Statistical learning for Biomedicine

All

27 repositories

clonaltrans
Public
Estimation of clone-specific dynamical transition rate
Jupyter Notebook
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MIT License
•0•4•0•0•Updated Dec 16, 2024Dec 16, 2024
FineST
Public
Python
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Apache License 2.0
•1•0•0•0•Updated Dec 16, 2024Dec 16, 2024
SNPmanifold
Public
Manifold learning for single-cell single-nucleotide genetic variations
single-cell manifold-learning genetic-variants variational-autoencoder
Jupyter Notebook
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Apache License 2.0
•0•2•0•0•Updated Dec 16, 2024Dec 16, 2024
TemporalVAE
Public
Jupyter Notebook
•0•1•0•0•Updated Dec 15, 2024Dec 15, 2024
TemporalVAE-release
Public
Release repo for TemporalVAE
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Dec 15, 2024Dec 15, 2024
sbms-server
Public
School of Biomedical Sciences (HKU) server wiki repository
Shell
•4•4•0•3•Updated Dec 9, 2024Dec 9, 2024
HLab-pubmon
Public
Publication monitoring at Huang Lab
TeX
•10•2•0•0•Updated Dec 5, 2024Dec 5, 2024
BMDS-book
Public
Biomedical Data Science book
case-studies r-programming biomedical-data-science
HTML
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Creative Commons Zero v1.0 Universal
•3•6•0•1•Updated Nov 27, 2024Nov 27, 2024
SpatialDM
Public
Spatial direct messaging detected by bivariate Moran
spatial-transcriptomics spatial-correlation cell-cell-communication ligand-receptor-interaction
Jupyter Notebook
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Apache License 2.0
•5•24•12•1•Updated Nov 22, 2024Nov 22, 2024
UniTVelo
Public
UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
velocity inference rna transcriptomics trajectory
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•9•26•2•0•Updated Nov 12, 2024Nov 12, 2024
statbiomed.github.io
Public
GitHub page of statistical learning for biomedicine
CSS
•0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
stemVAE_endometrium
Public
Version: alph; Time: 231128; Owner: awa121
Python
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MIT License
•0•1•0•0•Updated Oct 18, 2024Oct 18, 2024
CRAK-Velo
Public
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•0•3•0•0•Updated Sep 16, 2024Sep 16, 2024
HKUbioinfoNet
Public
HKU Bioinformatics Seminars
0•2•0•0•Updated Sep 8, 2024Sep 8, 2024
scTail
Public
Detection and quantify alternative polyA site
Jupyter Notebook
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Apache License 2.0
•0•1•1•0•Updated Aug 7, 2024Aug 7, 2024
HKSingleCell2022
Public
Workshop on single cell data science 2022
conference-website single-cell-data-science
0•0•0•0•Updated May 29, 2024May 29, 2024
CamoTSS
Public
Detection and couting alternative TSS in single cells
Jupyter Notebook
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Apache License 2.0
•3•10•4•0•Updated Apr 21, 2024Apr 21, 2024
BBMix
Public
Inference of Beta-binomial mixture model
Python
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Apache License 2.0
•1•3•1•0•Updated Oct 11, 2023Oct 11, 2023
NegabinGLM
Public
NegabinGLM: Negative-binomial regression model
Jupyter Notebook
•0•0•0•0•Updated Jul 18, 2023Jul 18, 2023
SpatialCV
Public
Spatial Co-Variable gene pair analysis
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 8, 2022Nov 8, 2022
BetabinGLM
Public
Beta-binomial regression model
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 2, 2022Nov 2, 2022
GLM-hackathon
Public
Hackathon on GLM implementation for summer internship
Jupyter Notebook
•0•0•0•0•Updated Jul 30, 2022Jul 30, 2022
HKU-single-cell-workshop
Public
Single-cell analysis workshop at HKU
3•7•0•0•Updated Jul 25, 2022Jul 25, 2022
scRNA-efficiency-prediction
Public
Prediction of RNA splicing kinetics in scRNA-seq data
Python
•0•2•0•0•Updated May 3, 2022May 3, 2022
mito-RNAediting
Public
1•0•0•0•Updated Apr 23, 2022Apr 23, 2022
SingleCell-Workshop-2021
Public
Module 4 for HKU Single-cell Workshop
tutorials single-cell-rna-seq trajectory-inference rna-velocity cellular-genetics
HTML
•15•12•0•1•Updated Jul 6, 2021Jul 6, 2021
TensorFlow-Bayes
Public
Examples of TensorFlow for Bayesian inference
Python
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Apache License 2.0
•6•0•0•0•Updated Jan 13, 2020Jan 13, 2020