Assessment of bias associated with incomplete extraction of microbial DNA from soil. (Q43072037)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19561189%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

title

Assessment of bias associated with incomplete extraction of microbial DNA from soil (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19561189%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

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2

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1 February 2020

1

Larry M Feinstein

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1 February 2020

Christopher B. Blackwood

object named as

Christopher B Blackwood

series ordinal

3

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language of work or name

English

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publication date

26 June 2009

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19561189%20AND%20SRC:MED&resulttype=core&format=json

Applied and Environmental Microbiology

1 February 2020

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19561189%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

volume

75

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1 February 2020

issue

16

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1 February 2020

page(s)

5428-5433

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Where are all the undescribed fungi?

1 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Pyrosequencing enumerates and contrasts soil microbial diversity

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Comparative study of methods for extraction and purification of environmental DNA from soil and sludge samples

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Effect of different carbon sources on community composition of bacterial enrichments from soil

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Phylum- and class-specific PCR primers for general microbial community analysis

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Fungal community analysis by large-scale sequencing of environmental samples

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Microbial diversity and function in soil: from genes to ecosystems

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Molecular microbial diversity of an agricultural soil in Wisconsin

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: comparison of 18S and ITS ribosomal regions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

DNA extraction method affects microbial community profiles from soils and sediment.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Comparison of five commercial DNA extraction kits for the recovery of Francisella tularensis DNA from spiked soil samples

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Evaluation of real-time PCR amplification efficiencies to detect PCR inhibitors

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2725469

Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis

15 August 2018

1 reference

12 December 2020

A strategy for optimizing quality and quantity of DNA extracted from soil

1 reference

12 December 2020

Removal of PCR inhibitors from soil DNA by chemical flocculation

1 reference

12 December 2020

Improved purification and PCR amplification of DNA from environmental samples

1 reference

12 December 2020

Ecologically meaningful transformations for ordination of species data

1 reference

12 December 2020

Identifiers

DOI

10.1128/AEM.00120-09

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19561189%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

0 references

1 reference

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1 February 2020

PubMed publication ID

19561189

1 reference