fluoroquinolones, especially
ciprofloxacin, are the only class of oral antibiotics with specifically antipseudomonal activ-
ity. Regardless, for those with risk for serious infections, combination therapy with agents
from different drug classes is generally suggested. Most commonly, a combination of a
beta-lactam along with an aminoglycoside is chosen [3,7]. However, resistance to these
standard antimicrobials is rapidly growing, particularly in hospital-acquired isolates [8]. In
fact, 2.8 million cases of multidrug-resistant bacterial infections were reported in the U.S.
alone in 2019 [9]. Unfortunately, although using two classes of drugs synergistically has
proven to be helpful, it has not solved the problem of multidrug-resistant, extensively drug-
resistant, or pandrug-resistant strains. Approaching pathogens with an “out of the box”
approach, such as that explored in this review, may be necessary to aid the antimicrobial
strategy of treatment in P. aeruginosa infections [3,10].
In the ongoing battle between humans and the pathogenic microbes that cause disease,
the CDC recognizes that the development of newer antimicrobial pharmacotherapeutics
continues to be a pressing need, despite several current pharmaceutical agents that are
reserved for the treatment of multidrug-resistant isolates [7]. In response to advancing
antimicrobial pharmacotherapies, particularly bactericidal therapies that impose selective
pressure, bacterial resistance mechanisms continue to evolve as opportunistic microbes
adapt to an ever-changing therapeutic landscape. The evolution of multidrug-resistant
P. aeruginosa can be considered as a case study based on its sophisticated quorum sensing
communication system and phenotypic plasticity that has allowed it to adapt, survive,
and thrive in a wide variety of environmental (e.g., aquatic and soil) and host condi-
tions [11]. Among clinical isolates, a wide range of phenotypic variation has been identified
including hyperpigmentation, small colony variant formation, autoaggregation, alginate
overproduction, and autolysis [12–16]. These phenotypes change and adapt as an infection
progresses, allowing for long-term survival in the differing conditions of the host [17].
The exact number of clinically significant strains of P. aeruginosa is unknown, but up to
40 individual strains were identified in the late 1970s, and as of 2019, there have been
at least 66 clinical strains and 19 environmental strains identified [18,19]. This versatil-
ity has led P. aeruginosa, which is prone to the development of antibiotic resistance that
renders current treatment options inadequate [2,8], to be categorized as part of the ESKAPE
(Enterococcus faecium Staphylococcus aureus, Klebsiella pneumonia, Acinetobacter baumannii,
P. aeruginosa, and Enterobacter species) group of bacteria, deemed of particularly great
health concern by the Infectious Diseases Society of America (IDSA) [20]. Microbial evolu-
tion to circumvent and resist antimicrobial therapies necessitates distinctly new approaches
to targeting multi-resistant bacterial species, which cause human disease and place a large
burden on the healthcare system.
Antibiotics 2021,10,
Antibiotics2021, 10,1530
x FOR PEER REVIEW 44 of
of 31
33
Figure 2.
Figure 2. Treatment
Treatment strategy
strategy for
for carbapenem-resistant
carbapenem-resistant P.
P.aeruginosa
aeruginosaisolates
isolates including
including future
future treatment
treatment options
options based
based on
on
combinatorial antibody therapies [21].
combinatorial antibody therapies [21].
Antibiotic
Antibiotic resistance
resistancecontinues
continues to increase
to increase through the development
through the development of beta-lactamase-
of beta-lac-
producing strains, shifts in porin conformations, efflux pumps, specific
tamase-producing strains, shifts in porin conformations, efflux pumps, specific antibiotic antibiotic inactivat-
ing enzymes,enzymes,
inactivating and non-specific porin modifications
and non-specific [8,22]. A deeper
porin modifications [8,22]. Aunderstanding of the
deeper understand-
mechanisms of resistance
ing of the mechanisms can informcan
of resistance drug discovery
inform and development
drug discovery efforts. A central
and development efforts.
mechanism in the development
A central mechanism of antibioticof
in the development resistance
antibiotic is the conversion
resistance to conversion
is the coordinatedto com-
co-
munal
ordinatedbiofilm growth.biofilm
communal growth. P.
As commensal Asaeruginosa
commensal changes to an opportunistic
P. aeruginosa changes to an pathogen
oppor-
or acquired
tunistic pathogenic
pathogen infection
or acquired is established,
pathogenic genotypic
infection and phenotypic
is established, genotypic changes occur.
and pheno-
Among the most important, P. aeruginosa switches from a more
typic changes occur. Among the most important, P. aeruginosa switches from a more anti- antibiotic susceptible, motile
planktonic phase tomotile
biotic susceptible, an antibiotic tolerant,
planktonic phase non-motile biofilm tolerant,
to an antibiotic phenotype. This switch
non-motile rep-
biofilm
resents a keyThis
phenotype. element
switchin the conversion
represents a keyto element
pathogenicity.
in the Importantly,
conversion tothis mucoid, biofilm
pathogenicity. Im-
phenotype is seen
portantly, this in overbiofilm
mucoid, 75% ofphenotype
CF-associated P. aeruginosa
is seen in over 75% infections [23,24]. Once
of CF-associated P. in its
aeru-
sessile phase, P. aeruginosa can attach to host epithelial cell layers to better
ginosa infections [23,24]. Once in its sessile phase, P. aeruginosa can attach to host epithelial avoid the host’s
immune
cell layers responses
to better[2]. avoid Although
the host’santi-P. aeruginosa
immune IgA antibodies
responses [2]. Althoughare also present
anti-P. lining
aeruginosa
the respiratory tract, limiting the spread of P. aeruginosa to the respiratory
IgA antibodies are also present lining the respiratory tract, limiting the spread of P. aeru- epithelium, they
have shown to be ineffective at eliminating infection [25]. Interestingly,
ginosa to the respiratory epithelium, they have shown to be ineffective at eliminating in- antibiotic use may
cause
fectionIgA deficiency
[25]. by inhibiting
Interestingly, antibiotic normal
use may microbiota
cause IgA anddeficiency
Toll-like receptor (TLR) signals
by inhibiting normal
that induce activating factors of IgA production in plasma cells.
microbiota and Toll-like receptor (TLR) signals that induce activating factors of IgA Therefore, excessive antibi-
pro-
otic use may further increase the risk of P. aeruginosa infection
duction in plasma cells. Therefore, excessive antibiotic use may further increase the or reinfection [25,26]. These
risk
problems underscore that passive immunity may provide the safest and most efficacious
of P. aeruginosa infection or reinfection [25,26]. These problems underscore that passive
therapeutic and even potentially prophylactic option. A thorough analysis of the varied
immunity may provide the safest and most efficacious therapeutic and even potentially
mechanisms of antibiotic resistance is beyond the scope of this review, but some of the
prophylactic option. A thorough analysis of the varied mechanisms of antibiotic resistance
types of drug resistance mechanisms in P. aeruginosa are shown in Figure 3 for reference.
Antibiotics 2021, 10, x FOR PEER REVIEW 5 of 33
Figure
Figure3.3.Mechanisms
Mechanismsof
ofantibiotic
antibiotic resistance
resistance in P. aeruginosa. These
P. aeruginosa. These include
includeall
allof
ofthe
themechanisms
mechanismsin
in blue and biofilms.
blue and biofilms.
Chronic
Chronicbacterial
bacterialinfections
infectionsare
areoften
oftenheralded
heraldedby bythe
thepresence
presence ofof aasubpopulation
subpopulation of of
persister
persistercells,
cells,bacterial
bacterialcells
cellscapable
capableofofsurviving
survivingan anantibiotic
antibioticassault.
assault.This
Thissubpopulation
subpopulation
of
of bacteria
bacteria is typically
typically present
presentininhigh
highnumbers
numbers in in bacterial
bacterial biofilms
biofilms [26].
[26]. Although
Although ini-
initially
their their
tially abilityability
to persist in the in
to persist presence of a bactericidal
the presence agent may
of a bactericidal be may
agent indicative of some of
be indicative in-
nate antibiotic
some resistance,
innate antibiotic a deepera dive
resistance, deeperinto theinto
dive mechanism suggestssuggests
the mechanism that thisthat
population
this pop-is
able to decrease
ulation is able totheir metabolic
decrease theirand growth and
metabolic activity
growthto a state of senescence,
activity to a state ofcircumventing
senescence,
antibiotic action, which often requires active metabolism or proliferation. According
circumventing antibiotic action, which often requires active metabolism or proliferation. to this
hypothesis, as borne out by numerous studies, persistence may be a transient
According to this hypothesis, as borne out by numerous studies, persistence may be a state, which
may or may
transient notwhich
state, be passed
may toor subsequent
may not be generations based on the
passed to subsequent underlying
generations mechanism
based on the
of action. Alternatively, several genes have been identified (e.g., hip-high persistence [27]
and GlpD—sn-glycerol-3-phosphate dehydrogenase [28]) and have been suggested to
confer phenotypic persistence, a characteristic which may prove heritable [29–31]. The
persister cell’s phenotypic switch, which is likely the result of complex signaling cascade(s),
Antibiotics 2021, 10, 1530 6 of 31
3. Description of Targets
Taking inspiration from the immune response and in the context of P. aeruginosa’s
life cycle and its antibiotic resistance mechanisms, several potential targets secreted by
P. aeruginosa were identified. These targets, outlined in Table 1, produce a wide variety of
Antibiotics 2021, 10, 1530 7 of 31
effects in hosts and the bacteria, contributing to the pathogenesis of the entire spectrum
of infections caused by this organism. Some of the most promising targets identified are
discussed in the following sections; however, a more complete list can be found in Table 1.
Identified targets are grouped into eight categories based on their function and location in
the cell.
Location or
Examples Activity/Effects on Host
Class
Alginate Antiphagocytic, resists opsonic killing
Endotoxic, antiphagocytic, avoids preformed antibody to
Lipopolysaccharide
previously encountered O antigens
Twitching motility, biofilm formation, adherence to
Pili (produced by type IV secretion)
Cell surface host tissues
Motility, biofilm formation, adherence to host tissues and
Flagella
mucin components
PcrG, PcrV, PcrH, PopB, and PopD proteins form injection
Injection of type III secretion factors
bridge for type III effectors
Outer membrane Siderophore receptors Provides iron for microbial growth and survival
Efflux pumps Remove antibiotics
Secretion systems
Elastase, lipase, phospholipases, chitin-binding Variety of proteolytic, lipolytic, and toxic factors; degrade
• Type II protein, exotoxin A, and others host immune effectors
Intoxicates cells (ExoS, ExoT); cytotoxic (ExoU); disrupts
• Type III ExoS, ExoT, ExoU, ExoY
actin cytoskeleton
Poorly characterized but found in animal studies to be
Cytoplasmic and membrane-associated proteins,
• Type VI needed for optimal virulence, particularly in
ATPases, lipoproteins, Hcp1 protein
chronic infection
Iron acquisition Pyoverdin, pyochelin, HasAP Scavenge iron from the host for bacterial use
Kill leukocytes, hemolysis of red cells, degrade host cell
Secreted toxins Hemolysins, rhamnolipid phospholipases
surface glycolipids
Secreted Produce reactive oxygen species: H2 O2 , O2 −
Pyocyanin, ferric pyochelin, HCN
oxidative factors Inflammatory, disrupts epithelial cell function
Quorum sensing LasR/LasI, RhlR/RhlI, PQS Biofilm formation, regulation of virulence factor secretion
ATPases = adenosine triphosphatases; PQS = Pseudomonas quinolone signal.
antibodies, and (4) specific to P. aeruginosa, are discussed below and should be strongly
considered as a part of any therapeutic antibody strategy.
Exotoxin A. Exotoxin A is the most potent virulence factor produced by most clinical
strains (88%) of P. aeruginosa [41]. Exotoxin A is a ribosylating enzyme that inhibits
protein synthesis and interferes with immune functions of the host and causes widespread
apoptosis [42]. The regulation of exotoxin A is not completely understood, although it is
thought to be upregulated for iron scavenging.43 However, it is known that exotoxin A is
secreted through the Type II Secretion System (T2SS, see Figure 3), making it a promising
target for therapeutic antibody development [43]. In several studies, exotoxin A antibodies
have provided protection to clinical P. aeruginosa infections, including in exotoxin A toxoid
vaccine trials [44].
Protease IV. Proteases are associated with the corneal damage seen with P. aeruginosa
keratitis and play an important role in the tissue damage seen with soft tissue P. aeruginosa
infections [45]. Protease IV, which acts to cleave or degrade host proteins such as im-
munoglobulins, complement, and fibrinogen, is a somewhat unique extracellular virulence
factor [46]; its expression and potency are induced by quorum sensing (see below) [47].
While host-derived antibodies to Protease IV fail to develop in acute infections, injection
of antibody–antigen complexes has been shown to develop strong, protective antibody
responses [48,49]. Alternatively, antibody inhibitors of Protease IV could be developed
as medications for P. aeruginosa infections. In one study, an antibody inhibitor showed
complete inhibition of the protease [46].
Lipase A (LipA). Lipase A is abundant and a major secreted protein of P. aeruginosa [50].
In fact, Lipase A is the main extracellular lipase of P. aeruginosa. LipA is transported across the
cell envelope by a type II secretion system, which is a two-step ATP-dependent process. It has
been shown that Lipase A binds to the extracellular polysaccharide, alginate, by electrostatic
interaction [50]. This interaction seems to localize the enzyme near the cell surface and is
thermo-stabilizing, which may be relevant for the growth and survival of biofilm resident
P. aeruginosa [50]. LipA is also an immunomodulator [51,52]. Therefore, therapies that include
Lipase A as a target would help decrease the establishment of infection and decrease virulence.
Phospholipase C. Phospholipase C (PLC), also known as lecithinase, is a common
class of enzymes that cleave exogenous phosphatidylcholine (PC) into fatty acids and
choline. P. aeruginosa uses the processed phospholipid products as an energy source.
P. aeruginosa has two types of PLC, hemolytic (PLCh) and nonhemolytic (PLCnh). The
hemolytic one seems to play a larger role in virulence [42]. It is hypothesized that PLCh
decreases oxidative burst activity in neutrophils, which are the primary cells responsible
for clearing P. aeruginosa from the lungs. In mouse models, PLCh has also been shown to
cause an increase in vascular permeability, end-organ damage, and death [53]. P. aeruginosa
strains with either disruptions or deletions in PLCh are less virulent than the wild-type
strain [53]. While commonly a membrane-bound protein, in P. aeruginosa infections, PLC is
a secreted toxin that plays a role in pathogenesis [54]. PLC’s ability to damage the host cell
membrane allows disseminated infection and wound colonization, indicating that PLC may
play an integral role in the establishment and maintenance of chronic wound infections [41].
Virulence factors expressed by P. aeruginosa isolates from chronic leg wounds include beta
hemolysins (92.3%), lipase (76.9%), and lecithinase (61.5%) [41]. Additionally, a study
of 123 environmental and clinical strains of P. aeruginosa also expressed beta hemolysins
(95.1%), lipase (100%), and lecithinase (100%), displaying high conservation of this class of
enzymes [55]. This high degree of conservation and known genetics (i.e., ExoT and AlgD,
coded for phospholipases and protease IV, respectively [41]), makes this a particularly
attractive target for therapeutic enzymes [53]. Antibodies to PLC have been detected early
and at high levels in many patients, but especially in CF patients with chronic P. aeruginosa
infections. The antibodies remain elevated throughout the course of infection and increase
with acute exacerbations [56]. The one particularly important caveat to targeting PLC for
therapeutic antibody development is that while PLCh is secreted, PLC may be sequestered
Antibiotics 2021, 10, 1530 9 of 31
in secreted outer membrane vesicles, providing only limited availability [57]. Nevertheless,
the potential of this class warrants further study.
LasA and LasB (Elastase A and B). LasA and LasB are two secreted proteases that
cleave immunoglobulins, inhibit cytokines, interfere with immune cell functions, and
increase the permeability of the tight junctions of the airway epithelium [58–65]. Both are
synthesized as proenzymes. LasA is secreted in its unprocessed form and then processed
extracellularly. LasA is known to enhance pseudomonal colonization and immune evasion
via enhanced syndecan-1, IL-6 receptor, CD14, and TNF-α shedding, and facilitates the
function of elastase [65]. LasA can also act on elastin but is limited to a few highly specific
amino acid sequences [66]. In contrast, LasB is a zinc metalloprotease that can cleave
proteins at multiple sites. LasB is a propeptide that is initially secreted and then partially
degraded extracellularly. LasB is able to degrade a wide range of host proteins, conferring
much more virulence when compared to LasA [45,66]. Part of this enhanced virulence is
also the ability of LasB to induce damage to host tissue and subvert immune responses. In
addition, LasB decreases the expression and activity of the CFTR ion channel in bronchial
epithelial cells and has been shown to have the ability to degrade IL-6 and trappin-2, which
are both important for antimicrobial defense [45]. LasB seems to exacerbate this weakened
system and cause increased morbidity and mortality for cystic fibrosis patients [45]. LasB
is prevalent and a major secreted protein in the secretome of the P. aeruginosa PA01 strain,
driving virulence in a large percent of CF patients [45]. LasB is secreted by the type II
secretion system (Figure 3) [45].
In addition to the central role of LasA and LasB in virulence, past studies of active
immunity indicate that antibody-based therapeutics might be particularly effective. Anti-
LasA and anti-elastase antibodies may decrease virulence by rendering P. aeruginosa more
vulnerable to host immune mechanisms or antibiotics. Vaccine candidates to LasB and LasA
were efficacious in preventing and decreasing the severity of pneumonia in minks, corneal
ulcers and lung infections in rats and burns in mice [67–70]. LasA and LasB may be secreted
in outer membrane vesicles and thus would have limited availability as drug targets [57].
Alkaline Protease (AprA). AprA, which is also a zinc metalloprotease [71] that has
activity and function similar to LasB, is a prevalent secreted protein of the P. aeruginosa
PA01 strain [71]. Its production is thought to be regulated not only by phosphatidylcholine,
but it appears that P. aeruginosa is also able to induce the production of alkaline protease
in conditions of limited inorganic phosphate [72], tagging it as potentially relevant target
to squelch virulence [73]. AprA is found to be active during an inflammatory phase of
infection and causes cellular necrosis and hemorrhage via increased vascular permeability
and proteolysis in infected wound sites. This activity is further expressed in septicemia,
in which proteolysis affects homeostatic mechanisms of plasma proteins [74]. Unlike
LasB, AprA is secreted as a part of the Type 1 secretion system which includes AprA, D,
E, and F. Unfortunately, there is some evidence to suggest that Alkaline Protease may
be sequestered in OMVs and thus may have limited availability [57]. Thus, AprX, a
caseinolytic extracellular protease, also secreted by T1SS, might serve as a good alternative
or supplementary target [75].
Caseinase. Caseinase is a major, soluble protease and virulence factor secreted by
P. aeruginosa that breaks down casein [41], although there is some evidence to suggest that
caseinase may be sequestered in OMVs after secretion, which may limit its utility as an
antibody drug target [57]. In isolated strains of P. aeruginosa, caseinase was expressed in
91.67% of chronic leg ulcers cultured [41]. Another study analyzed 123 clinical and environ-
mental P. aeruginosa strains and reported a 99.2% conservation of caseinase. Interestingly,
the clinical strains had considerably more proteolytic activity compared to environmental
strains [55]. In wounds, caseinase delays healing and contributes to chronic lesions by
limiting essential amino acids in the area [41]. Additionally, caseinase and other secreted
proteases aid in colonization, tissue damage, and immune evasion by P. aeruginosa [55].
Thus, therapies that include caseinase as a target would theoretically decrease the estab-
lishment of infection as well as the virulence of the strain.
Antibiotics 2021, 10, 1530 10 of 31
Figure
Figure 4.
4. Protein
Protein secretion
secretion systems
systems in
in P. aeruginosa described
P. aeruginosa described further
further in
in the
the text.
text.
PcrV:PcrG.
Type II (T2SS) PcrV and PcrG
Secretion are heterodimers
System. that aremajor
The T2SS secretes an integral part noted
toxins (e.g., of binding
abovethein
section complex
needle A, including LasA and
(NC)/T3SS LasB, type
apparatus IV protease,
(T3SA) of the T3SSandto exotoxin A) into
host cells. Theytheareextracellular
commonly
space during
found acutesecreted
in the main infections. Molecules
protein as partsecreted through of
of the secretome T2SS
thesecretions
P. aeruginosacause
PA01 a signifi-
strain
cant are
and number of the disease
anticipated pathologies
to be available associated with
to circulating P. aeruginosa
and secreted (IgAinfections
and IgM)[76]. XcpQ
antibody
and HxcQ are outer membrane proteins of the two major T2SSs
therapeutics. While PcrV’s role is not completely characterized, it (PcrV) seems to form a (see Figure 4), making
them accessible
scaffold at the tiptoofcirculating (e.g., IgGneedle
the T3SS injection and IgA) and secreted
[76,87,88]. PcrV and (IgA andare
PcrG IgM) therapeutic
found in 100%
antibodies.
of Unfortunately,
P. aeruginosa strains [89],as noted
while with
PcrV is the T1SS membrane
specifically found inproteins, these membrane
most P. aeruginosa strains
proteins have
associated withonly
poor limited characterization
clinical outcomes [90].of Intheir immunogenicity
addition, [80]. and structure
the PcrV sequence
Type III (T3SS)
are associated Secretionresistance
with antibiotic System. [90].The T3SS is the other
Vaccination major secretion
to produce mechanism
PcrV antibodies has
for toxins. More accurately, the T3SS injects molecules, commonly
been shown to be protective in mice infected with a lethal dose of virulent P. aeruginosa.DNA and toxins, into the
cytoplasm of the host cells [81]. These T3SS toxins play a role in
Passive immunization with anti-PcrV IgG has also been demonstrated to be protective in some localized infections,
including
animal the eye
models and lung
[91–99]. PcrV[82–84].
antibodies While the toxins to
are accessible arethenot secreted
humoral extracellularly
immune system, as in
many types of P. aeruginosa infections, antibodies
shown in clinical trials [92]. PcrG requires further study. to these toxins might be considered
for some
PcsF.indications.
PcsF is the needleThe hallmark
part of theof T3SS
needle is complex
the needle complex
(see Figure (NC)
4). Theormolecule
injectisome re-
(described below and in Figure 4). The T3SS is most often identified
mains poorly characterized, although the PcsF is highly conserved even between P. aeru- with Yersinia [76,81].
However,
ginosa andthe P. aeruginosa
Yersinia T3SSPcsF
[100]. Since injects numerous
is located exotoxins including
extracellularly, it should ExoU,S,T,Y,
represent MMP-12,
an avail-
and MMP-13 [85]. The injected
able target that should be pursued [100]. toxins from T3SS alter the host’s cell cycle, commonly
PoP B&D. PoPB and PoPD are part of the T3SS that forms a heterodimer on lipid
membranes, allowing for penetration of target cell membranes by assembling functional
translocons [101]. Their membrane location also makes them accessible to circulating and
secreted (IgA and IgM) antibodies [101]. PoP is active during an inflammatory phase of
Antibiotics 2021, 10, 1530 11 of 31
inducing apoptosis. The T3SS consists of a multimeric protein complex that is divided
into four major domains. Epitopes in each of the extracellular domains could serve as
drug targets to reduce bacterial associated morbidity. Other attempts to actively target the
T3SS with antibody therapies have yielded mixed results [86], with enough promise that
antibody therapy against T3SS, which in conjunction with T2SS is thought to significantly
contribute to bacterial virulence [76], should be pursued.
PcrV:PcrG. PcrV and PcrG are heterodimers that are an integral part of binding the
needle complex (NC)/T3SS apparatus (T3SA) of the T3SS to host cells. They are commonly
found in the main secreted protein as part of the secretome of the P. aeruginosa PA01 strain
and are anticipated to be available to circulating and secreted (IgA and IgM) antibody
therapeutics. While PcrV’s role is not completely characterized, it (PcrV) seems to form a
scaffold at the tip of the T3SS injection needle [76,87,88]. PcrV and PcrG are found in 100%
of P. aeruginosa strains [89], while PcrV is specifically found in most P. aeruginosa strains
associated with poor clinical outcomes [90]. In addition, the PcrV sequence and structure
are associated with antibiotic resistance [90]. Vaccination to produce PcrV antibodies has
been shown to be protective in mice infected with a lethal dose of virulent P. aeruginosa.
Passive immunization with anti-PcrV IgG has also been demonstrated to be protective in
animal models [91–99]. PcrV antibodies are accessible to the humoral immune system, as
shown in clinical trials [92]. PcrG requires further study.
PcsF. PcsF is the needle part of the needle complex (see Figure 4). The molecule remains
poorly characterized, although the PcsF is highly conserved even between P. aeruginosa
and Yersinia [100]. Since PcsF is located extracellularly, it should represent an available
target that should be pursued [100].
PoP B&D. PoPB and PoPD are part of the T3SS that forms a heterodimer on lipid
membranes, allowing for penetration of target cell membranes by assembling functional
translocons [101]. Their membrane location also makes them accessible to circulating and
secreted (IgA and IgM) antibodies [101]. PoP is active during an inflammatory phase of
infection. PopB and PopD are found in most P. aeruginosa strains associated with poor
clinical outcomes [102].
Type V (T5SS) secretion system. T5SS predominantly secretes virulence factors
and enzymes that support biofilm formation [103]. While the Type V secretion system
(T5SS) involves a two-step process: synthesis of a precursor molecule and a periplasmic
intermediate of the effector, it is considered the simplest secretion system [104].
Since they are autotransporters, the epitope of the antibody would need to target the
cleaved domain(s) of the transport protein. While EstA and LepA are potential targets
associated with T5SS, PlpD is currently more characterized and thus has more potential as
a drug target.
PlpD. PlpD is a phospholipase A1 enzyme in the patatin-like family that degrades
lipids, especially in membranes [104]. PlpD is composed of multiple domains including
a secreted domain that is fused to a transporter domain. Due to its high virulence and
availability, it makes a solid therapeutic target.
Type VI (T6SS) Secretion System. T6SSs are effector translocation systems that
resemble inverted bacteriophage-puncturing devices. Effectors of P. aeruginosa T6SS in-
clude Tse1-3, PldA, and PldB, well-known virulence factors [105]. Phospholipase D (PLD)
enzymes, including PldA and PldB, are enzymes that catalyze the hydrolysis of phosphodi-
ester bonds. In addition, T6SS machinery improves survival of P. aeruginosa by allowing
better delivery of toxins to neighboring organisms; suppressing nonpathogenic normal
flora may also help P. aeruginosa and translocate effector proteins directly into target host
cells [106]. Hence, T6SS, which also plays a role in biofilm formation, can be considered
a virulence factor of P. aeruginosa. T6SS consists of several protein components, namely
hexameric rings of hemolysin-coregulated protein (Hcp), Val-Gly repeat (Vgr) proteins,
and a PAAR protein. Hcp hexameric protein rings stack in vitro to form nanotubes that
resemble bacteriophage tail tubes while Vgr proteins are similar to the tail-spike puncturing
device of a phage. PAAR proteins are thought to aid in facilitating the puncture of target
Antibiotics 2021, 10, 1530 12 of 31
membranes [107]. Importantly, PAAR proteins as well as Hcp and Vgr complexes may
constitute a portion of the surface-exposed T6SS machine [106,107], making them potential
drug targets to reduce morbidity secondary to P. aeruginosa infection.
formation [115,116]. OdDHL inhibits naive T-Cell proliferation as well as subtype dif-
ferentiation. It acts as a quorum sensor signal molecule and inhibits IL-12 and TNF [117].
It also decreases antibody production at high concentrations and promotes IgE/IL-4 at
low concentrations. OdDHL also regulates Las gene expression, most notably LasR, and
upregulates IL-8 in corneal infections [115,116]. Additionally, it has been shown to inhibit
dendritic cell concentrations in a dose-dependent fashion. 3-oxo-C12-HSL inhibits PPAR
gamma functioning in host cells, leading to an active, expanding proinflammatory state
and bacterial swarming. Low-dose antibiotics can suppress the quorum sensing functions
of 3-oxo-C12-HSL; however, 3-oxo-C12-HSL can auto-induce Las systems, producing cy-
totoxic effects targeting macrophages and neutrophils via pro-apoptotic pathways. This
molecule also selectively regulates Nf-kB signaling, leading to decreased host TLR4 path-
way utilization to fight P. aeruginosa infections [118–121].
Evidence suggests that mice immunized with a carrier-conjugated 3-oxo-C12-HSL were
able to generate a protective humoral response. Thus, as with other QS molecules, antibody
generation, while challenging, is possible. Since 3-oxo-C12-HSL is secreted, it is available for
targeting and binding by circulating and secreted (IgA and IgM) antibodies [122].
Hydrogen cyanide (HCN). HCN production is an important mediator involved in
quorum sensing (QS). HCN-producing bacteria help to maintain cooperativity and eliminate
“cheating bacteria” [108]. Bacteria that participate in QS have increased resistance to HCN
intoxication and ROS damage than the mutant cheaters [123]. These cheaters threaten
cooperativity and thus stability of the P. aeruginosa bacterial population. HCN has been
detected in sputum cultures of P. aeruginosa-infected CF patients and P.aeruginosa-infected
burn cultures. Researchers postulate that HCN decreases pulmonary function, especially
in CF patients, by interfering with essential enzymes, such as superoxide dismutase, NO
synthase, cytochrome C oxidase, and others, disrupting aerobic respiration and cellular
immune functions [124]. In burn patients, HCN inhibits cytochrome c oxidase to decrease
metabolism at the site of infection [125]. Targeting HCN production may disrupt the
delicate nature of P. aeruginosa biofilms, helping to treat resistant infections [108,123].
To decrease HCN signaling, two targets are possible: (1) HCN, which is difficult
given the tiny size of the HCN molecule or (2) HCN synthase, a membrane-bound enzyme
that synthesizes HCN from glycine [125]. Targeting HCN synthase, which is a ubiquitous,
membrane-bound molecule, available to circulating and secreted (IgA and IgM) therapeutic
antibody delivery, may prove to be a viable strategy for combating QS.
Pyomelanin. Pyomelanin is a small molecule in the same family as melanin that is
secreted as a part of the P. aeruginosa QS system. Pyomelanin overproduction is a common
phenotype among patients with cystic fibrosis and urinary tract infections, giving colonies
a brown phenotype and heightened resistance to phagocytosis. Production of pyomelanin
is associated with an increased resistance to peroxide [126].
Since pyomelanin is a small molecule that is secreted, it is antibody accessible. How-
ever, synthesis of antibodies to pyomelanin may not be a viable strategy due to the difficulty
in production; nevertheless, if an antibody system could be developed against pyomelanin,
it may be effective based on the accessibility of the antigen [127].
Other candidate molecules. As more information is gathered, several other quorum-
sensing molecules may emerge as targets [128], including the Acyl Homoserine Lactones
(AHLs): OdDHL, ConA, and BHL which are produced by the majority of P. aeruginosa
strains. These molecules increase the organism’s virulence and have a wide array of
immunomodulatory effects. Generally, AHLs are modulated and expressed secondary to a
variety of quorum sensing signals. The variety of AHLs work in conjunction to divert the
immune response away from the P. aeruginosa organism [123,129]. AHLs suppress T-cell
growth and proliferation, particularly in CD4+ T-cells. They also promote Th2 over Th1
host immune responses. These molecules could serve as antibody-based drug targets.
Antibiotics 2021, 10, 1530 14 of 31
population [136]. These results highlight the potential of LecA as a drug target; however, LecB
requires further study to assess its potential value as a drug target.
Phosphatidylcholine (PC) Metabolism and Transporting Enzymes. Phosphatidyl-
choline (PC), a highly prevalent lipid found in lung surfactant, has been identified as
a nutrient source for P. aeruginosa [54]. To serve as a nutrient source, PC is cleaved by
P. aeruginosa PLC into fatty acids, glycerol-3-phosphate and glycerol. Numerous enzymes
then transport these metabolic products into the bacterial cell. Glycerol-3-phosphate trans-
porter (GlpT) and glycerol uptake facilitator protein (GlpF) are transmembrane proteins
involved in the uptake of glycerol-3-phosphate and glycerol, respectively [137]. Block-
ing the metabolism of PC (as previously discussed for PLC) and/or transport of these
degraded components of PC should result in decreased replicative potential and biofilm
development of P. aeruginosa. Therefore, these metabolites and their transporters pose
great targets for pAbs [54]. Notably, there are other key transporters that may also provide
effective targets. Two choline symporters, BetT1 and BetT2, as well as an ABC transporter,
CbcXWV, are involved in choline transport into the bacterium [138], Fatty acid transporters,
such as long-chain fatty acid translocase (FadL), are utilized for free fatty acid uptake
by P. aeruginosa [54,137]. Blocking any of these transporters may have a similar effect as
blocking GlpT and GlpF.
Multivalent Adhesion Molecule 7. MAM7 is a protein that binds to the host cells
during the early stages of infection. MAM7 binds with fibronectin and phosphatidic acid
of the host’s cell membrane. Hence, MAM7 expression in P. aeruginosa is necessary for
virulence. In a recent study of burn patients, topical application of polymeric microbeads
functionalized (covalently attached) with the adhesin MAM7 led to positive clinical out-
comes, including reduction in P. aeruginosa bacterial loads by decreasing the available
receptors for the bacteria to attach in the wound and thus preventing bacterial spread [139].
The MAM7 protein is outer membrane accessible and conserved in most P. aeruginosa
strains [139]; therefore, it may prove an effective therapeutic target.
OprE and OprF. OprE and OprF are major outer membrane proteins in P. aeruginosa
that are associated with virulence, including cellular adhesion, virulence protein secretions
via T3SS (e.g., ExoT and ExoS), and secretion of the quorum sensing-dependent virulence
factors pyocyanin, elastase, lectin PA-1L, and exotoxin A. OprE and OmpA, are important in
biofilm development. A mutation in the ompA gene resulted in a thinner exopolysaccharide
layer of the biofilm [140]. Other surface membrane proteins are also involved in biofilm
development. OprE and, additionally, OmpH, interact with OmpA to aid in biofilm
development. OprF also binds to IFNγ, thereby increasing virulence [140]. OprE and
OprF are also found in secreted outer membrane vesicles (OMVs) [141] and may be good
therapeutic targets based on their accessibility [142]. However, as noted with the secretion
system membrane proteins, the availability of these membrane proteins has only limited
immunogenic characteristics, which may limit the development of therapeutic antibody-
based treatments using traditional antibody technology. Nevertheless, the variety of
proteins involved in biofilm development allows for the development of a multifaceted
approach to P.aeruginosa antibiotic resistance These different biofilm components contribute
to it being a suitable drug target for future pharmaceutical studies [143]. Further study
is warranted.
Lipopolysaccharide Lipopolysaccharide (LPS) is a major component of the outer
membrane of Gram-negative bacteria. For P. aeruginosa, LPS is a key virulence factor and
stimulates an inflammatory response in the host. It contains three primary structural
domains: lipid-A, variable O-antigen, and the core oligosaccharide, which can further be
divided into the inner and outer core. The core oligosaccharides link the lipid-A domain,
which is embedded into the outer membrane with the O-antigen, which in turn extends
from the cell to interact with the host environment. Lipid-A can have a variable structure
with differing levels of virulence and binds to the TLR-4 receptor, which is essential for LPS
recognition via lipid-A, to stimulate the host’s innate immune system. The inflammatory
response of the host increases the synthesis of LPS binding protein (LBP). The response
Antibiotics 2021, 10, 1530 16 of 31
that follows the binding of TLR-4 is dependent on the level of acetylation of lipid-A, which
can be penta- or hexa-acetylated. In general, the hexa-acetylated form of lipid-A results
in a much more robust inflammatory response.TLR-4 can also mediate host resistance
to infection [144,145].
There are two types of LPS, smooth and rough. The presence of the O-chain determines
whether the strain is considered rough. Rough LPS strains that are unable to produce the
O-antigen are present in the lungs of CF patients. The smooth LPS isolates are responsible
for systemic P. aeruginosa infections [144]. There have been attempts to develop a vaccine
against LPS for P. aeruginosa. A conjugate vaccine was trialed on CF patients and showed
initial promise. However, after moving on to phase III trials, the vaccine did not produce a
strong enough immunological response [146]. Newer vaccines being trialed are attempting
to elicit a stronger response. With incidence of P. aeruginosa antibiotic resistance becoming
more prevalent, an effective vaccine would be a game changer in the fight against the
bacteria [144,145]. Again, generating an antibody (or antibodies) to LPS is a difficult task
as LPS is both a non-protein target and has variable regions; however, the payoff for such a
development would be substantial as LPS is found in all P. aeruginosa strains and potentially
virtually all Gram-negative bacteria.
Rhamnolipids (A, B, C, G, R). In addition to LPS, which is a hallmark of Gram-
negative bacteria, P. aeruginosa also produces glycolipids called rhamnolipids with a rham-
nose head group (glycosyl) and fatty acid tails. These membrane-bound glycolipids
provide surfactant properties. The production of rhamnolipids is variable based on the
quorum sensing that regulates Rhl gene expression. Rhamnolipids are found on the cell
surface, in biofilms, and excreted into the environment. In fact, rhamnolipids are also found
in the sputa of people with cystic fibrosis with P. aeruginosa infection. The molecules have a
role in causing respiratory cell lysis and ciliary dysfunction in these patients by removing
ATP-ase dynein arms from cilia [147]. While the function of rhamnolipids is speculative, it
includes the uptake of hydrophobic substrates, improved motility, and mediating biofilm
growth. Rhamnolipids are particularly important in modulating the swarming motility
of colonies, which may serve to perpetuate bacterial survival and virulence. Reducing
P. aeruginosa cell tension and improving the organism’s adherence to host cells may be
inextricably connected to the rhamnolipid’s ability to modulate the bacteria’s swarming
behavior. As a multi-purpose molecule, targeting rhamnolipids may carry biological and
therapeutic benefits, but may also incur a host of side effects [148]. Nevertheless, in a drug
targeting context, the most relevant functional aspect of rhamnolipid may be its ability to
disrupt epithelial cell tight junctions, as evidenced by the presence of rhamnolipids in both
lung and corneal infections [149,150].
As noted above with LPS, the development of antibodies to rhamnolipids, as is the
case with many non-protein antibodies, is challenging for numerous reasons; however,
antibodies have been previously developed [151]. Rhamnose-binding lectins may also be
an option. Since rhamnolipids are membrane-bound, they have at least some epitopes
available for antibody or lectin therapy delivery. Since rhamnolipids are ubiquitous,
available, and potentially pathologic, any therapeutic strategy should include this target.
Psl EPS/Mucoid Exopolysaccharide (MEP). Psl exopolysaccharide (EPS/MEP) is a
major component of the biofilm produced by P. aeruginosa. It is produced by several
enzymes with increasing expression in sugar-rich environments. Psl EPS is composed
mainly of galactose and mannose and contributes to the matrix of the biofilm by initiating
and strengthening biofilm adhesions. The biofilm decreases antibiotic penetration into
P. aeruginosa allowing survival and propagation of antimicrobial-resistant strains [152]. As
with rhamnolipids and LPS, EPS is a valuable target, but it is difficult to generate antibodies
for numerous reasons. Nevertheless, antibodies have been previously developed. CF
patients often generate anti-EPS antibodies; however, these antibodies are non-opsonizing
and non-neutralizing [153]. Using a FAb (antigen-binding fragment of an antibody) and
recombinant opsonizing Fc (tail region of an antibody that interacts with cell surface
receptors) to engineer synthetic antibodies could improve efficacy in order to clear the
Antibiotics 2021, 10, 1530 17 of 31
infection [154]. Alternatively, as with other carbohydrate targets, lectins may also be an
option. Since EPSs are an integral membrane component, they are available to circulating
and secreted (IgA and IgM) antibody or lectin therapeutic delivery. Since EPS is ubiquitous,
available, and potentially pathologic, any therapeutic strategy could include this target.
Alginate. Alginate is another exopolysaccharide produced by P. aeruginosa. It spans
the organism’s inner and outer membrane. Alginate enhances cell to cell adhesions and
cell to host adhesions. These adhesions are protective for the organism; they increase
resistance to the host immune system [155]. P. aeruginosa evades the host immune system
during chronic disease by decreasing its virulence so as to not provoke an acute immune
reaction. Alginate is produced in large quantities during chronic infections. Inhibition of
macrophage clearance and efferocytosis have been observed, but the mechanism of alginate
in this process is still unknown [156]. Again, as with other lipids/carbohydrates discussed
in this section, alginate is a difficult, but potentially valuable, target.
Secreted outer membrane vesicles (OMVs). OMVs are ubiquitously generated and
secreted by P. aeruginosa during all stages of the bacteria’s life cycle [141,157], particularly
under conditions of stress. Growing experimental evidence suggests that OMVs are se-
creted with numerous virulence factors, antibiotic resistance molecules, and quorum sensing
molecules, including hemolysin, phospholipase C, elastase, and alkaline phosphatase,
antimicrobial quinolines, adhesions, CIF, and beta-lactamase into the host cells [158–161].
Additionally, these vesicles carry virulence factors that can cause cytotoxicity, increase
adherence, and carry factors such as cystic fibrosis transmembrane conductance regulator
inhibitory factor [141]. OMVs can then fuse with host cell membranes and alter their func-
tion, resulting in the breakdown of the host’s epithelial barrier cells, which can ultimately
facilitate the invasion of P. aeruginosa. Antibody therapies for these targets could include
several approaches. First, antibodies to CIF could be delivered inside the vesicle that fuses
to the secreted outer membrane vesicles. Second, antibodies to the OMV itself could be
developed with an opsonization effector function to eliminate the OMV entirely. More
study into OMVs as either a drug target or natural drug delivery system is warranted.
CbpD. CbpD is one of the conserved outer membrane vesicle proteins found in
the majority of studied strains of P. aeruginosa. Due to its conservative expression and
extracellular presence, CbpD may be a possible target of immunotherapy against the outer
membrane vesicles and the virulence factors, which they carry [162].
been varying results on the effectiveness of a vaccine targeting the P. aeruginosa flagellum.
Rabbits were passively immunized with antibodies against the monomeric flagella protein
and survival studies showed the antibodies provided little protection. However, antibodies
targeting polymeric flagella showed promising results with an 87% survival rate following
the P. aeruginosa challenge. Although anti-flagella antibodies against the PAK and PA01
strains showed only modest protection, flagella proteins appear to be a promising emerging
drug target [168].
3.8. Immunomodulators
Immunomodulators use regulatory molecules to adjust the immune response, includ-
ing inducing, attenuating, and amplifying the host immune response. P. aeruginosa uses
several mechanisms to modulate the immune system to reduce effective host immune
response, but P. aeruginosa also upregulates the immune response to fight competitors
such as S. aureus. For example, P. aeruginosa increases IL-8 production and in response,
S. aureus dampens Toll-like receptor (TLR1/TLR2)-mediated activation of the NF-κB path-
way [179]. As noted earlier, P. aeruginosa uses LasA to inhibit competing S. aureus. Here, a
few immunomodulators are highlighted as targets during a P. aeruginosa infection.
Lipoxygenase (LoxA). Lipoxygenases (LOXs) are extracellular, lipid-oxidizing enzymes
that have potent immunoregulatory properties in their hosts [180,181]. In P. aeruginosa, the
lipoxygenase LoxA oxidizes polyunsaturated fats, resulting in the expression of bioactive
Antibiotics 2021, 10, 1530 19 of 31
lipid mediators and suppression of chemotactic molecules [182]. With greater than 90%
conservation across P. aeruginosa strains, leukotrienes, a product of LoxA, are secreted
to balance lipoxins and resolvins. LoxA also activates host ferroptosis, resulting in host
cell death and inflammation. LoxA increases LXA4 along with other LOX expressions,
leading to an increase in neutrophil chemotaxis and pro-inflammatory signaling [183].
Evidence from preclinical animal studies shows that P. aeruginosa clinical isolates secrete
LoxA, indicating modulation of the host immune response during acute pneumonia [182].
However, LoxA decreases in expression after 24 h of lung infection and has decreased
expression in chronic infections. This indicates that LoxA is a significant pro-inflammatory
and bacterial invasion mediator in acute infections, while losing this effect when lung
infections become chronic. Thus, targeting LoxA during acute infection could help increase
the host immune response. Additionally, upregulation of CCR5, a receptor on white blood
cells for immune system chemokines, occurs after exposure of lung tissues to Lox through
unknown mechanisms. CCR5 acts as a chemokine receptor as well as a chemotactic agent,
resulting in increased bacterial invasion [182]. Since LoxA is accessible to both circulating
and secreted (IgA and IgM) antibodies, it may prove to be a good target for therapeutic
antibody development and delivery therapy.
Leukocidin. Leukocidin is a cytotoxin of P. aeruginosa that damages granulocytes
and lymphocytes by forming a beta-barrel pore in cell membranes, thereby inhibiting
essential bactericidal and phagocytic immune functions [184,185]. Leukocidin has long
been known as a common, secreted virulence factor in P. aeruginosa. Targeting Leukocidin,
which is accessible, ubiquitous, and pathogenic, could have direct influences on the course
of P. aeruginosa infection and could help increase the host immune response.
4. Antibodies as Therapeutics
As antibiotic resistance continues to increase throughout a wide spectrum of microbial
infections, new and innovative approaches to treating these infections must be sought.
The development of antibodies to the relevant bacterial targets outlined above and in
Table 1 may be the next step in combating antimicrobial resistance. Therapeutic antibodies
work by activating and modulating our own host effector mechanisms including direct
neutralization of toxins and pathogens, activation of the complement pathway, activation of
neutrophil and macrophage opsonophagocytosis, activation of natural killer cells, enhance-
ment of antigen presentation from dendritic cells to T cells and follicular dendritic cells to B
cells, and degranulation of mast cells, eosinophils, and basophils. Additionally, Fc receptors
that correspond to different classes of antibodies can activate the complement pathway,
induce innate immune responses, and enhance natural adaptive immunity, providing a
multi-faceted strategy to address disease [186].
Therapeutic monoclonal antibodies (mAbs) have emerged as a tour de force in the
drug market and are projected to capture a rising percentage of the worldwide drug
market—a trend that reflects increased prescription use of existing therapeutic mAbs and
a large number (~50) of new therapeutic mAb drugs approved for use [187]. Currently,
mAbs have been developed to treat a broad array of clinical conditions including cancer,
autoimmune diseases, transplants, infectious disease, and toxin neutralization [188].
In contrast to mAbs, polyclonal antibodies (pAbs) have multiple epitope binding sites,
thereby allowing greater coverage of neutralizing antigens. Much like our native immune
system, pAbs are produced as a collection of antibodies from multiple B cell lineages,
thus producing many different sites and affinities for the same antigen. Having multiple
epitope binding sites allows for greater neutralization options and less opportunities for
pathogens to develop escape mutants [189]. By harboring the ability to work at a wide
number of sites in microbial pathogenesis, polyclonal antibodies have the potential to curb
or slow the development of multidrug-resistant organisms and fill the gaps in treatment
left by antibiotics and vaccines. Passive polyclonal antibodies have been used to treat
diseases for over 100 years with the oldest being patient- and blood-derived products
(often “convalescent sera”) or intravenous immunoglobulins (IVIG) [190]. Additionally,
Antibiotics 2021, 10, 1530 20 of 31
more modern pAbs are currently used as antitoxins and antivenoms and are an effective
treatment post-infection or post-exposure for botulism, varicella, vaccinia, rabies, CMV,
hepatitis B, and tetanus [188]. This is not a new strategy, but merely a re-energized approach
to treating bacterial pathogenesis.
In an emerging appreciation of rational design for new therapeutic options, combi-
nations of mAbs with defined correlates of protection are driving an increasing number
of investigations into combination therapies, especially with a focus on broad effector
mechanisms of actions beyond just simple binding. This strategy has been useful in recent
viral outbreaks, where multiclonal cocktails, or convalescent sera (i.e., polyclonal) from
recovered patients, have been used to treat diseases [189]. Engineering combination ther-
apies with improved effector functions, specificity, affinity, and glycosylation generates
a stronger and more diverse immune response. Moreover, combination therapies also
generate a much higher barrier for pathogens to overcome; in other words, the pathogens
cannot easily evolve to circumvent the treatment [189].
Combinatorial Therapy
Recently, it has been shown that antibodies and antibiotics can act concomitantly
or even synergistically against pathogens. Several studies have shown that exposure to
antibiotic therapy alters the expression of secreted factors, cell surface proteins, and other
cellular products that may be viable immunotargets [190]. These altered levels of expres-
sion can change and potentially enhance the innate and humoral immune responses to
pathogens—namely through increased antigen exposure, increased protein secretion, and
potentially decreased virulence of pathogens [190]. Inspired by these same principles, com-
bination or conjugate antibiotic/antibody therapeutic strategies, particularly those based
on polyclonal antibodies, could be designed to capitalize on these same altered expression
levels to enhance therapeutic efficacy and combat resistance. Below is a non-exhaustive
look into the evidence demonstrating how combination antibiotic/antibody therapy can
have a synergistic effect and, in some cases, potentiate the antimicrobial response.
Several clinical isolates of Streptococcus pneumoniae have been shown to, when in the
presence of penicillins or cephalosporins, become more reactive to opsonization by the
innate immune response; acute phase reactants, such as c-reactive protein and serum
amyloid P, more efficiently bind cellular antigens and clear infection quicker than when
not in the presence of these antibiotics [190]. By examining the synergistic activity be-
tween antimicrobial drugs and innate immune responses in vivo, it can by deduced that
combinations between antimicrobial and antibody therapy will likely work in a similar
synergistic fashion.
Similar to making Streptococcus pneumoniae more readily opsonized, penicillins,
cephalosporins, and gentamicin have all been shown to alter gene expression and tran-
scription in Staphylococcus aureus, leading to a change in the molecular structure of the
cell walls of the organisms [191]. Surprisingly, changes in the expression of virulence
factors in S. aureus in response to antibiotic therapy may actually improve exposure to
cellular products targeted by polyclonal antibody therapies. Using this observation as a
foundation, further work is underway to characterize the response of organisms to spe-
cific antimicrobial therapies, allowing polyclonal antibodies to be tailored to the expected
upregulation of virulence factors. In 2015, Lehar et al. utilized rifamycin conjugated
to monoclonal antibodies against wall-teichoic acids (cell wall peptidoglycans) to elim-
inate residual methicillin-resistant S. aureus infections [191]. These antibiotic–antibody
conjugates effectively bound S. aureus cell walls allowing rifamycin to be taken up by
phagolysosomes and exert its antimicrobial effect intracellularly, showing improved eradi-
cation rates compared to Vancomycin treatment alone [192]. Such an effect was confirmed
in a recent in vivo study.
A monoclonal antibody to PcrV (in P. aeruginosa) was used in combination with either
ciprofloxacin, tobramycin, or ceftazidime to improve survival rates in mice, noting that the
effect was more pronounced in more virulent strains of P. aeruginosa [192]. Protecting the
Antibiotics 2021, 10, 1530 21 of 31
lung against the cytotoxic effects of exotoxin in addition to amplifying the antimicrobial
effects of the antibiotics highlights the value of antibiotic–antibody conjugate therapy and
punctuates the need for further research into the human applications of these treatments.
5. Discussion
Therapeutic antibodies are highly specific with long half-lives and minimal dosing
compared to other drug treatments [193]. Currently, there are 79 US FDA-approved mono-
clonal antibodies in use and well over 500 currently being studied in clinical trials [193].
Most therapeutic antibodies target cancer, autoimmune diseases, or prevent transplant
rejection, but their use in other disease realms is gaining momentum. Currently, there are
five approved infectious disease monoclonals: Bezlotoxumab for prevention of recurrent
Clostridiodes difficile, Ibalizumab for drug-resistant HIV, Palivizumab for prevention of
respiratory syncytial virus, and Raxibacumab and Obiltoxaximab for inhalational anthrax,
and casirivamab and imdevimab for COVID-19 [194].
New therapies and treatment options must be sought for P. aeruginosa, a highly prevalent
and exceedingly antibiotic-resistant microorganism. Patients with the highest risk of infection
include those with compromised immunity, seen with chronic burns, chronic wounds, and
HIV/AIDS patients. Those with deficient bacterial clearance mechanisms, as seen in cystic
fibrosis, COPD, and ventilator-dependent patients [195], are also particularly susceptible
to P. aeruginosa. P. aeruginosa’s widely varied environmental niches, from respiratory tract
infections, skin, and soft tissue infections, and even septicemia make treatment especially
challenging. Additionally, P. aeruginosa creates seemingly impenetrable biofilms, which are
especially prevalent on implanted and indwelling devices, such as catheters, endotracheal
tubes, and prostheses. These biofilms create a plethora of challenges for the host innate and
adaptive immunity as well as antimicrobials [92]. The most daunting challenge, however,
may be the ability of P. aeruginosa to modulate host immune responses.
As noted earlier, multidrug-resistant pathogens present an emergent, serious pub-
lic health threat at all levels. While we have detailed many of the potential targets of
P. aeruginosa, many other emerging infections are multipathogenic, multidrug-resistant,
and even more deadly. With poly- and oligoclonal mixtures of therapeutic antibodies,
increasing levels of efficacy can be reached by adjusting individual antibodies within
the mixture for specific or broad pathogenic threats. The oligomixture can also have
prophylactic applications with adjustable dosing. Further, oligomixtures and antibiotics
could be used concomitantly and potentially synergistically against individual or multiple
pathogens. While vaccination is a good option, oligomixtures have significant advantages
and offer a strong alternative to treat multidrug resistance pathogens. Most notable is the
ability to neutralize identified, virulent targets without the inherent variability in response
to vaccination.
The effector function of an antibody plays a critical role in pathogen neutralization.
With an oligomixture, the role of effector function can be engineered (see Figure 5). This is
especially true when compared to a vaccine in which effector function is merely a function
of genetic and/or environmental chance. With oligomixtures, the effector function options
could be optimized based on any number of factors, including genetics. Effector functions
could be standardized for the entire mixture or diversified to allow different parts of the
immune system to enter the fight. The isotypes and thus the effector functions of the
oligomixture could be highly dependent on the environment. For example, IgA could be
the most efficacious isotype for intestinal and endothelial pathogenic indications whereas
IgG isotypes would likely be most efficacious in sepsis indications.
Antibiotics 2021, 10, x FOR PEER REVIEW 23 of 33
Effectorfunction
Figure5.5.Effector
Figure functionor
ormechanisms
mechanismsof
ofkilling
killingby
byantibodies.
antibodies.
P. aeruginosa, like many other bacteria, continues to and will continue to find ways to
subvert the efficacy of antibiotics. The immune system has evolved to attack microbes on
multiple fronts, but P. aeruginosa likewise evolves counterattacks, allowing it to colonize
and infect hosts. Engineering combination antibody therapies with numerous targets as
presented here would be the best option currently available to improve therapeutic efficacy
and reduce the opportunity for resistance development. As the P. aeruginosa genome is
characterized or evolves, the combination of antibodies can be adapted and optimized.
Most importantly, with the improved engineering of antibodies and characterization of
the human genome, the engineering of more efficacious antibody technologies for diverse
indications can also evolve, or even become personalized, just as P. aeruginosa evolves.
Author Contributions: Conceptualization, B.D.B., M.S. and F.D.T.; validation, J.M.S. and A.E.B.;
formal analysis, M.S., B.D.B., F.D.T. and J.M.S.; investigation, C.S.R., W.L.W., A.G.K., A.P.Q. and
L.L.P.; resources, C.S.R., W.L.W., A.G.K., A.P.Q. and L.L.P.; data curation, C.S.R., W.L.W., A.G.K.,
K.M.C. and L.L.P.; writing—original draft preparation, C.S.R., W.L.W., A.G.K., A.P.Q., K.M.C. and
L.L.P.; writing—review and editing, C.S.R., W.L.W., A.G.K., L.L.P., J.M.S. and A.P.Q.; supervision,
J.M.S., B.D.B. and F.D.T.; project administration, M.S. and B.D.B. All authors have read and agreed to
the published version of the manuscript.
Funding: This research received no external funding.
Institutional Review Board Statement: Not applicable.
Informed Consent Statement: Not applicable.
Data Availability Statement: Data sharing not applicable.
Conflicts of Interest: The authors declare no conflict of interest.
Abbreviations
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