A novel type of interaction between cruciform DNA and a cruciform binding protein from HeLa cells. (Q40806316)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7729431%20AND%20SRC:MED&resulttype=core&format=json

24 October 2019

title

A novel type of interaction between cruciform DNA and a cruciform binding protein from HeLa cells (English)

1 reference

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24 October 2019

author name string

Pearson CE

1

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24 October 2019

Zannis-Hadjopoulos M

2

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24 October 2019

Price GB

3

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24 October 2019

Zorbas H

4

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24 October 2019

language of work or name

English

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publication date

1 April 1995

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24 October 2019

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24 October 2019

volume

14

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24 October 2019

issue

7

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24 October 2019

page(s)

1571-1580

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POSSIBLE SEPARATION OF INTERTWINED NUCLEIC ACID CHAINS BY TRANSFER-TWIST.

24 October 2019

cites work

1 reference

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Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

24 September 2017

1 reference

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Resolution of Holliday junctions by RuvC resolvase: cleavage specificity and DNA distortion.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The structure of the four-way junction in DNA.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Evolutionary selection for perfect hairpin structures in viral DNAs

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Inverted repeated sequences in yeast nuclear DNA

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

57 Sequencing end-labeled DNA with base-specific chemical cleavages

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The intracellular distribution and function of the high mobility group chromosomal proteins

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

DNA synthesis is initiated at two positions within the origin of replication of plasmid R1162.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Effect of anti-cruciform DNA monoclonal antibodies on DNA replication

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The adenine-thymine domain of the simian virus 40 core origin directs DNA bending and coordinately regulates DNA replication

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Localized melting and structural changes in the SV40 origin of replication induced by T-antigen.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Hydroxyl radical footprints reveal novel structural features around the NF I binding site in adenovirus DNA.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Perturbation of DNA hairpins containing the EcoRI recognition site by hairpin loops of varying size and composition: physical (NMR and UV) and enzymatic (EcoRI) studies

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Initiation of rolling-circle replication in pT181 plasmid: initiator protein enhances cruciform extrusion at the origin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The NF-kappa B transcription factor induces DNA bending which is modulated by its 65-kD subunit

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Transfer-RNA interferes with the uniform cleavage pattern of DNA by hydroxyl radicals

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Specificity of binding to four-way junctions in DNA by bacteriophage T7 endonuclease I.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Reaction of single-stranded DNA with hydroxyl radical generated by iron(II)-ethylenediaminetetraacetic acid

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Anti-cruciform DNA affinity purification of active mammalian origins of replication

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The requirement for a 5' stem-loop structure in brome mosaic virus replication supports a new model for viral positive-strand RNA initiation

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Cleavage of a four-way DNA junction by a restriction enzyme spanning the point of strand exchange

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The role of metal ions in the conformation of the four-way DNA junction.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Construction and analysis of monomobile DNA junctions.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Stable stem-loop and cruciform DNA structures: isolation of mutants with rearrangements of the palindromic sequence at the simian virus 40 replication origin

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Specific recognition of cruciform DNA by nuclear protein HMG1.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The dynamic distribution and quantification of DNA cruciforms in eukaryotic nuclei

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Interaction of a four-way junction in DNA with T4 endonuclease VII.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

The three-dimensional structure of a DNA hairpin in solution two-dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT).

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

DNA cruciforms and the nuclear supporting structure

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Plasmids bearing mammalian DNA-replication origin-enriched (ors) fragments initiate semiconservative replication in a cell-free system

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Using hydroxyl radical to probe DNA structure

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Eucaryotic DNA: organization of the genome for replication

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=398244

Two-dimensional NMR and restrained molecular dynamics studies of the hairpin d(T8C4A8): detection of an extraloop cytosine

15 June 2018

1 reference

12 December 2020

Characterization of the binding specificity of two anticruciform DNA monoclonal antibodies

1 reference

12 December 2020

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction

1 reference

12 December 2020

Effects of base mismatches on the structure of the four-way DNA junction

1 reference

12 December 2020

Hydroxyl radical footprinting

1 reference

12 December 2020

The missing nucleoside experiment: a new technique to study recognition of DNA by protein

1 reference

12 December 2020

Rapid and quantitative recovery of DNA fragments from gels by displacement electrophoresis (isotachophoresis)

1 reference

12 December 2020

Chromosomal protein HMG1 removes the transcriptional block caused by the cruciform in supercoiled DNA

1 reference

12 December 2020

Model for the interaction of DNA junctions and resolving enzymes

1 reference

12 December 2020

The structure of the Holliday junction, and its resolution

1 reference

12 December 2020

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules

1 reference

12 December 2020

Hierarchy of binding sites for chromosomal proteins HMG 1 and 2 in supercoiled deoxyribonucleic acid

1 reference

12 December 2020

Structural details of an adenine tract that does not cause DNA to bend

1 reference

12 December 2020

Monoclonal antibodies to cruciform DNA structures

1 reference

12 December 2020

The unusual conformation adopted by the adenine tracts in kinetoplast DNA

1 reference

12 December 2020

Mammalian DNA enriched for replication origins is enriched for snap-back sequences

1 reference

12 December 2020

Preferential binding of histone H1 to four-way helical junction DNA

1 reference

12 December 2020

10.1002/J.1460-2075.1995.TB07143.X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7729431%20AND%20SRC:MED&resulttype=core&format=json

24 October 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7729431%20AND%20SRC:MED&resulttype=core&format=json

24 October 2019

PubMed publication ID

7729431

1 reference