Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber (Q47984099)

7 February 2018

title

Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber (English)

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7 February 2018

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Colin Logie

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author name string

Maarten Kruithof

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Fan-Tso Chien

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Daniela Rhodes

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John van Noort

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publication date

19 April 2009

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7 February 2018

Nature Structural & Molecular Biology

published in

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volume

16

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issue

5

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page(s)

534-540

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7 February 2018

Crystal structure of the nucleosome core particle at 2.8 Å resolution

cites work

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Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones

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Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

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Structure of the 300A chromatin filament: X-ray diffraction from oriented samples

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Toward a unified model of chromatin folding

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Higher-order structures of chromatin: the elusive 30 nm fiber

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Structure of the '30 nm' chromatin fibre: a key role for the linker histone

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Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin

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Neuronal nuclei and glial nuclei from mammalian cerebral cortex. Nucleosome repeat lengths, DNA contents and H1 contents

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Histories H1 and H5: one or two molecules per nucleosome?

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Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length

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An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length

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X-ray structure of a tetranucleosome and its implications for the chromatin fibre

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Nucleosome arrays reveal the two-start organization of the chromatin fiber

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Nucleosome arcs and helices

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Cryo-electron microscopy of vitrified SV40 minichromosomes: the liquid drop model.

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New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

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A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone

31 March 2020

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EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure

31 March 2020

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Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers.

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Histone octamer instability under single molecule experiment conditions.

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Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

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Structural plasticity of single chromatin fibers revealed by torsional manipulation

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Nucleosome chiral transition under positive torsional stress in single chromatin fibers

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Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics

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Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure

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Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure

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A statistical thermodynamic model applied to experimental AFM population and location data is able to quantify DNA-histone binding strength and internucleosomal interaction differences between acetylated and unacetylated nucleosomal arrays

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Subpiconewton dynamic force spectroscopy using magnetic tweezers

31 March 2020

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Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

31 March 2020

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30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction

31 March 2020

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Effect of Poly(ADP-ribosyl)ation and Mg2+Ions on Chromatin Structure Revealed by Scanning Force Microscopy†

31 March 2020

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Cation-chromatin binding as shown by ion microscopy is essential for the structural integrity of chromosomes

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Effect of force on mononucleosomal dynamics

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Spontaneous access to DNA target sites in folded chromatin fibers

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A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells

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Stability of the Higher-Order Structure of Chicken-Erythrocyte Chromatin in Solution

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Computer simulation of the 30-nanometer chromatin fiber.

31 March 2020

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Electrostatic mechanism of nucleosomal array folding revealed by computer simulation

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Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation

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Variation in chromatin structure in two cell types from the same tissue: a short DNA repeat length in cerebral cortex neurons

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Force and velocity measured for single molecules of RNA polymerase.

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NSMB.1590

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7 February 2018

Dimensions Publication ID

1034976085

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Fatcat ID

release_aynhibt4czag7evukkmyejid5e

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7 February 2018