Recruitment of σ54-RNA Polymerase to thePuPromoter ofPseudomonas putidathrough Integration Host Factor-mediated Positioning Switch of α Subunit Carboxyl-terminal Domain on an UP-like Element (Q57936045)

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scientific article published in Journal of Biological Chemistry

Language	Label	Description	Also known as
English	Recruitment of σ54-RNA Polymerase to thePuPromoter ofPseudomonas putidathrough Integration Host Factor-mediated Positioning Switch of α Subunit Carboxyl-terminal Domain on an UP-like Element	scientific article published in Journal of Biological Chemistry

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scholarly article

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Recruitment of σ54-RNA Polymerase to thePuPromoter ofPseudomonas putidathrough Integration Host Factor-mediated Positioning Switch of α Subunit Carboxyl-terminal Domain on an UP-like Element (English)

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Giovanni Bertoni

object named as

Giovanni Bertoni

6

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Victor de Lorenzo

object named as

Víctor de Lorenzo

5

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author name string

Raffaella Macchi

1

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Lorena Montesissa

2

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Katsuhiko Murakami

3

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Akira Ishihama

4

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language of work or name

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publication date

16 May 2003

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Journal of Biological Chemistry

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278

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30

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27695-27702

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Functional modulation of Escherichia coli RNA polymerase

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A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

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Fine structure of E. coli RNA polymerase-promoter interactions: alpha subunit binding to the UP element minor groove

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Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

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Identification of an UP element consensus sequence for bacterial promoters

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Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

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Interaction of the C-terminal domain of the E. coli RNA polymerase alpha subunit with the UP element: recognizing the backbone structure in the minor groove surface

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RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates

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Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strength

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Promoter recognition by Escherichia coli RNA polymerase: effects of the UP element on open complex formation and promoter clearance

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UP element-dependent transcription at the Escherichia coli rrnB P1 promoter: positional requirements and role of the RNA polymerase alpha subunit linker.

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Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent

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Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors

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Transcription activation at promoters carrying tandem DNA sites for the Escherichia coli cyclic AMP receptor protein: organisation of the RNA polymerase alpha subunits

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Protein–Protein Contacts that Activate and Repress Prokaryotic Transcription

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Flexible linker in the RNA polymerase alpha subunit facilitates the independent motion of the C-terminal activator contact domain.

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Promoter architecture in the flagellar regulon of Bacillus subtilis: high-level expression of flagellin by the sigma D RNA polymerase requires an upstream promoter element

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Active recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and alphaCTD.

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Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators

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The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

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Transcriptional regulation at a distance in bacteria

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In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N).

1 reference

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Specific binding of the transcription factor sigma-54 to promoter DNA

1 reference

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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

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Mechanochemical ATPases and transcriptional activation.

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Recruitment of RNA polymerase is a rate-limiting step for the activation of the sigma(54) promoter Pu of Pseudomonas putida.

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A general system to integrate lacZ fusions into the chromosomes of gram-negative eubacteria: regulation of the Pm promoter of the TOL plasmid studied with all controlling elements in monocopy.

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Involvement of sigma 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter.

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The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element

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57 Sequencing end-labeled DNA with base-specific chemical cleavages

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Determinants of RNA polymerase alpha subunit for interaction with beta, beta', and sigma subunits: hydroxyl-radical protein footprinting

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Upstream A-tracts increase bacterial promoter activity through interactions with the RNA polymerase alpha subunit

1 reference

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Physical and Functional Analysis of the Prokaryotic Enhancer of the σ54-promoters of the TOL Plasmid ofPseudomonas putida

1 reference

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Structural requirements for the interdomain linker of alpha subunit of Escherichia coli RNA polymerase

1 reference

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Signaling through sigma

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Identifiers

10.1074/JBC.M303031200

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