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Expression of genes of the locus of enterocyte effacement (LEE) is essential for adherence of enterohemorrhagic Escherichia coli (EHEC) to intestinal epithelial cells. Gut factors that may modulate LEE gene expression may therefore... more
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      MicrobiologyImmunologyMedical MicrobiologyTranscription Factors
Enterohemorrhagic Escherichia coli (EHEC) O157:H7 is a foodborne pathogen that resists the acidic gastric environment, colonizes the gut epithelium, and causes hemorrhagic colitis and hemolytic-uremic syndrome, especially in children. The... more
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      ZoologyBiofilmsRNABiofilm
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      ImmunologyImmunology of the GutHelicobacter pyloriSignal Transduction
BACKGROUND & AIMS-Helicobacter pylori-induced immune responses fail to eradicate the bacterium. Nitric oxide (NO) can kill H. pylori. However, translation of inducible NO synthase (iNOS) and NO generation by H. pylori-stimulated... more
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      GastroenterologyRNAMacrophagesHelicobacter pylori
BACKGROUND & AIMS-Helicobacter pylori-induced gastric carcinogenesis has been linked to the microbial oncoprotein CagA. Spermine oxidase (SMO) metabolizes the polyamine spermine into spermidine and generates H 2 O 2 that causes apoptosis... more
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      GastroenterologyOxidative StressHelicobacter pyloriDNA damage
Background and Aim: Dysregulated epithelial secretory function can lead to the clinical manifestation of diarrhea. Intestinal fluid secretion is driven by active Clion secretion and is dependent on the availability of O 2 for generation... more
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      Immune responseGastroenterologyHelicobacter pyloriClinical Sciences
Helicobacter pylori infection persists for the life of the host due to the failure of the immune response to eradicate the bacterium. Determining how H. pylori escapes the immune response in its gastric niche is clinically important. We... more
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      ImmunologyMacrophagesImmunology of the GutHelicobacter pylori
Once acquired, Helicobacter pylori infection is lifelong due to an inadequate innate and adaptive immune response. Our previous studies indicate that interactions among the various pathways of arginine metabolism in the host are critical... more
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      Immune responseMacrophagesHelicobacter pyloriInnate immunity
The antimicrobial effect of nitric oxide (NO) is an essential part of innate immunity. The vigorous host response to the human gastric pathogen Helicobacter pylori fails to eradicate the organism, despite up-regulation of inducible NO... more
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      MacrophagesHelicobacter pyloriGene expressionMultidisciplinary
who achieved clinical response at wk8 were randomized to IFX 5mg/kg q8wks through wk46 or q12wks through wk42. Non-responders were discontinued from study agent. Results: 60 patients were enrolled. Baseline demographics and disease... more
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      GastroenterologyHeme OxygenaseEpidemiology of Helicobacter pylori infectionClinical Sciences
Helicobacter pylori incites a futile inflammatory response, which is the key feature of its immunopathogenesis. This leads to the ability of this bacterial pathogen to survive in the stomach and cause peptic ulcers and gastric cancer.... more
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      ImmunologyInflammationMembrane ProteinsEnzyme Inhibitors
The microbial spoilage of meat and seafood products with short shelf lives is responsible for a significant amount of food waste. Food spoilage is a very heterogeneous process, involving the growth of various, poorly characterized... more
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    • Microbiology
Background: A custom phylogenetic microarray composed of small subunit ribosomal RNA probes, representing %500 bacterial species from the human and animal gut, was developed and evaluated for analysis of gut microbial diversity using... more
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      Western blottingreal time PCRInflammatory Bowel DiseaseBacteria
The paradox of a host specificity of the human faecal microbiota otherwise acknowledged as characterized by global functionalities conserved between humans led us to explore the existence of a phylogenetic core. We investigated the... more
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      MicrobiologyEnvironmental microbiologyBiodiversityGut Microbiota
Our knowledge of species and functional composition of the human gut microbiome is rapidly increasing, but it is still based on very few cohorts and little is known about variation across the world. By combining 22 newly sequenced faecal... more
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      MicrobiologyFunctional AnalysisBiodiversityMetagenomics
To understand the impact of gut microbes on human health and well-being it is crucial to assess their genetic potential. Here we describe the Illumina-based metagenomic sequencing, assembly and characterization of 3.3 million... more
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      BioinformaticsGeneticsMicrobiologyGenomics
OBJECTIVE. We examined the presence of a natural bacterial inoculum in breast milk and its intracellular transport from the maternal intestine to the breast through the circulation.
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      GeneticsPediatricsLactationMaternal and Child Health
Mucosal dendritic cells are at the heart of decision-making processes that dictate immune reactivity to intestinal microbes. They ensure tolerance to commensal bacteria and a vigorous immune response to pathogens. It has recently been... more
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      Nutrition and DieteticsLactationDendritic CellsPregnancy
Many analyses of the human gut microbiome depend on a catalog of reference genes. Existing catalogs for the human gut microbiome are based on samples from single cohorts or on reference genomes or protein sequences, which limits coverage... more
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      MetagenomicsMultidisciplinaryIntestinesMicrobiota
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      MicrobiologyHydrogenCarbon DioxideMedical Microbiology