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Epidemiology
Pneumocystis pneumonia (PCP) is caused by Pneumocystis jirovecii, a ubiquitous fungus. The taxonomy of
the organism has been changed; Pneumocystis carinii now refers only to the Pneumocystis that infects rats,
and P. jirovecii refers to the distinct species that infects humans. However, the abbreviation PCP is still used
to designate Pneumocystis pneumonia. Initial infection with P. jirovecii usually occurs in early childhood;
two-thirds of healthy children have antibodies to P. jirovecii by age 2 years to 4 years.1
Rodent studies and case clusters in immunosuppressed patients suggest that Pneumocystis spreads by
the airborne route. Disease probably occurs by new acquisition of infection and by reactivation of latent
infection.2-11 Before the widespread use of PCP prophylaxis and antiretroviral therapy (ART), PCP occurred
in 70% to 80% of patients with AIDS;12 the course of treated PCP was associated with a 20% to 40%
mortality rate in individuals with profound immunosuppression. Approximately 90% of PCP cases occurred
in patients with CD4 T lymphocyte (CD4) cell counts <200 cells/mm3. Other factors associated with a higher
risk of PCP in the pre-ART era included CD4 cell percentage <14%, previous episodes of PCP, oral thrush,
recurrent bacterial pneumonia, unintentional weight loss, and higher plasma HIV RNA levels.13,14
The incidence of PCP has declined substantially with widespread use of PCP prophylaxis and ART; recent
incidence among patients with AIDS in Western Europe and the United States is <1 case per 100 person-
years.15-17 Most cases of PCP now occur in patients who are unaware of their HIV infection or are not
receiving ongoing care for HIV,18 and in those with advanced immunosuppression (i.e., CD4 counts <100
cells/mm3).19
Clinical Manifestations
In patients with HIV, the most common manifestations of PCP are subacute onset of progressive dyspnea,
fever, non-productive cough, and chest discomfort that worsens within days to weeks. The fulminant
pneumonia observed in patients who do not have HIV is less common among patients with HIV.20,21
In mild cases, pulmonary examination while the patient is at rest usually is normal. With exertion, tachypnea,
tachycardia, and diffuse dry (cellophane) rales may be observed.21 Oral thrush is a common co infection.
Fever is apparent in most cases and may be the predominant symptom in some patients. Extrapulmonary
disease is rare but can occur in any organ and has been associated with use of aerosolized pentamidine
prophylaxis.22
Hypoxemia, the most characteristic laboratory abnormality, can range from mild (room air arterial oxygen
[PO2] ≥70 mm Hg or alveolar-arterial PO2 gradient [A-a] DO2 <35 mm Hg) to moderate ([A-a] DO2 ≥35
to <45 mm Hg) to severe ([A-a] DO2 ≥45 mm Hg). Oxygen desaturation with exercise is often abnormal
but is non-specific.23 Elevation of lactate dehydrogenase levels to >500 mg/dL is common but also non-
specific.24 The chest radiograph typically demonstrates diffuse, bilateral, symmetrical “ground-glass”
interstitial infiltrates emanating from the hila in a butterfly pattern;21 however, in patients with early disease,
a chest radiograph may be normal.25 Atypical radiographic presentations, such as nodules, blebs and cysts,
asymmetric disease, upper lobe localization, intrathoracic adenopathy, and pneumothorax, also occur.
Spontaneous pneumothorax in a patient with HIV infection should raise the suspicion of PCP.26,27 Cavitation
and pleural effusion are uncommon in the absence of other pulmonary pathogens or malignancy, and their
presence may indicate an alternative diagnosis or an additional pathology. In fact, approximately 13% to
18% of patients with documented PCP have another concurrent cause of pulmonary dysfunction, such as
tuberculosis (TB), Kaposi sarcoma, or bacterial pneumonia.28,29
Thin-section computed tomography (CT) is a useful adjunctive study, since even in patients with mild-
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to-moderate symptoms and a normal chest radiograph, a CT scan will be abnormal, demonstrating
“ground-glass” attenuation that may be patchy, while a normal CT has a high negative predictive value.30,31
Diagnosis
Because clinical presentation, blood tests, and chest radiographs are not pathognomonic for PCP (and
because the organism cannot be cultivated routinely), histopathologic or cytopathologic demonstration of
organisms in tissue, bronchoalveolar lavage (BAL) fluid, or induced sputum samples20,28,29,32 is required for a
definitive diagnosis of PCP. Spontaneously expectorated sputum has low sensitivity for the diagnosis of PCP
and should not be submitted to the laboratory to diagnose PCP. Giemsa, Diff-Quik, and Wright stains detect
both the cystic and trophic forms of P. jirovecii but do not stain the cyst wall; Grocott-Gomori methenamine
silver, Gram-Weigert, cresyl violet, and toluidine blue stain the cyst wall. Some laboratories prefer direct
immunofluorescent staining. The sensitivity and specificity of respiratory samples for PCP depend on the
stain being used, the experience of the microbiologist or pathologist, the pathogen load, and specimen
quality. Previous studies of stained respiratory tract samples obtained by various methods indicate the
following relative diagnostic sensitivities: <50% to >90% for induced sputum, 90% to 99% for bronchoscopy
with BAL, 95% to 100% for transbronchial biopsy, and 95% to 100% for open lung biopsy.
Polymerase chain reaction (PCR) is an alternative method for diagnosing PCP. PCR is highly sensitive and
specific for detecting Pneumocystis; however, PCR cannot reliably distinguish colonization from active
disease, although higher organism loads as determined by quantitative PCR (Q-PCR) assays are likely to
represent clinically significant disease.33-35 1,3 β-D-glucan (β-glucan), which is a component of the cell
wall of Pneumocystis cysts, is often elevated in patients with PCP. The sensitivity of the β-glucan assay for
diagnosis of PCP appears to be high, thus PCP is less likely in patients with a low level of β-glucan (e.g.,
<80 pg/mL using the Fungitell assay). However, the specificity of β-glucan testing for establishing a PCP
diagnosis is low,36-38 since many other fungal diseases, cellulose membranes used for hemodialysis, and some
drugs can elevate β-glucan levels.
Because the clinical manifestations of several disease processes are similar, it is important to seek a definitive
diagnosis of PCP disease rather than rely on a presumptive diagnosis, especially in patients with moderate-to-
severe disease. However, PCP treatment can be initiated before a definitive diagnosis is established because
P. jirovecii persist in clinical specimens for days or weeks after effective therapy is initiated.32
Preventing Exposure
Pneumocystis can be quantified in the air near patients with PCP,39 and multiple outbreaks, each caused by a
distinct strain of Pneumocystis, have been documented among kidney transplant patients.5-11,40 Although these
findings strongly suggest that isolating patients with known PCP from patients at high risk for PCP may be
beneficial, there are insufficient data to support isolation as standard practice to prevent PCP (CIII).
Preventing Disease
Indication for Primary Prophylaxis
Adults and adolescents with HIV, including pregnant women and those on ART, with CD4 counts <200 cells/
mm3 should receive chemoprophylaxis against PCP (AI).12,13,41 Persons who have a CD4 cell percentage
<14% should also be considered for PCP prophylaxis (BII).12,13,41 If ART initiation must be delayed and
frequent monitoring of CD4 counts (e.g., every 3 months) is impossible, some experts recommend starting
PCP chemoprophylaxis at CD4 counts ≥200 cells/mm3 to ≤250 cells/mm3 (BII).13 Patients receiving
pyrimethamine-sulfadiazine for treatment or suppression of toxoplasmosis do not require additional
prophylaxis for PCP (AII).42
Trimethoprim-sulfamethoxazole (TMP-SMX) is the recommended prophylactic agent for PCP (AI).41,43-45
One double-strength TMP-SMX tablet daily is the preferred regimen (AI), but one single-strength tablet
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daily45 is also effective and may be better tolerated than the double-strength tablet (AI). One double-strength
TMP-SMX tablet three times weekly also is effective (BI).46 TMP-SMX at a dose of one double-strength
tablet daily confers cross protection against toxoplasmosis47 and many respiratory bacterial infections.43,48
Lower doses of TMP-SMX may also confer such protection, potentially with less toxicity, though randomized
controlled data addressing this possibility are unavailable. TMP-SMX chemoprophylaxis should be continued,
when clinically feasible, in patients who have non life threatening adverse reactions. In those who discontinue
TMP-SMX because of a mild adverse reaction, re-institution of the drug should be considered after the
reaction has resolved (AII). Therapy should be permanently discontinued (with no rechallenge) in patients
with life-threatening adverse reactions including possible or definite Stevens-Johnson syndrome or toxic
epidermal necrolysis (AIII). Patients who have experienced adverse events, including fever and rash, may
better tolerate re-introduction of TMP-SMX if the dose is gradually increased according to published regimens
(BI)49,50 or if the drug is given at a reduced dose or frequency (CIII). As many as 70% of patients can tolerate
such re-institution of TMP-SMX therapy.48
For patients who cannot tolerate TMP-SMX, alternative prophylactic regimens include dapsone (BI),43 dapsone
plus pyrimethamine plus leucovorin (BI),51-53 aerosolized pentamidine administered with the Respirgard II
nebulizer (manufactured by Marquest; Englewood, Colorado) (BI),44 and atovaquone (BI).54,55 Atovaquone is
as effective as aerosolized pentamidine54 or dapsone55 but substantially more expensive than the other regimens.
For patients seropositive for Toxoplasma gondii who cannot tolerate TMP-SMX, recommended alternatives for
prophylaxis against both PCP and toxoplasmosis include dapsone plus pyrimethamine plus leucovorin (BI),51-53
or atovaquone, with or without pyrimethamine, plus leucovorin (CIII).
The following regimens cannot be recommended as alternatives to TMP-SMX because data regarding their
efficacy for PCP prophylaxis are insufficient:
• Aerosolized pentamidine administered by nebulization devices other than the Respirgard II nebulizer
• Intermittently administered parenteral pentamidine
• Oral clindamycin plus primaquine
Clinicians can consider using these agents, however, in situations in which TMP-SMX or the recommended
alternative prophylactic regimens cannot be administered or are not tolerated (CIII).
Treating Disease
TMP-SMX is the treatment of choice for PCP (AI).70,71 Standard doses are summarized in the table; lower
doses may also be effective, potentially with less toxicity, though randomized controlled data addressing this
possibility are unavailable. The dose must be adjusted for abnormal renal function. Multiple randomized
clinical trials indicate that TMP-SMX is as effective as parenteral pentamidine and more effective than other
regimens for PCP treatment. Adding leucovorin to prevent myelosuppression during acute treatment is not
recommended because efficacy in preventing this toxicity is questionable and some evidence exists for a
higher failure rate in preventing PCP (AII).72 Outpatient therapy with oral TMP-SMX is highly effective in
patients with mild-to-moderate disease (AI).71
Mutations associated with resistance to sulfa drugs have been documented, but their effect on clinical
outcome is uncertain.73-76 Patients who have PCP despite TMP-SMX prophylaxis usually can be treated
effectively with standard doses of TMP-SMX (BIII).
Patients with documented or suspected PCP and moderate-to-severe disease, defined by room air PO2
<70 mm Hg or PAO2-PaO2 ≥35 mm Hg, should receive adjunctive corticosteroids as soon as possible and
certainly within 72 hours after starting specific PCP therapy (AI).77-82 The benefits of starting steroids later
are unclear, but most clinicians would administer them even after 72 hours for patients with moderate-to-
severe disease (BIII). Intravenous (IV) methylprednisolone at 75% of the corresponding oral prednisone
dose can be used if parenteral administration is necessary.
Alternative therapeutic regimens for mild-to-moderate disease include: dapsone and TMP (BI),71,83 which
may have efficacy similar to TMP-SMX with fewer side effects, but is less convenient given the number
of pills; clindamycin plus primaquine (BI)84-86 (clindamycin can be administered IV for more severe cases,
but primaquine is only available in an oral formulation); and atovaquone suspension (BI),70,87 which is
less effective than TMP-SMX for mild-to-moderate disease but has fewer side effects. Whenever possible,
patients should be tested for glucose-6-phosphate dehydrogenase (G6PD) deficiency before primaquine or
dapsone is administered.
Alternative therapeutic regimens for patients with moderate-to-severe disease include clindamycin-
primaquine or IV pentamidine (AI).86,88,89 Some clinicians prefer clindamycin plus primaquine because this
combination is more effective and less toxic than pentamidine.86,90-92
Aerosolized pentamidine should not be used to treat PCP because it has limited efficacy and is associated
with more frequent relapse (AI).88,93,94
The recommended duration of therapy for PCP (irrespective of regimen) is 21 days (AII).20 The probability
and rate of response to therapy depend on the agent used, number of previous PCP episodes, severity of
pulmonary illness, degree of immunodeficiency, timing of initiation of therapy, and comorbidities.
Although overall the prognosis for patients with respiratory failure due to PCP is poor, over the past decades,
survival for patients who require ICU care has improved as management of respiratory failure and HIV co-
morbidities has improved.95-98 Special attention is necessary regarding the use of ART in such critically ill
patients.99
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63% of whom had definite or presumptive PCP, the incidence of AIDS progression or death (a secondary
study endpoint) was significantly lower among participants who initiated ART early than among those who
delayed ART (median 12 days and 45 days after OI therapy initiation, respectively).100 Of note, none of the
participants with PCP enrolled in the study had respiratory failure requiring intubation;100 initiating ART in
such patients is problematic given the lack of parenteral preparations and unpredictble absorption of oral
medications, as well as potential drug interactions with agents commonly used in the ICU.101
Paradoxical immune reconstitution inflammatory syndrome (IRIS) following an episode of PCP is rare
but has been reported.102,103 Most cases occurred within weeks of the episode of PCP; symptoms included
fever and recurrence or exacerbation of pulmonary symptoms including cough and shortness of breath, as
well as worsening of a previously improving chest radiograph. Although IRIS in the setting of PCP has
only rarely been life-threatening,104 patients should be closely followed for recurrence of symptoms after
initiation of ART. Management of PCP-associated IRIS is not well defined; some experts recommend use of
corticosteroids in patients with respiratory deterioration if other causes are ruled out.
Preventing Recurrence
When to Start Secondary Prophylaxis
Secondary PCP prophylaxis with TMP-SMX should be initiated immediately upon successful completion of
PCP therapy and maintained until immune reconstitution occurs as a result of ART (see below) (AI).110 For
patients who are intolerant of TMP-SMX, the alternatives are dapsone, dapsone plus pyrimethamine plus
leucovorin, atovaquone, and aerosolized pentamidine.
Preconception Care
Clinicians who are providing pre-conception care for women with HIV receiving PCP prophylaxis
can discuss with their patients the option of deferring pregnancy until PCP prophylaxis can be safely
discontinued (i.e., CD4 cell count >200 cells/mm3 for 3 months) (BIII).
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Treating PCP
Note: Patients who develop PCP despite TMP-SMX prophylaxis usually can be treated effectively with standard doses of TMP-SMX
(BIII).
For Moderate to Severe PCP: Total Duration of Treatment is 21 Days (AII)
Preferred Therapy:
• TMP-SMX: (TMP 15–20 mg and SMX 75–100 mg)/kg/day IV given every 6 or 8 hours (AI), may switch to PO formulations after
clinical improvement (AI).
Alternative Therapy:
• Pentamidine 4 mg/kg IV once daily infused over ≥60 minutes (AI); may reduce the dose to pentamidine 3 mg/kg IV once daily in
the event of toxicities (BI), or
• Primaquineb 30 mg (base) PO once daily plus (Clindamycin [IV 600 mg every 6 hours or 900 mg every 8 hours] or [PO 450 mg
every 6 hours or 600 mg every 8 hours]) (AI).
Note: Adjunctive corticosteroids are indicated in moderate to severe cases of PCP (see indications and dosage recommendations
below).
For Mild to Moderate PCP: Total Duration of Treatment is 21 Days (AII)
Preferred Therapy:
• TMP-SMX: (TMP 15–20 mg/kg/day and SMX 75–100 mg/kg/day) PO (3 divided doses) (AI), or
• TMP-SMX 2 DS tablets PO three times daily (AI)
Alternative Therapy:
• Dapsoneb 100 mg PO daily plus TMP 15 mg/kg/day PO (3 divided doses) (BI) or
• Primaquineb 30 mg (base) PO daily plus Clindamycin PO (450 mg every 6 hours or 600 mg every 8 hours) (BI) or
• Atovaquone 750 mg PO twice daily with food (BI)
Adjunctive Corticosteroids
For Moderate to Severe PCP Based on the Following Criteria (AI):
• PaO2 <70 mmHg at room air or
• Alveolar-arterial DO2 gradient ≥35 mmHg
Dosing Schedule:
• Prednisone doses (beginning as soon as possible and within 72 hours of PCP therapy) (AI)
• Days 1–5: 40 mg PO twice daily
• Days 6–10: 40 mg PO daily
• Days 11–21: 20 mg PO daily
• IV methylprednisolone can be given as 75% of prednisone dose.
Preventing Subsequent Episode of PCP (Secondary Prophylaxis)
Indications for Initiating Secondary Prophylaxis:
• Prior PCP
Preferred Therapy:
• TMP-SMX, 1 DS tablet PO dailya (AI) or
• TMP-SMX, 1 SS tablet PO dailya (AI)
Alternative Therapy:
• TMP-SMX 1 DS tablet PO three times weekly (BI) or
• Dapsoneb,c 100 mg PO daily (BI) or
• Dapsone 50 mg PO twice daily (BI) or
• Dapsoneb 50 mg PO daily with (pyrimethamine 50 mg plus leucovorin 25 mg) PO weekly (BI) or
• (Dapsoneb 200 mg plus pyrimethamine 75 mg plus leucovorin 25 mg) PO weekly (BI) or
• Aerosolized pentamidinec 300 mg via Respigard II™ nebulizer every month (BI) or
• Atovaquone 1500 mg PO daily with food (BI) or
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• (Atovaquone 1500 mg plus pyrimethamine 25 mg plus leucovorin 10 mg) PO daily with food (CIII)
Indications for Discontinuing Secondary Prophylaxis:
• CD4 count increased from <200 cells/mm3 to >200 cells/mm3 for >3 months as a result of ART (BII) or
•C an consider if CD4 count is 100–200 cells/mm3 and HIV RNA remains below limits of detection of assay used for ≥3 months to 6
months (BII)
• For patients in whom PCP occurs at a CD4 count >200 cells/mm3 while not on ART, discontinuation of prophylaxis can be
considered once HIV RNA levels are suppressed to below limits of detection of the assay used for ≥3 months to 6 months,
although there are no data to support recommendations in this setting (CIII).
Note: If an episode of PCP occurs at a CD4 count >200 cells/mm3 while a patient is on ART, it would be prudent to continue PCP
prophylaxis for life, regardless of how high the CD4 cell count rises as a consequence of ART (BIII).
Indications for Restarting Secondary Prophylaxis:
• CD4 count <100 cells/mm3 regardless of HIV RNA (AIII)
• CD4 count 100–200 cells/mm3 and HIV RNA above detection limit of the assay used (AIII).
Other Considerations/Comments:
• For patients with non-life-threatening adverse reactions to TMP-SMX, the drug should be continued if clinically feasible.
• If TMP-SMX is discontinued because of a mild adverse reaction, re-institution of therapy should be considered after the reaction
has resolved (AII). The dose of TMP-SMX can be increased gradually (desensitization) (BI) or the drug can be given at a reduced
dose or frequency (CIII).
• Therapy should be permanently discontinued, with no rechallenge, in patients with suspected or confirmed Stevens-Johnson
Syndrome or toxic epidermal necrolysis (AIII).
a
T MP-SMX DS once daily also confers protection against toxoplasmosis and many respiratory bacterial infections; a lower dose also
likely confers protection.
b
Whenever possible, patients should be tested for G6PD deficiency before administration of dapsone or primaquine. An alternative
agent should be used if the patient is found to have G6PD deficiency.
c
Aerosolized pentamidine or dapsone (without pyrimethamine) should not be used for PCP prophylaxis in patients who are
seropositive for Toxoplasma gondii.
Acronyms: ART = antiretroviral therapy; CD4 = CD4 T lymphocyte cell; DS = double strength; IV = intravenously; PCP = Pneumocystis
pneumonia; PO = orally; SS = single strength; TMP = trimethoprim; TMP-SMX = trimethoprim-sulfamethoxazole
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