Papers by Alexios Polidoros
BACKGROUND: Studies were carried out to elucidate the mechanism of resistance to ALS-inhibiting h... more BACKGROUND: Studies were carried out to elucidate the mechanism of resistance to ALS-inhibiting herbicides in 29 Echinochloa accessions from water-seeded rice fields of northern Greece and to discriminate the Echinochloa species. RESULTS: Two E. oryzicola accessions were found to be cross-resistant to penoxsulam, bispyribac-sodium, imazamox, foramsulfuron, nicosulfuron and rimsulfuron, whereas all accessions were susceptible (S) to profoxydim. Sequencing of the ALS gene revealed that resistant (R) accessions had a Trp574Leu mutation, which was also confirmed by TspRI endonuclease digestion. Use of cpDNA sequence comparison analysis of Echinochloa species discriminated successfully E. crus-galli and E. oryzicola accessions.
Plant Physiology and Biochemistry, 2009
The isolation and characterization of AcSERK2, another somatic embryogenesis receptor-like kinase... more The isolation and characterization of AcSERK2, another somatic embryogenesis receptor-like kinase (SERK) gene homolog, confirmed that there was a SERK gene family in pineapple. AcSERK2 shared high similarity to AcSERK1 and other SERKs, containing all the characteristic domains of the SERK family. The expressed recombinant protein of pET-AcSERK2 was soluble. AcSERK2 expression was effectively induced by 2,4-dichlorophenoxyacetic acid (2,4-D) and maintained in high level at the early stage of somatic embryogenesis (SE). The results of in situ hybridization showed that AcSERK2 expressed at high level in the competent cells under the induction of 2, 4-D and at low level during the development of meristematic center to globular embryo. This indicated that AcSERK2 could be used as a potential marker gene to monitor the acquisition of embryogenic competence. However, AcSERK2 expression was also detected in all the tested organs and the expression level decreased along with the development of calyx, ovule and ovary. These results suggested that AcSERK2 maybe play a broader role in organ development. AcSERK2 transcription could be induced by exogenous hormones and abiotic stress. It was deduced that AcSERK2 may participate in response to exogenous hormones and abiotic stress regulation in pineapple. The expression pattern of AcSERK2 during SE differed from that of AcSERK1, and this indicated that the SERK genes may be non-redundant in somatic embryogenesis.
Biologia Plantarum, 2009
In this study we examined the genetic diversity and geographic scale of genotype distribution wit... more In this study we examined the genetic diversity and geographic scale of genotype distribution within the model legume species Medicago truncatula widely distributed in pasture and marginal agricultural lands in Greece and other Mediterranean countries. Thirty one Medicago truncatula and Medicago littorialis accessions were chosen on the basis of their geographical distributions and studied using 9 polymorphic simple sequence repeats (SSR) markers. The number of alleles per locus varied between 3 and 7. A total of 42 alleles were detected with a mean value of 4.66 alleles per locus. Geographic origin was not related with genotypic similarity among accessions. However, there were instances of close genetic relatedness between accessions from neighboring locations in a geographic compartment. In conclusion, the presented data revealed extensive M. truncatula genotype dispersal in Greece pointing to the significance of preserving local genetic resources in their natural environment.
In the wake of the …, 2005
Higher organisms, including plants, use three systems to initiate and sustain epigenetic gene reg... more Higher organisms, including plants, use three systems to initiate and sustain epigenetic gene regulation: DNA methylation, histone modification and RNA-interference. Unraveling the relationships between these epigenetic components has led to surprising and rapidly evolving new concepts, showing how they interact and stabilize each other. These interacting systems can regulate expression or silencing of genes, resulting in epigenetically controlled phenotypes that can be meiotically or mitotically heritable. In this review we discuss issues relevant to the involvement of epigenetic inheritance as a source of polymorphism generating useful variation for selecting superior genotypes. The role of methylation in hybrid vigor and stability of performance, and aspects of epigenetic transgene silencing in elite transgenic varieties will also be addressed.
Biologia Plantarum, 2005
We have cloned and characterized the expression of Crocus sativus AGAMOUS1 (CsAG1), a putative C-... more We have cloned and characterized the expression of Crocus sativus AGAMOUS1 (CsAG1), a putative C-type MADS-box gene homologous to AGAMOUS (AG) from a triploid monocot species crocus (Crocus sativus L.). The typical domain structure of MIKC-type plant MADS proteins was identified. Phylogenetic analysis of the deduced amino acid sequence indicated that the isolated gene forms a clade with the AGAMOUS homologs from the monocots Hyacinthus orientalis and Phalaenopsis equestris. A differential splicing event altering the amino acid sequence at the C terminus was identified, leading to the formation of two mRNAs differing ten nucleotides in size. The presence of both differentially spliced transcripts was restricted only to mature crocus flowers and particularly to stamens and carpels.
Transgenic Research, 2001
Transgenic tobacco genotypes expressing the maize Cat2 gene were developed with altered catalase ... more Transgenic tobacco genotypes expressing the maize Cat2 gene were developed with altered catalase (CAT) levels that resulted in a moderate increase of CAT activity in two transgenic lines. Bacterial infection, with a pathogen that does not share homology with the transgene, caused local and systemic down-regulation of the steady state mRNA levels of the 35S-driven transgene in a manner resembling post-transcriptional gene silencing (PTGS). Phenotypic symptoms of hypersensitive response (HR) and systemic acquired resistance (SAR) were similar in control SR1 and the transgenic genotypes. Induction of hin1, used as a molecular marker of plant responses to invading bacteria, displayed a similar pattern between control and transgenic lines, but some variation in the levels of expression was observed. The major difference was recorded in the ability of the plants to restrict bacterial growth during HR. All transgenic lines were more sensitive than control SR1, with two lines exhibiting a significantly reduced capacity to inhibit bacterial growth. This is consistent with the putative enhanced capacity of transgenic lines containing the maize Cat2 gene to more effectively remove H2O2, which may act as a direct antimicrobial agent. Steady state mRNA levels of PR-1 and PR-5 varied among the genotypes, possibly indicating differences in strength of the SAR signal. Transgenic line 2, which was the most sensitive during HR, was most effective in restricting bacterial growth during SAR. This indicates that a reverse correlation might exist between the severity of infection during HR and the ability to inhibit bacterial growth during SAR. Growth under high light conditions affected plant-pathogen interactions in control SR1, as well as in transgenic line 8. Early induction and higher expression of PR-1 and PR-5 was detected in both SR1 and line 8 in high light-grown plants as compared with their low light-grown counterparts. Our data indicate that growth under high light conditions can predispose plants to better resist pathogen attack, and may amplify local and systemic defense signals. Finally, one transgenic line, which exhibited 1.3-fold higher average CAT activity in comparison with the untransformed SR1 control, suffered significantly less methyl viologen (MV) damage than untransformed control plants at moderate and high MV concentrations.
Journal of agronomy …, 2009
Journal of Plant Physiology, 2011
To further understand flowering and flower organ formation in the monocot crop saffron crocus (Cr... more To further understand flowering and flower organ formation in the monocot crop saffron crocus (Crocus sativus L.), we cloned four MIKCc type II MADS-box cDNA sequences of the E-class SEPALLATA3 (SEP3) subfamily designated CsatSEP3a/b/c/c_as as well as the three respective genomic sequences. Sequence analysis showed that cDNA sequences of CsatSEP3 c and c_as are the products of alternative splicing of the CsatSEP3c gene. Bioinformatics analysis with putative orthologous sequences from various plant species suggested that all four cDNA sequences encode for SEP3-like proteins with characteristic motifs and amino acids, and highlighted intriguing sequence features. Phylogenetically, the isolated sequences were closest to the SEP3-like genes from monocots such as Asparagus virgatus, Oryza sativa, Zea mays, and the dicot Arabidopsis SEP3 gene. All four isolated C. sativus sequences were strongly expressed in flowers and in all flower organs: whorl1 tepals, whorl2 tepals, stamens and carpels, but not in leaves. Expression of CsatSEP3a/b/c/c_as cDNAs was compared in wild-type and mutant flowers. Expression of the isolatedCsatSEP3-like genes in whorl1 tepals together with E-class CsatAP1/FUL subfamily and B-class CsatAP3 and CsatPI subfamilies of genes, fits the ABCE “quartet model,” an extended form of the original ABC model proposed to explain the homeotic transformation of whorl1 sepals into whorl1 tepals in Liliales and Asparagales plants such as C. sativus. This conclusion was also supported by the interaction of the CsatSEP3b protein with CsatAP1/FUL and CsatAP3 proteins. In contrast, expression of both B-class CsatAP3 and CsatPI genes and the C-class CsatAGAMOUS genes together with E-class CsatSEP3-like genes in carpels, without any phenotypic effects on carpels, raises questions about the role of these gene classes in carpel formation in this non-grass monocot and requires further experimentation. Finally, taking advantage of the size and sequence differences in amplified genomic sequences of the triploid C. sativus and comparing them with the respective sequences from C. tomasii, C. hadriaticus and C. cartwrightianus, three putative wild-type diploid progenitor species, we examined the origin of CsatSEP3a sequence.
Electronic Journal of Biotechnology, 2008
Plant Physiology and …, 2009
a b s t r a c t MADS-box genes encode transcriptional regulators that are critical for flowering,... more a b s t r a c t MADS-box genes encode transcriptional regulators that are critical for flowering, flower organogenesis and plant development. Although there are extensive reports on genes involved in flower organogenesis in model and economically important plant species, there are few reports on MADS-box genes in woody plants. In this study, we have cloned and characterized AGAMOUS (AG), SEEDSTICK (STK) and SEPALLATA (SEP) homologs from peach tree (Prunus persica L. Batsch) and studied their expression patterns in different tissues as well as in fruit pericarp during pit hardening. AG-STK-and SEP-like homologs, representative of the C-, D-, E-like MADS-box gene lineages, respectively, play key roles in stamen, carpel, ovule and fruit development in Arabidopsis thaliana. Sequence similarities, phylogenetic analysis and structural characteristics were used to provide classification of the isolated genes in type C (PPERAG), type D (PPERSTK) and type E (PPERSEP1, PPERSEP3, PPERFB9) organ identity genes. Expression patterns were determined and in combination with phylogenetic data provided useful indications on the function of these genes. These data suggest the involvement of MADS-box genes in peach flower and fruit development and provide further evidence for the role of these genes in woody perennial trees that is compatible with their function in model plant species.
Plant Physiology and Biochemistry, 2011
Extensive studies on the dry fruits of the model plant arabidopsis (Arabidopsis thaliana) have re... more Extensive studies on the dry fruits of the model plant arabidopsis (Arabidopsis thaliana) have revealed various gene regulators of the development and dehiscence of the siliques. Peach pericarp is analogous to the valve tissues of the arabidopsis siliques. The stone (otherwise called pit) in drupes is formed through lignification of the fruit endocarp. The lignified endocarp in peach can be susceptible to split-pit formation under certain genetic as well as environmental factors. This phenomenon delays processing of the clingstone varieties of peach and causes economical losses for the peach fruit canning industry. The FRUITFULL (FUL) and SHATTERPROOF (SHP) genes are key MADS-box transcription protein coding factors that control fruit development and dehiscence in arabidopsis by promoting the expression of basic helix-loop-helix (bHLH) transcription factors like SPATULA (SPT) and ALCATRAZ (ALC). Results from our previous studies on peach suggested that temporal regulation of PPERFUL and PPERSHP gene expression may be involved in the regulation of endocarp margin development. In the present study a PPERSPATULA-like (PPERSPT) gene was cloned and characterized. Comparative analysis of temporal regulation of PPERSPT gene expression during pit hardening in a resistant and a susceptible to split-pit variety, suggests that this gene adds one more component to the genes network that controls endocarp margins development in peach. Taking into consideration that no ALC-like genes have been identified in any dicot plant species outside the Brassicaceae family, where arabidopsis belongs, PPERSPT may have additional role(s) in peach that are fulfilled in arabidopsis by ALC.► PPERSPT, a SPATULA-like bHLH transcription factor in peach. ► PPERSPT gene expression in a resistant and a susceptible variety to split-pit. ► PPERSPT may have additional roles in peach fulfilled by ALC in arabidopsis.
Physiologia …, 2009
Olive (Olea europaea L.) trees are mainly propagated by adventitious rooting of semi-hardwood cut... more Olive (Olea europaea L.) trees are mainly propagated by adventitious rooting of semi-hardwood cuttings. However, efficient commercial propagation of valuable olive tree cultivars or landraces by semi-hardwood cuttings can often be restricted by a low rooting capacity. We hypothesize that root induction is a plant cell reaction linked to oxidative stress and that activity of stress-induced alternative oxidase (AOX) is importantly involved in adventitious rooting. To identify AOX as a source for potential functional marker sequences that may assist tree breeding, genetic variability has to be demonstrated that can affect gene regulation. The paper presents an applied, multidisciplinary research approach demonstrating first indications of an important relationship between AOX activity and differential adventitious rooting in semi-hardwood cuttings. Root induction in the easy-to-root Portuguese cultivar ‘Cobrançosa’ could be significantly reduced by treatment with salicyl-hydroxamic acid, an inhibitor of AOX activity. On the contrary, treatment with H2O2 or pyruvate, both known to induce AOX activity, increased the degree of rooting. Recently, identification of several O. europaea (Oe) AOX gene sequences has been reported from our group. Here we present for the first time partial sequences of OeAOX2. To search for polymorphisms inside of OeAOX genes, partial OeAOX2 sequences from the cultivars ‘Galega vulgar’, ‘Cobrançosa’ and ‘Picual’ were cloned from genomic DNA and cDNA, including exon, intron and 3′-untranslated regions (3′-UTRs) sequences. The data revealed polymorphic sites in several regions of OeAOX2. The 3′-UTR was the most important source for polymorphisms showing 5.7% of variability. Variability in the exon region accounted 3.4 and 2% in the intron. Further, analysis performed at the cDNA from microshoots of ‘Galega vulgar’ revealed transcript length variation for the 3′-UTR of OeAOX2 ranging between 76 and 301 bp. The identified polymorphisms and 3′-UTR length variation can be explored in future studies for effects on gene regulation and a potential linkage to olive rooting phenotypes in view of marker-assisted plant selection.
Mitochondrial …, 2007
For uncovering and understanding the molecular mechanisms controlling flower development in culti... more For uncovering and understanding the molecular mechanisms controlling flower development in cultivated Crocus sativus and particularly the transformation of sepals in outer whorl (whorl 1) tepals, we have cloned and characterized the expression of a family of five PISTILLATA/GLOBOSA-like (PI/GLO-like) MADS-box genes expressed in the C. sativus flower.
Thescientificworldjournal, 2007
Crocus (Crocus sativus L.) is a crop species cultivated for its flowers and, more specifically, f... more Crocus (Crocus sativus L.) is a crop species cultivated for its flowers and, more specifically, for its red stigmas. The flower of crocus is bisexual and sterile, since crocus is a triploid species. Its perianth consists of six petaloid tepals: three tepals in whorl 1 (outer tepals) and three tepals in whorl 2 (inner tepals). The androecium consists of three distinct stamens and the gynoecium consists of a single compound pistil with three carpels, a single three-branched style, and an inferior ovary. The dry form of the stigmas constitutes the commercial saffron used as a food additive, in the coloring industry, and in medicine. In order to uncover and understand the molecular mechanisms controlling flower development in cultivated crocus and its relative wild progenitor species, and characterize a number of crocus flower mutants, we have cloned and characterized different, full-length, cDNA sequences encoding MADS-box transcription factor proteins involved in flower formation.
Plant science, 2006
We have cloned and characterized the expression of two flower specific B-class APETALA3 -like (AP... more We have cloned and characterized the expression of two flower specific B-class APETALA3 -like (AP3-like) MADS-box sequences of cultivated crocus (Crocus sativus L). Based on sequencing data two sequences designated CsatAP3a and CsatAP3b could be distinguished. These were different in the 5 0 and 3 0 untranslated regions and had five single nucleotide differences in the coding region that led to a single amino acid difference in the coded protein. The deduced amino acid sequences of the genes indicated high similarity with members of the MADS-box family of transcription factors, and particularly with other members of the paleo-AP3 lineage of B-class MADS-box proteins that control floral organ identity. Phylogenetic analysis at the amino acid level confirmed that the isolated sequences belong to the monocot-specific paleoAP3 clade. In the sequence the typical domain structure of plant MADS box proteins was observed. The conserved N-terminal MADS-box, the I domain, the central K domain and a C terminal domain harboring a paleoAP3 motif were identified. Expression analysis indicated that transcripts of CsatAP3 and also an isolated PISTILLATA-like CsatPIc sequence are not restricted to organs of the second and third whorls of the flowers but are present also in the tepals of the first whorl and stigmata of the mature crocus flower of the fourth whorl. Extension of CsatAP3 and CsatPIc expression in organs of the first whorl could be a supportive evidence to explain the homeotic transformation of sepals into tepals in crocus. #
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Papers by Alexios Polidoros