Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum (Q48064573)

From Wikidata

Jump to navigation Jump to search

scientific article published on 3 June 2010

Language	Label	Description	Also known as
English	Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum	scientific article published on 3 June 2010

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum (English)

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

13

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

author name string

Abhijit Sanyal

1

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Jetty S S Ammiraju

2

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Fei Lu

3

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Yeisoo Yu

4

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Teri Rambo

5

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Jennifer Currie

6

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Kristi Kollura

7

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Hye-Ran Kim

8

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Jinfeng Chen

9

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Jianxin Ma

10

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Phillip San Miguel

11

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Chen Mingsheng

12

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Scott A Jackson

14

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

publication date

3 June 2010

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Molecular Biology and Evolution

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

27

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

11

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

2487-2506

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The Arabidopsis thaliana SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASES1 and 2 control male sporogenesis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Automated de novo identification of repeat sequence families in sequenced genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Mechanisms and rates of genome expansion and contraction in flowering plants.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Patterns in grass genome evolution

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Mechanisms of recent genome size variation in flowering plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Alien introgression in rice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

An integrated physical and genetic map of the rice genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Toward a cytological characterization of the rice genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Updating the 'crop circle'.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The paradox of functional heterochromatin

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Phylogenetic analysis of AA-genome Oryza species (Poaceae) based on chloroplast, mitochondrial, and nuclear DNA sequences

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Plant transposable elements: where genetics meets genomics

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Horizontal transfer of transposable elements in plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Phylogeny of rice genomes with emphasis on origins of allotetraploid species

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

A phylogenetic analysis of indel dynamics in the cotton genus

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Conserved Noncoding Sequences among Cultivated Cereal Genomes Identify Candidate Regulatory Sequence Elements and Patterns of Promoter Evolution[W]

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Evaluation of next generation sequencing platforms for population targeted sequencing studies

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Phylogeny estimation: traditional and Bayesian approaches

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

High-throughput genotyping by whole-genome resequencing.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The map-based sequence of the rice genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

ComboScreen facilitates the multiplex hybridization-based screening of high-density clone arrays

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

An active DNA transposon family in rice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Repbase Update, a database of eukaryotic repetitive elements

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Origin, dispersal, cultivation and variation of rice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Alternative splicing: current perspectives

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

New insights into the history of rice domestication

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The evolutionary fate and consequences of duplicate genes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Rapid recent growth and divergence of rice nuclear genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The impact of next-generation sequencing technology on genetics

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

LTR_STRUC: a novel search and identification program for LTR retrotransposons

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The Sorghum bicolor genome and the diversification of grasses

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

MODELTEST: testing the model of DNA substitution

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Microarray expression profiling resources for plant genomics

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The Rice Annotation Project Database (RAP-DB): 2008 update

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Ab initio gene finding in Drosophila genomic DNA

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The paleontology of intergene retrotransposons of maize

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Nested retrotransposons in the intergenic regions of the maize genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

International Rice Genome Sequencing Project: the effort to completely sequence the rice genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Next-generation DNA sequencing

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Mosaic organization of orthologous sequences in grass genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Coevolution of Grasses and Herbivores

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Long-range physical maps of two loci (Aps-1 and GP79) flanking the root-knot nematode resistance gene (Mi) near the centromere of tomato chromosome 6.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Next-generation sequencing technologies and their implications for crop genetics and breeding

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Diversity in the Oryza genus

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Genome evolution in polyploids

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Analysis of 142 genes resolves the rapid diversification of the rice genus

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Transposable element distribution, abundance and role in genome size variation in the genus Oryza

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

The evolution of nuclear genome structure in seed plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSQ133

21 January 2018

Identifiers

10.1093/MOLBEV/MSQ133

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/20522726

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q48064573&oldid=2183645828"