Chromosomes: Magdalena F. Natividad, PHD Dean, School of Medical Lab Science Feu-Nrmf

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CHROMOSOMES

Magdalena F. Natividad, PhD


Dean, School of Medical Lab Science
FEU-NRMF
Intended Learning Outcomes (ILO)
At the end of this lecture, the student is able to:
1. Explain the packing of the chromosome.
2. Describe the composition of a chromosome including the
chromosome map.
3. Characterize the human chromosomes as to:
a. Number
b. Types based on centromere location
4. Discuss differences between the X and Y chromosomes
5. Explain the importance of X-inactivation.
Chromosome
• A macromolecule that carries genes.
• Composed of DNA, except for some viruses which contain
RNA.

• The chromosome is long, thin, and very fragile that needs


to be packaged to avoid breaking
The Cell Cycle
• Interphase
– G0
– G1
INTERPHASE: – S phase
– G2
• Mitosis

Biological Science, a Molecular Approach.


BSCS Blue Version. Heath and Company, 1996.
Chromosome Composition
• Each G1 chromosome = single double-
stranded DNA molecule
– monad
– chromatid
• Associated with
– histones (eukaryotes only)
• Histones are proteins rich in (+) charged
lysine and arginine residues
• bind to (-) charged DNA PO4
– Non-histone proteins – Transcription
factors (TF)
• TF- regulate which part of the DNA will be
transcribed.
• At metaphase = 2 sister chromatids or
dyad
Chromosome Packing
The lowest level is the nucleosome, consisting of
150 bp of DNA wrapped 1 3/4 times around a nucleosome
core of 8 histone proteins. Nucleosomes form a
string of beads.

The nucleosomes coil up into a 30-nm


chromatin fiber. This level of packaging
exists even during interphase.

During cell division, chromatin fibers are


attached in loops of variable size to a
protein scaffold.

Further coiling gives the compact structures


seen in metaphase.

Image Source: Nature 421, 448-453 (23 January 2003)


Chromosome Homologs

• Homologous pair

• Sister chromatids
o dyad – 2 sister chromatids

o genetically identical

• Non-sister chromatids
– genetically non-identical
Chromosome Nomenclature
• p (petit)
• q (queue)
• ‘cen’ – divides the chromosome into 2
arms
• ‘ter’ – has a repeated sequence of
TTAGGG

• Regions: labeled p1, p2, p3 etc., and q1,


q2, q3, etc., counting outwards from the
centromere.

• Regions are divided into


– bands labeled p11 (one-one, not eleven!), p12,
p13, etc.,
– sub-bands labeled p11.1, p11.2, etc.,
– sub-sub-bands e.g. p11.21, p11.22, etc.
An ideogram – chromosome map
Erratum p. 31
Chromosome Nomenclature

• Proximal 7q - means the segment of the


long arm of chromosome 7 that is closest to
the centromere

• Distal 7p - means the portion of the short


arm of chromosome 7 that is most distant
from the centromere, and therefore closest to
the telomere

An idiogram
Four major classes of chromosomes based
on centromere location
CHROMOSOMES

Chromosomes with satellite (has secondary


constriction – do not stain)
• Chromosomes 13, 14, 15, 21, 22

• All acrocentric

• May be used for identification


Chromosome Numbers (Human)
• Somatic cells – contain a set of 46
chromosomes
– 44 autosomes + 2 sex
chromosomes
– Diploid (2n) = 2 sets

• Sex cells – contain half the number


of chromosomes as somatic cells
– Gametes (sperm or egg cells)
– 22 autosomes plus 1 sex
chromosome
– Haploid (n) = 1 set

Karyogram
Sex Chromosomes
• Male – X, Y
• Female – X, X

• What is the sex of the offspring if the


X-containing sperm fertilizes an egg?
X CHROMOSOME
• 900 genes
• Only a few determine sex characteristics
• Most of the genes have no counterpart in the
Y chromosome
• Each gene (even if recessive in females) will
be expressed in males
• A gene recessive in females will be
expressed in male offspring. True or
False?
• The inherited X genes are described as
sex-linked or X-linked
X-linked genes (recessive)
Example: mutation in clotting factor VIII gene causes
hemophilia A (a bleeding disease)
• Clotting factor VIII – involved in clotting of blood
• Female – two copies of the gene (diploid)
• Male – only one copy of the gene (haploid)
• If mutation occurs in females:
– H is normal; h is mutant
– may be heterozygous (Hh) or homozygous (hh)
– If heterozygous (Hh) – disease will not manifest
– If homozygous (hh) – disease manifests (uncommon)
• If mutation occurs in males: (h)
– Always manifest the disease because there is only one
copy of h gene
X-linked genes (dominant)
Example: mutation in familial mental retardation-1
(FMR-1) gene that causes Fragile X syndrome

• If mutation occurs in females: (f is normal; F is


mutant)
– Even if heterozygous (Ff) - disease manifests
- Homozygous (ff) - normal
- Homozygous mutation (FF) disease

• If mutation occurs in males: (F)


– Always manifest the disease because there is only one
copy of F gene
o Smaller than X
Y chromosome o Fewer genes (55)
o Most are directly involved in male fertility
o e.g., mutations cause azoospermia
o SRY (sex-determining region of Y)
o The testis determining factor
o External and internal male genitalia
o Few traits are Y-linked and Y-linked
diseases are rare
o Pseudoautosomal regions (PAR)
o PAR 1 and PAR 2
o contain autosomal genes homologous
to sequences in the X chromosome
o Essential for X and Y pairing, and cross-
over during meiosis.
X-inactivation (Lyonization)
• Females inherit 2 copies of every
gene on the X chromosome,
whereas males usually inherit only
one.
• Are both copies of the genes
expressed in females?
Father’s X
• What is lethal gene dosage? X-
– The presence of double dose of gene inactivation Mother’s X

products, which may have lethal


consequence Cell division

• What is Barr body? Barr bodies


• How does X-inactivation occur? Figure 2.7 The Barr body.
X-inactivation
• At what stage of development does X-
inactivation occur?

• At what stage of the cell cycle is the Barr body


seen?

• Which X chromosome is inactivated? From


father or from mother?

• In case of X-linked diseases


– for unexplained reasons, it is found that the X
chromosome which carries the defective gene is
usually inactivated.
– If a female inherits a gene that causes an X-linked
disease, the other gene copy being normal, it is the
abnormal gene that is inactivated
X-inactivation
Mosaicism is a condition in which different
cells of the body of a person have
different genetic composition. This
occurs when mutations occur in
different tissues at different stages of
developments
– Mosaicism may also involve autosomes

Sex-linked Mosaicism: to whom will this


most likely occur, male or female?
Answer: female (males have only one X)
X-inactivation
Example : Calico Cat
• fur color gene is X-linked
• Brownish-black (dominant allele)
• Yellow-orange (recessive allele)
• A female cat heterozygous for this gene
has patches of each color, forming a
tortoise shell pattern that arises from
different cells expressing either of the two
alleles.
The earlier the inactivation, the larger
the patches, because more cell
divisions can occur after the event,
producing more daughter cells
X-inactivation

Hemizygous – a condition when only one allele of a


pair is present
– Usually applied to genes in the X chromosome in males

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