iPro70-FMWin: identifying Sigma70 promoters using multiple windowing and minimal features (Q57927521)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

title

iPro70-FMWin: identifying Sigma70 promoters using multiple windowing and minimal features (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

author name string

Md Siddiqur Rahman

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

Usma Aktar

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

Md Rafsan Jani

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

language of work or name

English

0 references

publication date

5 September 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

Molecular Genetics and Genomics

21 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

volume

294

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

page(s)

69-84

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

Neural network optimization for E. coli promoter prediction

21 April 2020

cites work

1 reference

12 December 2020

The box plot: a simple visual method to interpret data

1 reference

12 December 2020

Neural network models for promoter recognition.

1 reference

12 December 2020

Letter: Letter: Nucleotide distribution in bacterial DNA's differing in G plus C content

1 reference

12 December 2020

The meaning and use of the area under a receiver operating characteristic (ROC) curve

1 reference

12 December 2020

Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.

1 reference

12 December 2020

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

12 December 2020

Eukaryotic Promoter Recognition

1 reference

12 December 2020

Detection of eukaryotic promoters using Markov transition matrices.

1 reference

12 December 2020

DNA binding sites: representation and discovery

1 reference

12 December 2020

Prediction of protein cellular attributes using pseudo-amino acid composition

1 reference

12 December 2020

Using subsite coupling to predict signal peptides

1 reference

12 December 2020

Prediction of signal peptides using scaled window

1 reference

12 December 2020

Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

1 reference

12 December 2020

Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

1 reference

12 December 2020

Sequence alignment kernel for recognition of promoter regions

1 reference

12 December 2020

Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes

1 reference

12 December 2020

Improved prediction of bacterial transcription start sites

1 reference

12 December 2020

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

1 reference

12 December 2020

The recognition and prediction of sigma70 promoters in Escherichia coli K-12.

1 reference

12 December 2020

Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach

1 reference

12 December 2020

Genome-wide analysis of chlamydiae for promoters that phylogenetically footprint

1 reference

12 December 2020

High-resolution mapping and characterization of open chromatin across the genome

1 reference

12 December 2020

The cross-species prediction of bacterial promoters using a support vector machine

1 reference

12 December 2020

An iterative strategy combining biophysical criteria and duration hidden Markov models for structural predictions of Chlamydia trachomatis sigma66 promoters

1 reference

12 December 2020

Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70

1 reference

12 December 2020

Eukaryotic and prokaryotic promoter prediction using hybrid approach.

1 reference

12 December 2020

Some remarks on protein attribute prediction and pseudo amino acid composition

1 reference

12 December 2020

Recognition of prokaryotic promoters based on a novel variable-window Z-curve method

1 reference

12 December 2020

How to apply de Bruijn graphs to genome assembly

1 reference

12 December 2020

A comparison study on feature selection of DNA structural properties for promoter prediction

1 reference

12 December 2020

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

1 reference

12 December 2020

Some remarks on predicting multi-label attributes in molecular biosystems

1 reference

12 December 2020

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination

1 reference

12 December 2020

DNA duplex stability as discriminative characteristic for Escherichia coli σ(54)- and σ(28)- dependent promoter sequences

1 reference

12 December 2020

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

1 reference

12 December 2020

PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition

1 reference

12 December 2020

A framework for the interpretation of de novo mutation in human disease

1 reference

12 December 2020

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

1 reference

12 December 2020

Impacts of bioinformatics to medicinal chemistry

1 reference

12 December 2020

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

1 reference

12 December 2020

Application of high-dimensional feature selection: evaluation for genomic prediction in man

1 reference

12 December 2020

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

1 reference

12 December 2020

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.

1 reference

12 December 2020

An expanded sequence context model broadly explains variability in polymorphism levels across the human genome

1 reference

12 December 2020

Identification of immunoglobulins using Chou's pseudo amino acid composition with feature selection technique

1 reference

12 December 2020

Identification of Bacterial Cell Wall Lyases via Pseudo Amino Acid Composition.

1 reference

12 December 2020

Identification of Secretory Proteins in Mycobacterium tuberculosis Using Pseudo Amino Acid Composition

1 reference

12 December 2020

iOri-Human: identify human origin of replication by incorporating dinucleotide physicochemical properties into pseudo nucleotide composition

1 reference

12 December 2020

Pro54DB: a database for experimentally verified sigma-54 promoters

1 reference

12 December 2020

Identifying sigma70 promoters with novel pseudo nucleotide composition.

1 reference

12 December 2020

An Unprecedented Revolution in Medicinal Chemistry Driven by the Progress of Biological Science

1 reference

12 December 2020

iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC.

1 reference

12 December 2020

Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC.

1 reference

12 December 2020

iDTI-ESBoost: Identification of Drug Target Interaction Using Evolutionary and Structural Features with Boosting.

1 reference

12 December 2020

iMem-2LSAAC: A two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into chou's pseudo amino acid composition

1 reference

12 December 2020

iDNA6mA-PseKNC: Identifying DNA N6-methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC.

1 reference

12 December 2020

Prediction of HIV-1 and HIV-2 proteins by using Chou's pseudo amino acid compositions and different classifiers

1 reference

12 December 2020

Using Chou's general PseAAC to analyze the evolutionary relationship of receptor associated proteins (RAP) with various folding patterns of protein domains

1 reference

12 December 2020

Analysis and prediction of presynaptic and postsynaptic neurotoxins by Chou's general pseudo amino acid composition and motif features.

1 reference

12 December 2020

iRO-3wPseKNC: identify DNA replication origins by three-window-based PseKNC

1 reference

12 December 2020

Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC

1 reference

12 December 2020

DPP-PseAAC: A DNA-binding protein prediction model using Chou's general PseAAC

1 reference

12 December 2020

iRNA-3typeA: Identifying Three Types of Modification at RNA's Adenosine Sites.

1 reference

12 December 2020

Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC

1 reference

12 December 2020

iEnhancer-EL: identifying enhancers and their strength with ensemble learning approach

1 reference

12 December 2020

iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC

1 reference

12 December 2020

iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC.

1 reference

12 December 2020

HBPred: a tool to identify growth hormone-binding proteins.

1 reference

12 December 2020

iPromoter-FSEn: Identification of bacterial σ promoter sequences using feature subspace based ensemble classifier

1 reference

12 December 2020

10.1007/S00438-018-1487-5

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30187132%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

1 reference