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Alphacoronavirus

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Alphacorona
virus

Porcine
epidemic
diarrhea
virus  genom
e and virion
structure

Virus
classification

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Subgenera
and species

See text

Alphacoronaviruses  (Alpha-CoV) are members of the first of the four genera


(Alpha-,  Beta-,  Gamma-, and  Delta-) of  coronaviruses. They are  positive-sense,
single-stranded  RNA viruses  that infect both humans and  mammals. They have
spherical virions with club-shaped  surface projections  and a  viral envelope.

Alphacoronaviruses are in the subfamily  Orthocoronavirinae  of the


family  Coronaviridae. Both the  Alpha- and  Betacoronavirus  lineages descend from
the  bat viral gene pool.[1][2][3]  Alphacoronaviruses were previously known as
"phylogroup  1 coronaviruses".

Etymology

The name alphacoronavirus is derived from Ancient Greek ἄλφα (álpha, "the first
letter of the Greek alphabet"), and κορώνη (korṓnē, “garland, wreath”), meaning
crown, which describes the appearance of the surface projections seen under
electron microscopy that resemble a solar corona.[4]

Structure

The virion is enveloped and spherical measuring 120–160 nm in diameter and a core
shell of about 65 nm. Glycoproteins and trimers form large surface projections which
create the appearance of solar corona. This genus, like other coronaviruses, has a
spike protein with a type II fusion machine (S2) and a receptor-binding domain (S1). It
assembles into a trimer. Unlike beta- and gammacoronaviruses, this protein is not
cleaved into two halves.[5]

Genome

Genetic relationships between the different feline coronaviruses (FCov) and canine
coronaviruses (CCoV) genotypes. Recombination at arrows.[6]

The genome is positive-sense, single-stranded RNA with a length of 27 to 29 kilobases


and a 3’-polyA tail. Two large, overlapping ORFs at the 5'-end of the genome encode
the major non-structural proteins expressed as a fusion protein by ribosomal
frameshift. These include regions with protease, helicase and RNA polymerase motifs.
There are seven other genes downstream which encode structural proteins. These are
expressed from a 3'-coterminal nested set of subgenomic mRNAs.

Recombination

Both types of Alphacoronavirus 1, feline coronavirus (FCoV) and canine coronavirus


(CCoV), are known to exist in two serotypes. Serotype II targets Aminopeptidase N,
while the receptor for Serotype I is unknown. The difference is due to a different spike
protein.[7] There is a common ancestor for FCoV and CCoV. This ancestor gradually
evolved into FCoV I and CCoV I. An S protein from an unknown virus was recombined
into the ancestor and gave rise to CCoV II. CCoV II once again recombined with FCoV
to create FCoV II. CCoV II gradually evolved into TGEV. A spike deletion in TGEV
creates PRCV. All these viruses are sorted into the subgenus Tegacovirus.[7]

Classification

Phylogentic tree of the genus Alphacoronaviruses with host animals indicated on the
right hand side.

The following subgenera and species are recognized:[8]

Colacovirus

Bat coronavirus CDPHE15

Decacovirus

Bat coronavirus HKU10

Rhinolophus ferrumequinum alphacoronavirus HuB-2013

Duvinacovirus

Human coronavirus 229E

Luchacovirus

Lucheng Rn rat coronavirus

Coronavirus

H1N1 virus

Types[show]

Vaccines[show]

Epidemics[show]

Outbreaks[show]

See also[show]

vte

Minacovirus
Mink coronavirus 1

Ferret coronavirus

Minunacovirus

Miniopterus bat coronavirus 1

Miniopterus bat coronavirus HKU8

Myotacovirus

Myotis ricketti alphacoronavirus Sax-2011

Nyctacovirus

Nyctalus velutinus alphacoronavirus SC-2013

Pipistrellus kuhlii coronavirus 3398

Pedacovirus

Porcine epidemic diarrhea virus

Scotophilus bat coronavirus 512

Rhinacovirus

Rhinolophus bat coronavirus HKU2

Setracovirus

Human coronavirus NL63

NL63-related bat coronavirus strain BtKYNL63-9b

Soracovirus

Sorex araneus coronavirus T14

Sunacovirus

Suncus murinus coronavirus X74

Tegacovirus

Alphacoronavirus 1

Canine coronavirus

Feline coronavirus
Transmissible gastroenteritis coronavirus

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