Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize. (Q46271708)

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8 April 2020

title

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize (English)

1 reference

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8 April 2020

author

Stefanie Dukowic-Schulze

3

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8 April 2020

Edward Buckler

11

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8 April 2020

author name string

Yan He

1

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8 April 2020

Minghui Wang

2

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8 April 2020

Adele Zhou

4

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8 April 2020

Choon-Lin Tiang

5

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Shay Shilo

6

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8 April 2020

Gaganpreet K Sidhu

7

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8 April 2020

Steven Eichten

8

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8 April 2020

Peter Bradbury

9

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8 April 2020

Nathan M Springer

10

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8 April 2020

Avraham A Levy

12

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8 April 2020

Qi Sun

13

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8 April 2020

Jaroslaw Pillardy

14

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8 April 2020

Penny M A Kianian

15

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Shahryar F Kianian

16

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8 April 2020

Changbin Chen

17

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8 April 2020

Wojciech P Pawlowski

18

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8 April 2020

language of work or name

English

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publication date

30 October 2017

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Proceedings of the National Academy of Sciences of the United States of America

8 April 2020

published in

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volume

114

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issue

46

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8 April 2020

page(s)

12231-12236

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Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates

8 April 2020

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The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair

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The TopoVIB-Like protein family is required for meiotic DNA double-strand break formation

10 July 2018

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A DNA topoisomerase VI-like complex initiates meiotic recombination

10 July 2018

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10 July 2018

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Inbreeding drives maize centromere evolution

10 July 2018

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Recombination patterns in maize reveal limits to crossover homeostasis

10 July 2018

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DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis.

10 July 2018

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Local and sex-specific biases in crossover vs. noncrossover outcomes at meiotic recombination hot spots in mice

10 July 2018

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DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination

10 July 2018

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Dissecting meiotic recombination based on tetrad analysis by single-microspore sequencing in maize

10 July 2018

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Recombination in diverse maize is stable, predictable, and associated with genetic load

10 July 2018

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DNA recombination. Recombination initiation maps of individual human genomes

10 July 2018

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Polarized gene conversion at the bz locus of maize

10 July 2018

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Evolutionarily diverse determinants of meiotic DNA break and recombination landscapes across the genome

10 July 2018

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Comparative analysis of genome-wide chromosomal histone modification patterns in maize cultivars and their wild relatives.

10 July 2018

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Sequencing-based large-scale genomics approaches with small numbers of isolated maize meiocytes.

10 July 2018

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The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana

10 July 2018

1 reference

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Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters

10 July 2018

1 reference

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Meiotic recombination initiation in and around retrotransposable elements in Saccharomyces cerevisiae

10 July 2018

1 reference

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Numerical constraints and feedback control of double-strand breaks in mouse meiosis

10 July 2018

1 reference

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Spreading of heterochromatin is limited to specific families of maize retrotransposons

10 July 2018

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Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation

10 July 2018

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Epigenetic remodeling of meiotic crossover frequency in Arabidopsis thaliana DNA methyltransferase mutants.

10 July 2018

1 reference

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Genetic recombination is directed away from functional genomic elements in mice

10 July 2018

1 reference

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The spatial regulation of meiotic recombination hotspots: are all DSB hotspots crossover hotspots?

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis

10 July 2018

1 reference

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Loss of DNA methylation affects the recombination landscape in Arabidopsis.

10 July 2018

1 reference

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Scale matters: the spatial correlation of yeast meiotic DNA breaks with histone H3 trimethylation is driven largely by independent colocalization at promoters

10 July 2018

1 reference

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Mouse PRDM9 DNA-binding specificity determines sites of histone H3 lysine 4 trimethylation for initiation of meiotic recombination

10 July 2018

1 reference

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Protection of repetitive DNA borders from self-induced meiotic instability

10 July 2018

1 reference

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Genome-wide analysis reveals novel molecular features of mouse recombination hotspots

10 July 2018

1 reference

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A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation

10 July 2018

1 reference

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Widespread gene conversion in centromere cores

10 July 2018

1 reference

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Centromeres convert but don't cross

10 July 2018

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

A first-generation haplotype map of maize

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

The B73 Maize Genome: Complexity, Diversity, and Dynamics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Genetic properties of the maize nested association mapping population

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Topoisomerase 3alpha and RMI1 suppress somatic crossovers and are essential for resolution of meiotic recombination intermediates in Arabidopsis thaliana

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

The Arabidopsis BLAP75/Rmi1 homologue plays crucial roles in meiotic double-strand break repair

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

A GeneTrek analysis of the maize genome

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Making crossovers during meiosis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Repbase Update, a database of eukaryotic repetitive elements

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

The single-end invasion: an asymmetric intermediate at the double-strand break to double-holliday junction transition of meiotic recombination

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Differential timing and control of noncrossover and crossover recombination during meiosis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Three-dimensional microscopy of the Rad51 recombination protein during meiotic prophase

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Genetic perturbation of the maize methylome

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Spatiotemporal asymmetry of the meiotic program underlies the predominantly distal distribution of meiotic crossovers in barley

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

Coordination of meiotic recombination, pairing, and synapsis by PHS1.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5699076

The recombinases DMC1 and RAD51 are functionally and spatially separated during meiosis in Arabidopsis

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29087335

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Crossing over as assessed by late recombination nodules is related to the pattern of synapsis and the distribution of early recombination nodules in maize

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29087335

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1713225114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29087335%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29087335%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

PubMed publication ID

29087335

1 reference