Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition (Q38372675)

2 September 2017

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition (English)

1 reference

2 September 2017

0 references

41

1 reference

2 September 2017

2

Julie Poulain

0 references

Stéphane Pesant

48

Stéphane Pesant

1 reference

2 September 2017

Stefanie Kandels-Lewis

37

Stefanie Kandels-Lewis

1 reference

2 September 2017

49

Eric Karsenti

1 reference

2 September 2017

26

Marta Royo-Llonch

1 reference

2 September 2017

Caroline Belser

9

0 references

Clara Amid

Clara Amid

32

0 references

Petra Ten Hoopen

Petra Ten Hoopen

33

0 references

Stéfan Engelen

Stefan Engelen

3

0 references

Frédérick Gavory

Frédérick Gavory

14

0 references

Corinne Da Silva

Corinne Da Silva

12

0 references

Guy R. Cochrane

Guy Cochrane

31

0 references

Chris Bowler

Chris Bowler

30

0 references

Isabel Ferrera

Isabel Ferrera

6

0 references

Ramiro Logares

Ramiro Logares

28

0 references

Nigel Grimsley

Nigel Grimsley

35

0 references

Jean-Marc Aury

Jean-Marc Aury

Francisco M Cornejo-Castillo

8

0 references

Francisco M Cornejo-Castillo

27

0 references

Corinne Cruaud

11

Corinne Cruaud

1 reference

2 September 2017

50

Patrick Wincker

1 reference

2 September 2017

19

Olivier Jaillon

1 reference

2 September 2017

25

Silvia G Acinas

1 reference

2 September 2017

40

Michael E Sieracki

1 reference

2 September 2017

5

Sarah Romac

1 reference

2 September 2017

43

Jennifer R Brum

1 reference

2 September 2017

13

Carole Dossat

1 reference

2 September 2017

1

Adriana Alberti

1 reference

2 September 2017

20

Arnaud Lemainque

1 reference

2 September 2017

34

Colomban De Vargas

1 reference

2 September 2017

39

Nicole Poulton

1 reference

2 September 2017

45

Bonnie T Poulos

1 reference

2 September 2017

15

Shahinaz Gas

1 reference

2 September 2017

22

Gaëlle Samson

1 reference

2 September 2017

44

Melissa B Duhaime

1 reference

2 September 2017

Karine Labadie

4

1 reference

2 September 2017

Guillaume Albini

7

1 reference

2 September 2017

Alexis Bertrand

10

1 reference

2 September 2017

Julie Guy

16

1 reference

2 September 2017

Maud Haquelle

17

1 reference

2 September 2017

E'krame Jacoby

18

1 reference

2 September 2017

Eric Pelletier

21

1 reference

2 September 2017

Mark Wessner

23

1 reference

2 September 2017

Genoscope Technical Team

24

1 reference

2 September 2017

Beatriz Fernández-Gómez

29

1 reference

2 September 2017

Elodie Desgranges

36

1 reference

2 September 2017

Hiroyuki Ogata

38

1 reference

2 September 2017

Matthew B Sullivan

42

1 reference

2 September 2017

Bonnie L Hurwitz

46

1 reference

2 September 2017

Tara Oceans Consortium Coordinators

47

1 reference

2 September 2017

1 August 2017

1 reference

2 September 2017

1 reference

2 September 2017

4

1 reference

2 September 2017

170093

1 reference

Creative Commons Attribution 4.0 International

2 September 2017

start time

1 August 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Insights into global diatom distribution and diversity in the world's ocean

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Plankton networks driving carbon export in the oligotrophic ocean

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Open science resources for the discovery and analysis of Tara Oceans data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Ocean plankton. Determinants of community structure in the global plankton interactome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Ocean plankton. Patterns and ecological drivers of ocean viral communities

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Ocean plankton. Structure and function of the global ocean microbiome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

The Eukaryotic Tree of Life from a Global Phylogenomic Perspective

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Sequencing platform and library preparation choices impact viral metagenomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Metagenomics: microbial diversity through a scratched lens

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Unlocking the potential of metagenomics through replicated experimental design

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Metagenomics - a guide from sampling to data analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

A holistic approach to marine eco-systems biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Metatranscriptomic approach to analyze the functional human gut microbiota

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Microbial metagenomics: beyond the genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

A human gut microbial gene catalogue established by metagenomic sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Database indexing for production MegaBLAST searches

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Functional metagenomic profiling of nine biomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Microbial community gene expression in ocean surface waters

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

SOAP: short oligonucleotide alignment program

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

MEGAN analysis of metagenomic data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Archaea predominate among ammonia-oxidizing prokaryotes in soils

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Sequencing genomes from single cells by polymerase cloning

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Environmental genome shotgun sequencing of the Sargasso Sea

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

A simple and efficient method for concentration of ocean viruses by chemical flocculation

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

Extraction of high molecular weight DNA from molluscs

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538240

31 August 2018

Identifiers

DOI

10.1038/SDATA.2017.93

1 reference

Dimensions Publication ID

2 September 2017

0 references

1 reference

2 September 2017

PubMed publication ID

28763055

1 reference