tmp37D6 TMP
tmp37D6 TMP
tmp37D6 TMP
PAPER
Central metabolic processes of marine macrophytic
algae revealed from NMR based metabolome analysis3
Cite this: RSC Advances, 2013, 3,
7037
hypothesis of conserved evolution of lignification trait. Also, the metabolites of non-neuronal cholinergic
system and non-proteinaceous cysteine-sulfinic acid oxoforms identified in this study are the constituents
of redox sensing mechanism. Further, the fluxes of lactate and acetate are indicative for the regulatory
switching of oxidative respiration to fermentative glycolysis. The biological functions of identified
DOI: 10.1039/c3ra23017a
metabolites were then associated with the known metabolic pathways in a metabolic model summarizing
www.rsc.org/advances
Introduction
The metabolome analysis offers a snapshot of cells catalytic
and regulatory processes. Such analysis is often of more
biological relevance than other -omes as it reflects the
immediate biochemical consequences of genomic and transcriptomic activity.1 Metabolomics is therefore gaining prominence in the area of integrated systems biology and emerging
as an essential analytical tool in the post-genomic era.24
Metabolomics has made major contributions in trait development among agricultural crops, functional annotation of
unknown genes,5 correlating genotype with phenotype6,7 and
provide greater understanding of the stress tolerance mechanisms.810
The challenge with metabolomics, however, lies in addressing the vast complexity and chemical heterogeneity of
biological metabolites. As a result, many metabolomic studies
employ a range of spectroscopic techniques with Nuclear
Magnetic Resonance (NMR) spectroscopy and Mass spectrometry (GC-MS and LC-MS) being the most commonly
preferred.11 Each technique has its distinct advantage and
a
Paper
and to understand the short term responses against saline and
oxidative stress.31 Macroalgae play an important role in
sustaining the productivity of coastal ecosystems, and have a
variety of economic uses.32,33 Metabolite profile of macroalgal
species will be of interest to understand their adaptive
mechanisms against the concomitant acute stress induced
by marine environment and will also allow to identify bioactive
compounds of human health benefits.
In this study metabolite profiling of marine macrophytic
algal species was carried out using NMR spectroscopy, and
their functional relevance was discussed following various
metabolic pathways. One dimensional 1H NMR spectra,
together with two dimensional homo- and hetero-nuclear
spectra (TOCSY and HSQC), indispensable tools for metabolite
identification,34 were employed.
RSC Advances
freeze drying.35 NMR spectra from freeze dried algal thalli on
comparison with that of the spectra of direct aqueous extract
in this study revealed loss of signals for acetate and
coniferaldehyde in U. lactuca (Fig. 3). Because of the loss of
metabolites, spectra for other freeze dried algal species were
not acquired. Identification of these metabolites provided
preliminary evidence for the existence of lignification trait and
fermentative metabolic regulations in marine macroalgal
species. Concomitantly, freeze drying is a time consuming
and energy intensive step. Another additional advantage of the
developed method is that the spectra were free from the
residual proton resonances of d4-methanol (d 3.3) which
otherwise mask the betaine signal at d 3.27.37 Betaine is a
primary osmoprotectant and requires to be identified unambiguously for water submerged plants. The developed method
thereby minimizes the sample preparation efforts and maximizes the throughput.
The aforementioned indication about the existence of
ligninification trait was confirmed by derivatization followed
by reductive cleavage (DFRC) method. DFRC method is
considered diagnostic for lignin as it specifically cleaves at bO-4 linkages and releases the acetylated mono-lignols.39
Lignin precursors identified in this study include acetates of
guaiacyl and syringyl units of coniferyl and sinapyl alcohol
(Fig. 4). These lignin precursors were reported from protoxylem and metaxylem vessels and fibres of angiosperm
respectively.39 Lignification trait is a key innovation in the
evolution of terrestrial plants from aquatic ancestors. Martone
et al.,39 although, discovered lignification in coralline red
algae Calliarthron cheilosporiodes, the trait was considered to
be non-existing in green algae.40 Red algae have diverged from
vascular plants more than 1 billion years ago thereby finding
of lignification trait in green alga has direct ancestral
eira et al.41 identified peroxidases capable
relevance.41 Espin
of oxidizing monolignols in Ulva rigida but unequivocal
evidence about the existence of lignin was not shown even
after employing the confirmatory thioacidolysis method.
Recently, Srensen et al.42 after thioacidolysis method confirmed the release of guaiacyl and syringyl monomers from
Coleochaete species (Charophyta) indicating the presence of
lignin or lignin-like polymers. The finding of acetates of
guaiacyl and syringyl units in U. lactuca (Chlorophyta), the
monophyletic lineage of Charophyta, supports the hypothesis
of evolutionary transition of this trait from aquatic to land
habitat (Fig. 5). The phenylpropanoid metabolism such as
biosynthesis of lignin in land plants is an adaptation of
secondary metabolism which evolved from algal ancestors.43
Therefore finding of the lignification trait in green algae
supports for the inter-relationship among plant cell wall
architecture with algal ancestors (Fig. 5).
All the identified metabolites and their respective 1H and
1
H13C correlation peaks are listed in Table 1 and are shown in
ESI, Fig. S2 and S3.3 The NMR spectra acquired for the samples
collected during the December month showed anomeric
signals of carbohydrates such as glucose (d 4.48 d), galactose
(d 4.0 t) and sucrose (d 5.4 d) in U. lactuca; glucose (d 4.2 d) and
RSC Advances
Paper
Fig. 1 1H NMR spectra of (1) Ulva lactuca, (2) Gracilaria dura and (3) Sargassum tenerrimum acquired during the month of April/May using (a) organic solvent extract
and (b) aqueous extract.
Paper
RSC Advances
Fig. 2 1H NMR spectra of (1) Ulva lactuca, (2) Gracilaria dura and (3) Sargassum tenerrimum acquired during month of December using (a) organic solvent extract and
(b) aqueous extract.
RSC Advances
Paper
Fig. 3 1H NMR spectra of Ulva lactuca (a) after freeze drying and (b) direct aqueous extract. Arrows indicated the peaks found missing after freeze drying.
Paper
RSC Advances
Fig. 4 Characterization of lignin monomers from Ulva lactuca using DFRC method. (a) GC retention time of the derivatized extract and mass fragmentation pattern of
(b) guaiacyl and (c) syringyl units released. Inset image represent the mass fragmentation of respective units determined by Martone et al. (2009).
RSC Advances
Paper
Fig. 5 Evolutionary relationship of lignification trait of marine chlorophycean alga U. lactuca with terrestrial plants. Figure is modified from Martone et al. (2009)
where * represents the gap filled by this study.
Paper
RSC Advances
Table 1 Metabolites identified using 1D and 2D NMR analysis from the aqueous extract of investigated marine macrophytic algal species
Glucose
Galactose
Sucrose
Sorbitol
Lactate
Acetate
Alanine
Glutamic acid
Hypotaurine
Coniferaldehyde
a-Ketoglutaric acid
Isethionic acid
Proline
Aspartate
Glutamine
Creatinine
L-Cysteinesulfinic acid
Cysteine
Threonine
Ethanolamine
Choline
Betaine
Glycine
Triethanolamine
Creatine
Succinic acid
Acetylcholine
Experimental
Sample collection
The macroalgal samples of Ulva lactuca (Chlorophyta), and
Gracilaria dura (Rhodophyta) were collected from Veraval (N
20u 54.879; E 70u 20.839) and Sargassum tenerrimum
(Phaeophyta) from Okha (N 22u 27.049; E 69u 03.58), Gujarat
coast of India. All sample collections were made from
intertidal area between 1011 a.m. from the respective sites
during different months of the years 2011 and 2012. The
collected algal samples were transported to the laboratory in
seawater under constant temperature of 20 uC. After bringing
to the laboratory, samples were rinsed several times in
autoclaved seawater to remove dirt and adhering particles
and thereafter, cleaned with a drawing brush to remove
epiphytes from thallus.
Extraction of algal metabolites
The metabolite extraction strategies employed in this study
includes: 1) aqueous extract and 2) the organic solvent
extract.3537 These extracts were prepared from three biological
replicates of each algal thalli of U. lactuca and G. dura and
from the leafy blades of S. tenerrimum. The solvent extracts
HSQC (1H13C)
RSC Advances
Paper
Fig. 6 Metabolic model framed by mapping the functional relevance of the identified metabolites providing information onto the central metabolic processes of
marine macrophytic algae.
Paper
Conclusion
Metabolome analysis aids in linking the metabolites level
mechanisms with other complementary -omics and also lead
to identify active compounds of human health benefits. The
untargeted metabolite information generated for the first time
for marine macrophytic algae provided newer insights into the
key aspects about their functionality and biochemical regulations. The identification of lignin precursors in green alga Ulva
lactuca supports the hypothesis of conserved evolution of
lignification traits in terrestrial plant from aquatic algal
ancestors. Also, biochemical regulatory mechanisms including
non-neuronal cholinergic system and sulfinic acid switch for
redox signalling were determined. Further, a facile and
tractable method particularly suitable for metabolite profiling
of marine macroalgal species was developed. The method
minimizes the duration of sample preparation efforts and
maximizes the throughput and also circumvents the use of
organic deuterated solvents. These advantages reflected the
potentials for utilization of this method as a rapid fingerprinting tool to complement the conventional taxonomic
approaches. Moreover, the generated snapshots of cellular
activities are a complement for other -omic approaches and
pave the way for further investigation.
Acknowledgements
We thank the Council of Scientific and Industrial Research
(CSIR), New Delhi for the financial support under network
project NWP018 and OLP 0007 for maintenance of sophisticated analytical instruments. Mr. Vishal thanks CSIR for
awarding Senior Research Fellowship. We sincerely thank Dr
Pia Winberg and Dr Lisa Kirkendale, Wollongong University,
Australia, and Prof. John H. Bothwell, Queens University,
Belfast for reviewing the manuscript. We also thank Mr.
Harshad Brahmbhatt for GC-MS analysis.
References
1 R. D. Hall, New Phytol., 2006, 169, 453468.
2 Editorial, Nat. Chem. Biol., 2012, 8, 495495.
3 K. Saito and F. Matsuda, Annu. Rev. Plant Biol., 2010, 61,
463489.
4 N. Blow, Nature, 2008, 455, 697700.
5 N. Schauer and A. R. Fernie, Trends Plant Sci., 2006, 11,
508516.
6 M. Steinfath, N. Strehmel, R. Peters, N. Schauer, D. Groth,
J. Hummel, M. Steup, J. Selbig, J. Kopka, P. Geigenberger
and J. T. van Dongen, Plant Biotechnol. J., 2010, 8, 900911.
7 F. Matsuda, Y. Okazaki, A. Oikawa, M. Kusano, R. Nakabayashi,
J. Kikuchi, J. Yonemaru, K. Ebana, M. Yano and K. Saito, Plant J.,
2012, 70, 624636.
8 A. Foito, S. L. Byrne, T. Shepherd, D. Stewart and S. Barth,
Plant Biotechnol. J., 2009, 7, 719732.
gele, S. Stutz, I. I. Ho
rmiller and A. G. Heyer, Plant J.,
9 T. Na
2012, 72, 102114.
RSC Advances
10 A. Yobi, B. W. M. Wone, W. Xu, D. C. Alexander, L. Guo, J.
A. Ryals, M. J. Oliver and J. C. Cushman, Plant J., 2012, 72,
983999.
11 R. A. Dixon, D. R. Gang, A. J. Charlton, O. Fiehn, H.
A. Kuiper, T. L. Reynolds, R. S. Tjeerdema, E. H. Jeffery, J.
B. German, W. P. Ridley and J. N. Seiber, J. Agric. Food
Chem., 2006, 54, 89848994.
12 J. L. Ward, J. M. Baker, S. J. Miller, C. Deborde,
M. Maucourt, B. Biais, D. Rolin, A. Moing, S. Moco,
J. Vervoort, A. Lommen, H. Schaefer, E. Humpfer and M.
H. Beale, Metabolomics, 2010, 6, 263273.
13 A. Oikawa and K. Saito, Plant J., 2012, 70, 3038.
14 S. Kueger, D. Steinhauser, L. Willmitzer and P. Giavalisco,
Plant J., 2012, 70, 3950.
15 H. K. Kim, Y. H. Choi and R. Verpoorte, Trends Biotechnol.,
2011, 29, 267275.
16 G. Mulas, M. G. Galaffu, L. Pretti, G. Nieddu, L. Mercenaro,
R. Tonelli and R. Anedda, J. Agric. Food Chem., 2011, 59,
793802.
17 D. S. Wishart, TrAC, Trends Anal. Chem., 2008, 27, 228237.
18 J. L. Ward, C. Harris, J. Lewis and M. H. Beale,
Phytochemistry, 2003, 62, 949957.
19 H. K. Kim, Y. H. Choi, C. Erkelens, A. W. M. Lefeber and
R. Verpoorte, Chem. Pharm. Bull., 2005, 53, 105109.
20 C. Broyart, J. X. Fontaine, R. Molinie, D. Cailleu, T. TerceLaforgue, F. Dubois, B. Hirel and F. Mesnard, Phytochem.
Anal., 2010, 21, 102109.
21 A. Charlton, T. Allnutt, S. Holmes, J. Chisholm, S. Bean,
N. Ellis, P. Mullineaux and S. Oehlschlager, Plant
Biotechnol. J., 2004, 2, 2735.
22 H. K. Choi, Y. H. Choi, M. Verberne, A. W. M. Lefeber,
C. Erkelens and R. Verpoorte, Phytochemistry, 2004, 65,
857864.
23 E. Barros, S. Lezar, M. J. Anttonen, J. P. van Dijk, R.
M. Roehlig, E. J. Kok and K. H. Engel, Plant Biotechnol. J.,
2010, 8, 436451.
24 Y. H. Choi, E. C. Tapias, H. K. Kim, A. W. M. Lefeber,
C. Erkelens, J. T. J. Verhoeven, J. Brzin, J. Zel and
R. Verpoorte, Plant Physiol., 2004, 135, 23982410.
25 J. L. Ward, S. Forcat, M. Beckmann, M. Bennett, S. J. Miller,
J. M. Baker, N. D. Hawkins, C. P. Lu, C. Vermeer, W. Lin, W.
M. Truman, M. H. Beale, J. Draper, J. W. Mansfield and
M. Grant, Plant J., 2010, 63, 443457.
26 A. R. Fernie, A. Aharoni, L. Willmitzer, M. Stitt, T. Tohge,
J. Kopka, A. J. Carroll, K. Saito, P. D. Fraser and V. DeLuca,
Plant Cell, 2011, 23, 24772482.
27 D. Ryan and K. Robards, Anal. Chem., 2006, 78, 79547958.
28 S. Goulitquer, P. Potin and T. Tonon, Mar. Drugs, 2012, 10,
849880.
29 G. D. J. Davis and A. H. R. Vasanthi, Bioinformation, 2011, 5,
361364.
30 A. Gravot, S. M. Dittami, S. Rousvoal, R. Lugan, A. Eggert,
n, C. Boyen, A. Bouchereau and T. Tonon, New
J. Colle
Phytol., 2010, 188, 98110.
31 S. M. Dittami, A. Gravot, D. Renault, S. Goulitquer, A. Eggert,
A. Bouchereau, C. Boyen and T. Tonon, Plant, Cell Environ.,
2011, 34, 629642.
32 M. D. Hanisak, World Aqua., 1998, 29, 1821.
33 D. J. McHugh, FAO Fisheries Technical Paper, 2003, 441,
1105.
RSC Advances
34 T. W. M. Fan and A. N. Lane, Prog. Nucl. Magn. Reson.
Spectrosc., 2008, 52, 69117.
35 H. K. Kim, Y. H. Choi and R. Verpoorte, Nat. Protoc., 2010,
5, 536549.
de
rich, C. Jansen, P. de Tullio, M. Tits, V. Demoulin
36 M. Fre
and L. Angenot, Phytochem. Anal., 2010, 21, 6165.
37 S. F. Graham, E. Amigues, M. Migaud and R. A. Browne,
Metabolomics, 2009, 5, 302306.
38 K. A. Kaiser, G. A. Barding Jr and C. K. Larive, Magn. Reson.
Chem., 2009, 47, S147S156.
39 P. T. Martone, J. M. Lu, F. Estevez, K. Ruel, M. W. Denny,
C. Somerville and J. Ralph, Curr. Biol., 2009, 19, 169175.
40 P. Sarkar, E. Bosneaga and M. Auer, J. Exp. Bot., 2009, 60,
36153635.
eira, E. Novo-Uzal, L. V. Gomez-Ros, J.
41 J. M. Espin
S. Carrion, F. Merino, A. M. Ros-Barcelo and F. Pomar,
Plant Biol., 2011, 13, 5968.
42 I. Srensen, F. A. Pettolino, A. Bacic, J. Ralph, F. Lu, M.
Neill, Z. Fei, J. K. C. Rose, D. S. Domozych and W. G.
A. O
T. Willats, Plant J., 2011, 68, 201211.
43 J. K. Weng and C. Chapple, New Phytol., 2010, 187,
273285.
44 J. Fleurence, Trends Food Sci. Technol., 1999, 10, 2528.
45 M. D. Bolton, Mol. Plant-Microbe Interact., 2009, 22,
487497.
46 A. K. Siddhanta, A. M. Goswami, B. K. Ramavat, K. H. Mody
and O. P. Mairh, Indian J. Mar. Sci., 2001, 30, 166172.
47 A. S. Rao and M. U. Rao, Indian J. Mar. Sci., 2002, 31, 2632.
48 A. Tretyn and R. E. Kendrick, Bot. Rev., 1991, 57, 3373.
Paper
49 I. Wessler and C. J. Kirkpatrick, Br. J. Pharmacol., 2008, 154,
15581571.
50 Y. Jung, J. Lee, H. K. Kim, B. C. Moon, Y. Ji, D. H. Ryu and
G. S. Hwang, Analyst, 2012, 137, 55975606.
51 M. Lin and D. J. Oliver, Plant Physiol., 2008, 147,
18221829.
52 N. Gass, T. Glagotskaia, S. Mellema, J. Stuurman, M. Barone,
T. Mandel, U. Roessner-Tunali and C. Kuhlemeier, Plant
Cell, 2005, 17, 23552368.
53 M. Tadege, I. Dupuis and C. Kuhlemeier, Trends Plant Sci.,
1999, 4, 320325.
54 M. Rocha, F. Licausi, W. L. Araujo, A. Nunes-Nesi, L. Sodek,
A. R. Fernie and J. T. van Dongen, Plant Physiol., 2010, 152,
15011513.
55 R. Narsai, M. Rocha, P. Geigenberger, J. Whelan and J.
T. van Dongen, New Phytol., 2011, 190, 472487.
56 O. Pedersen, S. M. Rich and T. D. Colmer, Plant J., 2009, 58,
147156.
57 S. Justin and W. Armstrong, New Phytol., 1987, 106,
465495.
58 P. T. Lynett, K. Butts, V. Vaidya, G. E. Garrett and D. A. Pratt,
Org. Biomol. Chem., 2011, 9, 33203330.
59 R. Lourenco and M.E. Camilo, Nutricion Hospitalaria, 2002,
17, 262270.
60 C. Hellio, C. Simon-Colin, A. S. Clare and E. Deslandes,
Biofouling, 2004, 20, 139145.
61 J. S. Kim, Y. H. Kim, Y. W. Seo and S. Park, Biotechnol.
Bioprocess Eng., 2007, 12, 308311.
62 F. C. Lu and J. Ralph, J. Agric. Food Chem., 1997, 45, 25902592.