The challenge of increasing Pfam coverage of the human proteome (Q39957451)

15 September 2017

The challenge of increasing Pfam coverage of the human proteome. (English)

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15 September 2017

6

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15 September 2017

7

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15 September 2017

1

Jaina Mistry

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15 September 2017

Andrea Giansanti

5

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Penny C. Coggill

series ordinal

2

object named as

Penny Coggill

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15 September 2017

3

Ruth Y Eberhardt

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15 September 2017

8

Marco Punta

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15 September 2017

Antonio Deiana

4

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PMC publication ID

3630804

15 September 2017

language of work or name

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19 April 2013

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15 September 2017

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15 September 2017

2013

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15 September 2017

bat023

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Creative Commons Attribution-NonCommercial 3.0 Unported

15 September 2017

start time

3 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

D²P²: database of disordered protein predictions

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An integrated encyclopedia of DNA elements in the human genome

22 September 2017

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MobiDB: a comprehensive database of intrinsic protein disorder annotations.

22 September 2017

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Structural disorder in eukaryotes

22 September 2017

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Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis

22 September 2017

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The Pfam protein families database

22 September 2017

1 reference

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The UniProt-GO Annotation database in 2011.

22 September 2017

1 reference

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Saccharomyces Genome Database: the genomics resource of budding yeast

22 September 2017

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InterPro in 2011: new developments in the family and domain prediction database

22 September 2017

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IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature

22 September 2017

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Intrinsic disorder in cell signaling and gene transcription

22 September 2017

1 reference

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Intrinsically disordered proteins: regulation and disease

22 September 2017

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Bringing order to protein disorder through comparative genomics and genetic interactions

22 September 2017

1 reference

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EcoCyc: a comprehensive database of Escherichia coli biology

22 September 2017

1 reference

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Understanding protein non-folding.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Unfoldomics of human genetic diseases: illustrative examples of ordered and intrinsically disordered members of the human diseasome

22 September 2017

1 reference

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The Pfam protein families database

22 September 2017

1 reference

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Predicting intrinsic disorder in proteins: an overview

22 September 2017

1 reference

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The unfoldomics decade: an update on intrinsically disordered proteins.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Data growth and its impact on the SCOP database: new developments

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

DisProt: the Database of Disordered Proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

The SH2 domain: versatile signaling module and pharmaceutical target

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

ADDA: a domain database with global coverage of the protein universe

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

A combined transmembrane topology and signal peptide prediction method

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

The Structure and Function of Proline Recognition Domains

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

An efficient algorithm for large-scale detection of protein families

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

InterProScan--an integration platform for the signature-recognition methods in InterPro

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

SH3 domains: complexity in moderation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Initial sequencing and analysis of the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Analysis of compositionally biased regions in sequence databases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Non-globular domains in protein sequences: automated segmentation using complexity measures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

The interaction of eIF4E with 4E-BP1 is an induced fit to a completely disordered protein

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Classifying a protein in the CATH database of domain structures

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

Benchmarking homology detection procedures with low complexity filters

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3630804

2 December 2018

Identifiers

DOI

10.1093/DATABASE/BAT023

1 reference

15 September 2017

1 reference

PMC publication ID

3630804

15 September 2017

PubMed publication ID

23603847

1 reference

PMC publication ID

3630804