Unexpected binding motifs for subnucleosomal particles revealed by atomic force microscopy (Q40308799)

19 September 2017

Unexpected binding motifs for subnucleosomal particles revealed by atomic force microscopy (English)

1 reference

19 September 2017

Dessy N Nikova

1

1 reference

19 September 2017

Lisa H Pope

2

1 reference

19 September 2017

Martin L Bennink

3

1 reference

19 September 2017

Kirsten A van Leijenhorst-Groener

4

1 reference

19 September 2017

Kees van der Werf

5

1 reference

19 September 2017

Jan Greve

6

1 reference

19 September 2017

language of work or name

English

0 references

publication date

17 September 2004

1 reference

19 September 2017

1 reference

19 September 2017

87

1 reference

19 September 2017

6

1 reference

19 September 2017

4135-4145

1 reference

describes a project that uses

19 September 2017

atomic force microscopy

1 reference

Electrostatic interactions observed when imaging proteins with the atomic force microscope

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Molecular biology. Chromatin higher order folding--wrapping up transcription

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

ATP-dependent nucleosome remodeling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

The archaeal histone-fold protein HMf organizes DNA into bona fide chromatin fibers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Direct imaging of human SWI/SNF-remodeled mono- and polynucleosomes by atomic force microscopy employing carbon nanotube tips

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Translating the Histone Code

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Higher-order structure of chromatin and chromosomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Salt-dependent compaction of di- and trinucleosomes studied by small-angle neutron scattering

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Linker histone tails and N-tails of histone H3 are redundant: scanning force microscopy studies of reconstituted fibers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Chromatin fiber structure: morphology, molecular determinants, structural transitions.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Crystal structure of the nucleosome core particle at 2.8 Å resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

What determines the folding of the chromatin fiber?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Atomic force microscope measurements of nucleosome cores assembled along defined DNA sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Transcription: in tune with the histones

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

A role for histones H2A/H2B in chromatin folding and transcriptional repression

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Chromatin Structure: A Repeating Unit of Histones and DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Nucleosome positioning is determined by the (H3-H4)2 tetramer

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Solenoidal model for superstructure in chromatin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

A new procedure for purifying histone pairs H2A+H2B and H3+H4 from chromatin using hydroxylapatite

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Structure, dynamics, and function of chromatin in vitro

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

DNA binding within the nucleosome core

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Energetics and affinity of the histone octamer for defined DNA sequences

11 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

Nucleosome dynamics. Protein and DNA contributions in the chiral transition of the tetrasome, the histone (H3-H4)2 tetramer-DNA particle.

11 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304922

DNA height in scanning force microscopy

11 August 2018

1 reference

12 December 2020

Domains of the positive transcription factor specific for the Xenopus 5S RNA gene

1 reference

12 December 2020

Formaldehyde and glutaraldehyde in the fixation of chromatin for electron microscopy

1 reference

12 December 2020

Homogeneous reconstituted oligonucleosomes, evidence for salt-dependent folding in the absence of histone H1

1 reference

12 December 2020

Role of the histone "tails" in the folding of oligonucleosomes depleted of histone H1

1 reference

12 December 2020

Formation and stability of higher order chromatin structures. Contributions of the histone octamer

1 reference

12 December 2020

Quantitative analysis of macromolecular conformational changes using agarose gel electrophoresis: application to chromatin folding

1 reference

12 December 2020

Visualization of Nucleosomal Substructure in Native Chromatin by Atomic Force Microscopy

1 reference

12 December 2020

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

1 reference

12 December 2020

A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites

1 reference

12 December 2020

Reversible oligonucleosome self-association: dependence on divalent cations and core histone tail domains

1 reference

12 December 2020

Atomic force microscopy sees nucleosome positioning and histone H1-induced compaction in reconstituted chromatin

1 reference

12 December 2020

Evidence for nonrandom behavior in 208-12 subsaturated nucleosomal array populations analyzed by AFM

1 reference

12 December 2020

Effect of Poly(ADP-ribosyl)ation and Mg2+Ions on Chromatin Structure Revealed by Scanning Force Microscopy†

1 reference

12 December 2020

Mapping nucleosome locations on the 208-12 by AFM provides clear evidence for cooperativity in array occupation

1 reference

12 December 2020

10.1529/BIOPHYSJ.104.048983

Identifiers

DOI

1 reference

release_7b4baqiajnamfn4nqnwjurghqa

19 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7b4baqiajnamfn4nqnwjurghqa

24 November 2022

mapped directly with Wikidata item

1 reference

19 September 2017

PubMed publication ID

15377519

1 reference