Super-resolution in situ analysis of active ribosomal DNA chromatin organization in the nucleolus (Q94521402)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32366902%20AND%20SRC:MED&resulttype=core&format=json

15 May 2020

title

Super-resolution in situ analysis of active ribosomal DNA chromatin organization in the nucleolus (English)

1 reference

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15 May 2020

4

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15 May 2020

Heinrich Leonhardt

5

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15 May 2020

author name string

Andreas Maiser

1

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15 May 2020

Stefan Dillinger

2

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15 May 2020

Gernot Längst

3

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15 May 2020

Attila Németh

6

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15 May 2020

publication date

4 May 2020

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15 May 2020

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15 May 2020

volume

10

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15 May 2020

issue

1

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15 May 2020

page(s)

7462

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Nascent Pre-rRNA Sorting via Phase Separation Drives the Assembly of Dense Fibrillar Components in the Human Nucleolus

15 May 2020

cites work

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Two contrasting classes of nucleolus-associated domains in mouse fibroblast heterochromatin

11 February 2021

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The chromatin landscape of the ribosomal RNA genes in mouse and human

11 February 2021

1 reference

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Super-resolution microscopy demystified

11 February 2021

1 reference

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Visualizing and discovering cellular structures with super-resolution microscopy

11 February 2021

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Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing

11 February 2021

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qSR: a quantitative super-resolution analysis tool reveals the cell-cycle dependent organization of RNA Polymerase I in live human cells.

11 February 2021

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Imaging the dynamics of transcription loops in living chromosomes

11 February 2021

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New Roles for the Nucleolus in Health and Disease

11 February 2021

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Regulation of RNA Polymerase I Transcription in Development, Disease, and Aging

11 February 2021

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Dynamic regulation of nucleolar architecture.

11 February 2021

1 reference

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Image co-localization - co-occurrence versus correlation.

11 February 2021

1 reference

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Ribosome biogenesis in cancer: new players and therapeutic avenues

11 February 2021

1 reference

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The ribosomal DNA metaphase loop of Saccharomyces cerevisiae gets condensed upon heat stress in a Cdc14-independent TORC1-dependent manner

11 February 2021

1 reference

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A Deconvolution Protocol for ChIP-Seq Reveals Analogous Enhancer Structures on the Mouse and Human Ribosomal RNA Genes.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

A unique enhancer boundary complex on the mouse ribosomal RNA genes persists after loss of Rrn3 or UBF and the inactivation of RNA polymerase I transcription

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Nucleolus association of chromosomal domains is largely maintained in cellular senescence despite massive nuclear reorganisation.

11 February 2021

1 reference

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Strategic and practical guidelines for successful structured illumination microscopy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Quantitative 3D structured illumination microscopy of nuclear structures.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Nucleophosmin: from structure and function to disease development

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Reproduction of the FC/DFC units in nucleoli

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

SIMcheck: a Toolbox for Successful Super-resolution Structured Illumination Microscopy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Active human nucleolar organizer regions are interspersed with inactive rDNA repeats in normal and tumor cells.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Construction of synthetic nucleoli and what it tells us about propagation of sub-nuclear domains through cell division.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

A novel role for the Pol I transcription factor UBTF in maintaining genome stability through the regulation of highly transcribed Pol II genes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

An overview of pre-ribosomal RNA processing in eukaryotes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Systematic characterization of the conformation and dynamics of budding yeast chromosome XII.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Chromatin states at ribosomal DNA loci

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Fluorescence in situ hybridization applications for super-resolution 3D structured illumination microscopy.

11 February 2021

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Epigenetic control of RNA polymerase I transcription in mammalian cells

11 February 2021

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Superresolution imaging of transcription units on newt lampbrush chromosomes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Assembly and disassembly of the nucleolus during the cell cycle

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Integrative genomic analysis of human ribosomal DNA

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

A model for the topology of active ribosomal RNA genes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

A three-dimensional model of the yeast genome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

c-Myc induces changes in higher order rDNA structure on stimulation of quiescent cells

11 February 2021

1 reference

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Pseudo-NORs: a novel model for studying nucleoli

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Targeting and tracing antigens in live cells with fluorescent nanobodies

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

The nucleolus and transcription of ribosomal genes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Automatic and quantitative measurement of protein-protein colocalization in live cells.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Complete sequence of the 45-kb mouse ribosomal DNA repeat: analysis of the intergenic spacer☆

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

A functional screen in human cells identifies UBF2 as an RNA polymerase II transcription factor that enhances the beta-catenin signaling pathway

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Three-dimensional organization of active rRNA genes within the nucleolus

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

DNA looping in the RNA polymerase I enhancesome is the result of non-cooperative in-phase bending by two UBF molecules

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Functional differences between the two splice variants of the nucleolar transcription factor UBF: the second HMG box determines specificity of DNA binding and transcriptional activity.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Complete sequence of the 43-kb human ribosomal DNA repeat: analysis of the intergenic spacer

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

The dimensions of DNA in solution

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Visualization of Nucleolar Genes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

3'-End formation of transcripts from the yeast rRNA operon

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

Ribosomal DNA sequences attached to the nuclear matrix

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7198602

10.1038/S41598-020-64589-X

11 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32366902%20AND%20SRC:MED&resulttype=core&format=json

15 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32366902%20AND%20SRC:MED&resulttype=core&format=json

15 May 2020

PubMed publication ID

32366902

1 reference