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23 Open 168 Closed
23 Open 168 Closed
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Issues list

Set up Jenkins testing
#524 opened Sep 10, 2018 by acesnik
7 tasks
Fill in gaps in identification code testing Testing
#523 opened Sep 7, 2018 by acesnik
1
Biological deamidation special cases Improve Feature New Feature
#522 opened Sep 6, 2018 by acesnik
Tidying up DLLs ... or make an installer to put the DLLs far away GUI Enhancement Improve Feature
#502 opened Apr 11, 2018 by acesnik
1
Lollipop fields -> properties Code Quality
#496 opened Feb 27, 2018 by acesnik
Automatically optimizing parameters New Feature
#486 opened Feb 6, 2018 by acesnik
2
Create a .pdf user manual Documentation
#485 opened Jan 31, 2018 by leahvschaffer 0.4.0 End-to-end processing
1
Modification types to exclude on Theoretical form not in methods/presets because string[] Improve Feature
#460 opened Sep 5, 2017 by leahvschaffer 0.4.0 End-to-end processing
Output proteoform IDs in ProForma format New Feature
#423 opened Jul 21, 2017 by trishorts 1.0.0 Future tasks
3
Add "Possible PFR Numbers" from UniProt in theoretical database and Cytoscape display Cytoscape Scripting New Feature
#420 opened Jul 14, 2017 by trishorts 0.4.0 End-to-end processing
4
What does ET histogram look like for orphans only? Question
#408 opened Jun 6, 2017 by acesnik 1.0.0 Future tasks
1
Look for SUMOylation and ubiquitylation (with adjusted lysine count) New Feature Question
#407 opened Jun 6, 2017 by acesnik 1.0.0 Future tasks
Looking into relations that are ditched because of no-mans-land Question
#403 opened May 30, 2017 by acesnik 1.0.0 Future tasks
1
Extend UnlocalizedModification to represent complicated mods as set of simpler ones Improve Feature
#398 opened May 22, 2017 by acesnik 0.4.0 End-to-end processing
1
Between-proteoform quantification New Feature
#365 opened Apr 20, 2017 by acesnik 1.0.0 Future tasks
2
Commandline ProteoformSuite New Feature
#362 opened Apr 19, 2017 by acesnik 0.4.0 End-to-end processing
1
Can't mass shift first peak in DGV Bug
#346 opened Apr 5, 2017 by leahvschaffer 1.0.0 Future tasks
5
More information in cytoscape node tables Cytoscape Bug Cytoscape Scripting
#328 opened Mar 21, 2017 by acesnik
2
Look for contaminant proteoforms with natural abundance masses (not NeuCode) Need More Information
#297 opened Mar 4, 2017 by acesnik
6
Automating mass shifting New Feature
#235 opened Oct 27, 2016 by acesnik 1.0.0 Future tasks
2
Manual monoisotope shift for EE relations New Feature
#183 opened Jul 28, 2016 by trishorts 0.4.0 End-to-end processing
2
Verify ptmlist and uniprot-xml making the databases GUI Stability
#79 opened May 3, 2016 by acesnik 1.0.0 Future tasks
Import/export proteoform IDs from/to outside database, e.g. CTDP New Feature
#59 opened Apr 5, 2016 by trishorts 0.4.0 End-to-end processing
1
ProTip! no:milestone will show everything without a milestone.