Probing protein-DNA interactions at the long terminal repeat of human immunodeficiency virus type 1 by in vivo footprinting (Q40308906)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

21 September 2019

title

Probing protein-DNA interactions at the long terminal repeat of human immunodeficiency virus type 1 by in vivo footprinting (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

21 September 2019

main subject

HIV long terminal repeat

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

7 October 2022

author name string

D'Agaro P

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

21 September 2019

F. Demarchi

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

7 October 2022

P. D'Agaro

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

7 October 2022

A. Falaschi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

7 October 2022

M. Giacca

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

7 October 2022

language of work or name

English

0 references

publication date

1 April 1992

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

full work available at URL

21 September 2019

http://jvi.asm.org/cgi/content/abstract/66/4/2514

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1548776/pdf/?tool=EBI

7 October 2022

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1548776/?tool=EBI

7 October 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

https://europepmc.org/articles/PMC289049

7 October 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

https://europepmc.org/articles/PMC289049?pdf=render

7 October 2022

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1548776

7 October 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

21 September 2019

volume

66

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

21 September 2019

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

21 September 2019

page(s)

2514-2518

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:1548776%20AND%20SRC:MED&resulttype=core&format=json

57 Sequencing end-labeled DNA with base-specific chemical cleavages

21 September 2019

cites work

1 reference

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B lineage--specific interactions of an immunoglobulin enhancer with cellular factors in vivo

22 September 2017

1 reference

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Interactions of cellular proteins involved in the transcriptional regulation of the human immunodeficiency virus

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Two transcription factors, NF-kappa B and H2TF1, interact with a single regulatory sequence in the class I major histocompatibility complex promoter

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Purification of KBF1, a common factor binding to both H-2 and beta 2-microglobulin enhancers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Identification of a putative regulator of early T cell activation genes

22 September 2017

1 reference

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Alterations in binding characteristics of the human immunodeficiency virus enhancer factor

22 September 2017

1 reference

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Structure-independent DNA amplification by PCR using 7-deaza-2'-deoxyguanosine

22 September 2017

1 reference

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Identification and purification of a human immunoglobulin-enhancer-binding protein (NF-kappa B) that activates transcription from a human immunodeficiency virus type 1 promoter in vitro

22 September 2017

1 reference

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An inducible transcription factor activates expression of human immunodeficiency virus in T cells

22 September 2017

1 reference

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The location of cis-acting regulatory sequences in the human T cell lymphotropic virus type III (HTLV-III/LAV) long terminal repeat

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

NF-kappa B protein purification from bovine spleen: nucleotide stimulation and binding site specificity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

The same 50-kDa cellular protein binds to the negative regulatory elements of the interleukin 2 receptor alpha-chain gene and the human immunodeficiency virus type 1 long terminal repeat

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

The NF-kappa B binding sites in the human immunodeficiency virus type 1 long terminal repeat are not required for virus infectivity.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Human immunodeficiency virus type 1 LTR TATA and TAR region sequences required for transcriptional regulation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Regulatory pathways governing HIV-1 replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Molecular biology of HIV: new insights into the virus life-cycle

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Interaction of enhancer-binding protein EBP1 (NF-kappa B) with the human immunodeficiency virus type 1 enhancer.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Identification of cis-acting repressive sequences within the negative regulatory element of human immunodeficiency virus type 1

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

A novel T-cell protein which recognizes a palindromic sequence in the negative regulatory element of the human immunodeficiency virus long terminal repeat.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Characterization of the human immunodeficiency virus type 1 enhancer-binding proteins from the human T-cell line Jurkat

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Myb protein binds to human immunodeficiency virus 1 long terminal repeat (LTR) sequences and transactivates LTR-mediated transcription

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Modulation of HIV-enhancer activity by heterologous agents: a minireview

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Repression of HIV-1 transcription by a cellular protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

A human binding site for transcription factor USF/MLTF mimics the negative regulatory element of human immunodeficiency virus type 1.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Purification of the human immunodeficiency virus type 1 enhancer and TAR binding proteins EBP-1 and UBP-1.

22 September 2017

1 reference

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Activation of the AIDS retrovirus promoter by the cellular transcription factor, Sp1.

15 June 2018

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Structural arrangements of transcription control domains within the 5'-untranslated leader regions of the HIV-1 and HIV-2 promoters

15 June 2018

1 reference

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Cells nonproductively infected with HIV-1 exhibit an aberrant pattern of viral RNA expression: a molecular model for latency

15 June 2018

1 reference

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DNA binding factors that bind to the negative regulatory element of the human immunodeficiency virus-1: regulation by nef.

15 June 2018

1 reference

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Cyclic AMP inhibits fibronectin gene expression in a newly developed granulosa cell line by a mechanism that suppresses cAMP-responsive element-dependent transcriptional activation

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Cloning and characterization of a novel sequence-specific DNA-binding protein recognizing the negative regulatory element (NRE) region of the HIV-1 long terminal repeat

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=289049

Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR.

15 June 2018

1 reference

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Characterization of cellular proteins recognizing the HIV enhancer using a microscale DNA-affinity precipitation assay

15 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/1548776

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genomic footprinting reveals cell type-specific DNA binding of ubiquitous factors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/1548776

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Fos complex and Fos-related antigens recognize sequence elements that contain AP-1 binding sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/1548776