(Q33900045)

29 July 2017

title

Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra (English)

1 reference

29 July 2017

Richard D Smith

8

0 references

Pavel A. Pevzner

9

object named as

Pavel A Pevzner

1 reference

29 July 2017

5

Nuno Bandeira

1 reference

29 July 2017

Ari M Frank

1

1 reference

29 July 2017

Matthew E Monroe

2

1 reference

29 July 2017

Anuj R Shah

3

1 reference

29 July 2017

Jeremy J Carver

4

1 reference

29 July 2017

Ronald J Moore

6

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29 July 2017

Gordon A Anderson

7

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29 July 2017

publication date

15 May 2011

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29 July 2017

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29 July 2017

volume

8

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29 July 2017

issue

7

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29 July 2017

page(s)

587-591

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Optimization and testing of mass spectral library search algorithms for compound identification

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

False discovery rates of protein identifications: a strike against the two-peptide rule

5 July 2018

1 reference

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Identification of early intestinal neoplasia protein biomarkers using laser capture microdissection and MALDI MS

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Clustering millions of tandem mass spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Targeted discovery of novel human exons by comparative genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Implementation and application of a versatile clustering tool for tandem mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Protein identification by spectral networks analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Development and validation of a spectral library searching method for peptide identification from MS/MS.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

msmsEval: tandem mass spectral quality assignment for high-throughput proteomics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Methods for peptide identification by spectral comparison

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Improving gene annotation using peptide mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Using annotated peptide mass spectrum libraries for protein identification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

A fast coarse filtering method for peptide identification by mass spectrometry.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Identification of post-translational modifications via blind search of mass-spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Quality classification of tandem mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Proteomics-grade de novo sequencing approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

PepNovo: de novo peptide sequencing via probabilistic network modeling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Targeted comparative proteomics by liquid chromatography-tandem Fourier ion cyclotron resonance mass spectrometry.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Improving large-scale proteomics by clustering of mass spectrometry data.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Proteogenomic mapping as a complementary method to perform genome annotation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Matching peptide mass spectra to EST and genomic DNA databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128193

MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

Identification of post-translational modifications by blind search of mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

SPIDER: software for protein identification from sequence tags with de novo sequencing error

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

Algorithm for identification of fusion proteins via mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

Near-optimal hashing algorithms for approximate nearest neighbor in high dimensions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

Automatic quality assessment of peptide tandem mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1609

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21572408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.1609

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference