Short Text Topic Modeling, JAVA

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

A RTI library for creating and visualizing Reflectance Transformation Imaging

Guide to precision network time synchronization on PC hardware

An ensemble-based approach for prediction of protein S-nitrosylation sites integrating supervised word embedding and embedding from protein language model

Proteomics Mass Spectrometry Datasets for Machine Learning

Construction, quantification, and visualization of proteoform families

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

Code to generate the PTMTorrent dataset

Examples of 8051 assembler code

PTM-X: a prediction tool for Post-Translational Modification cross-talk

Comet-PTM, branch of Comet MS/MS

The Kinase Library: a Global Atlas of the Human Protein Kinome

Lightweight polynomial texture map viewer based on PySide2 and OpenGL

Another needleplot for mutation data, used by ActiveDriverDB

PTM models for spectre and ACE

Summarize post-translationally modified amino acid sites, peptides and proteins for Proteome Discoverer output

Jupyter notebook examples of SCOP3P REST API services

FinFET Registers - Instituto de Informática da UFRGS

Some phosphoproteomics useful notebooks and sources