Exploring the recognition of quadruplex DNA by an engineered Cys2-His2 zinc finger protein (Q42947825)

11 November 2017

Exploring the recognition of quadruplex DNA by an engineered Cys2-His2 zinc finger protein (English)

1 reference

11 November 2017

Sylvain Ladame

1

1 reference

11 November 2017

James A Schouten

2

1 reference

11 November 2017

Jose Roldan

3

1 reference

11 November 2017

James E Redman

4

1 reference

11 November 2017

Stephen Neidle

5

1 reference

11 November 2017

Shankar Balasubramanian

6

1 reference

11 November 2017

language of work or name

English

0 references

publication date

1 February 2006

1 reference

11 November 2017

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11 November 2017

45

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11 November 2017

5

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11 November 2017

1393-1399

1 reference

Inhibition of human telomerase activity by an engineered zinc finger protein that binds G-quadruplexes.

11 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Structural studies on a protein-binding zinc-finger domain of Eos reveal both similarities and differences to classical zinc fingers

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

The design of functional DNA-binding proteins based on zinc finger domains.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Force fields for protein simulations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Crystal structure of a zinc-finger–RNA complex reveals two modes of molecular recognition

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Molecular dynamics simulations of metalloproteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Telomere maintenance as a target for anticancer drug discovery

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Crystal structure of parallel quadruplexes from human telomeric DNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Custom DNA-binding proteins come of age: polydactyl zinc-finger proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Basic residues within the Kruppel zinc finger DNA binding domains are the critical nuclear localization determinants of EKLF/KLF-1.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Selection of zinc fingers that bind single-stranded telomeric DNA in the G-quadruplex conformation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Induction of duplex to G-quadruplex transition in the c-myc promoter region by a small molecule

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

DNA recognition by Cys2His2 zinc finger proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Design of novel sequence-specific DNA-binding proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Structural requirements for DNA binding of GCM proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Length-encoded multiplex binding site determination: application to zinc finger proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Surface plasmon resonance based kinetic studies of zinc finger-DNA interactions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Toward rules relating zinc finger protein sequences and DNA binding site preferences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

Experimental design for kinetic analysis of protein-protein interactions with surface plasmon resonance biosensors.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2196205

An all atom force field for simulations of proteins and nucleic acids

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16445281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure and stability of human telomeric sequence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16445281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Zinc binding in proteins and solution: a simple but accurate nonbonded representation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16445281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/BI050229X

1 reference

11 November 2017

1 reference

11 November 2017

PubMed publication ID

16445281

1 reference