Diversifying microRNA sequence and function (Q38117040)

29 August 2017

title

Diversifying microRNA sequence and function (English)

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29 August 2017

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Stefan L Ameres

1

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Phillip D. Zamore

object named as

Phillip D Zamore

series ordinal

2

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publication date

26 June 2013

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Nature Reviews Molecular Cell Biology

29 August 2017

published in

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29 August 2017

volume

14

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29 August 2017

issue

8

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29 August 2017

page(s)

475-488

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The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

29 August 2017

cites work

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Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans

31 March 2020

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miRBase: microRNA sequences, targets and gene nomenclature

31 March 2020

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Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

31 March 2020

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Most mammalian mRNAs are conserved targets of microRNAs

31 March 2020

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MicroRNAs: genomics, biogenesis, mechanism, and function

31 March 2020

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MicroRNAS and their regulatory roles in plants

31 March 2020

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Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

31 March 2020

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miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii

31 March 2020

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Biogenesis of small RNAs in animals

31 March 2020

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Vive la différence: biogenesis and evolution of microRNAs in plants and animals

31 March 2020

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Posttranscriptional regulation of microRNA biogenesis in animals

31 March 2020

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Origins and Mechanisms of miRNAs and siRNAs

31 March 2020

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Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants

31 March 2020

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MicroRNA genes are transcribed by RNA polymerase II

31 March 2020

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Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs

31 March 2020

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Expression of Arabidopsis MIRNA genes

31 March 2020

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Chromatin structure analyses identify miRNA promoters

31 March 2020

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Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data

31 March 2020

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Identification of mammalian microRNA host genes and transcription units

31 March 2020

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Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes

31 March 2020

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Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

31 March 2020

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Processing of intronic microRNAs

31 March 2020

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Coupled RNA processing and transcription of intergenic primary microRNAs

31 March 2020

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Functional association of the Microprocessor complex with the spliceosome

31 March 2020

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The nuclear RNase III Drosha initiates microRNA processing

31 March 2020

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Processing of primary microRNAs by the Microprocessor complex

31 March 2020

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The Microprocessor complex mediates the genesis of microRNAs

31 March 2020

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The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis

31 March 2020

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The Drosha-DGCR8 complex in primary microRNA processing

31 March 2020

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Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex

31 March 2020

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Human RNase III is a 160-kDa protein involved in preribosomal RNA processing

31 March 2020

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Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines.

31 March 2020

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Ribonuclease activity and RNA binding of recombinant human Dicer

31 March 2020

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MicroRNA maturation: stepwise processing and subcellular localization

31 March 2020

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Sequence requirements for micro RNA processing and function in human cells

31 March 2020

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A high-resolution structure of the pre-microRNA nuclear export machinery

31 March 2020

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Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs

31 March 2020

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Nuclear export of microRNA precursors

31 March 2020

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Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs

31 March 2020

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Structural requirements for pre-microRNA binding and nuclear export by Exportin 5.

31 March 2020

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Role for a bidentate ribonuclease in the initiation step of RNA interference

31 March 2020

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A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA

31 March 2020

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Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing

31 March 2020

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Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans

31 March 2020

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Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways

31 March 2020

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Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP

31 March 2020

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Single processing center models for human Dicer and bacterial RNase III

31 March 2020

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miR-451 regulates zebrafish erythroid maturation in vivo via its target gata2

31 March 2020

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A dicer-independent miRNA biogenesis pathway that requires Ago catalysis

31 March 2020

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Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis

31 March 2020

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Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells

31 March 2020

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Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein

31 March 2020

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Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila

31 March 2020

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Dicer partner proteins tune the length of mature miRNAs in flies and mammals

31 March 2020

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Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease

31 March 2020

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TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing

31 March 2020

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TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing

31 March 2020

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The role of PACT in the RNA silencing pathway

31 March 2020

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TRBP alters human precursor microRNA processing in vitro

31 March 2020

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Small RNA sorting: matchmaking for Argonautes.

31 March 2020

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31 March 2020

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MicroRNAs: target recognition and regulatory functions

31 March 2020

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

31 March 2020

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A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

31 March 2020

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Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs

31 March 2020

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The code within the code: microRNAs target coding regions

31 March 2020

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

31 March 2020

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

31 March 2020

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

31 March 2020

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Silencing of microRNAs in vivo with 'antagomirs'

31 March 2020

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Target RNA-directed trimming and tailing of small silencing RNAs

31 March 2020

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Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells

31 March 2020

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Long-term, efficient inhibition of microRNA function in mice using rAAV vectors

31 March 2020

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Structure and conserved RNA binding of the PAZ domain

31 March 2020

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Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain

31 March 2020

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NMR assignment of the Drosophila Argonaute2 PAZ domain

31 March 2020

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Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain

31 March 2020

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Structure of the guide-strand-containing argonaute silencing complex

31 March 2020

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Essential metabolic, anti-inflammatory, and anti-tumorigenic functions of miR-122 in liver.

31 March 2020

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MicroRNA-122 plays a critical role in liver homeostasis and hepatocarcinogenesis

31 March 2020

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Regulation of microRNA biogenesis and turnover by animals and their viruses

31 March 2020

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RNA viruses and the host microRNA machinery

31 March 2020

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A novel repeat-associated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary

31 March 2020

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The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC.

31 March 2020

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Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins

31 March 2020

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CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana

31 March 2020

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Methylation as a crucial step in plant microRNA biogenesis

31 March 2020

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Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

31 March 2020

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HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide

31 March 2020

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WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice

31 March 2020

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Structural insights into mechanisms of the small RNA methyltransferase HEN1

31 March 2020

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Kinetic and functional analysis of the small RNA methyltransferase HEN1: the catalytic domain is essential for preferential modification of duplex RNA

31 March 2020

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Active turnover modulates mature microRNA activity in Caenorhabditis elegans

31 March 2020

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Sustained small interfering RNA-mediated human immunodeficiency virus type 1 inhibition in primary macrophages

31 March 2020

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Target-mediated protection of endogenous microRNAs in C. elegans

31 March 2020

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Differential regulation of microRNA stability

31 March 2020

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Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

31 March 2020

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Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

31 March 2020

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miRNA profiling of naïve, effector and memory CD8 T cells.

31 March 2020

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Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

31 March 2020

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Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA* strands in flies.

31 March 2020

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

31 March 2020

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Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs

31 March 2020

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Hierarchical rules for Argonaute loading in Drosophila

31 March 2020

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Distinct mechanisms for microRNA strand selection by Drosophila Argonautes

31 March 2020

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Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway

31 March 2020

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Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans

31 March 2020

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Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

31 March 2020

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A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

31 March 2020

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Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications.

31 March 2020

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RNA editing of human microRNAs

31 March 2020

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A mammalian microRNA expression atlas based on small RNA library sequencing

31 March 2020

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Redirection of silencing targets by adenosine-to-inosine editing of miRNAs

31 March 2020

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ADAR editing in double-stranded UTRs and other noncoding RNA sequences

31 March 2020

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The role of RNA editing by ADARs in RNAi

31 March 2020

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In C. elegans, high levels of dsRNA allow RNAi in the absence of RDE-4

31 March 2020

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Competition between ADAR and RNAi pathways for an extensive class of RNA targets

31 March 2020

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The exoribonuclease Nibbler controls 3' end processing of microRNAs in Drosophila.

31 March 2020

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The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1.

31 March 2020

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Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD.

31 March 2020

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A genetic link between co-suppression and RNA interference in C. elegans

31 March 2020

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Genetic requirements for inheritance of RNAi in C. elegans

31 March 2020

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Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi

31 March 2020

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Efficient RNA polyuridylation by noncanonical poly(A) polymerases

31 March 2020

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The poly(A) tail of mRNAs: bodyguard in eukaryotes, scavenger in bacteria

31 March 2020

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RNA decay via 3' uridylation

31 March 2020

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TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation

31 March 2020

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Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells

31 March 2020

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Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA

31 March 2020

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Bringing single-molecule spectroscopy to macromolecular protein complexes

31 March 2020

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A role for the Perlman syndrome exonuclease Dis3l2 in the Lin28-let-7 pathway

31 March 2020

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Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs

31 March 2020

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Zcchc11-dependent uridylation of microRNA directs cytokine expression

31 March 2020

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Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

31 March 2020

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A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

31 March 2020

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Adenylation of plant miRNAs.

31 March 2020

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The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation

31 March 2020

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Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis.

31 March 2020

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Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.

31 March 2020

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Untemplated oligoadenylation promotes degradation of RISC-cleaved transcripts.

31 March 2020

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Uridine addition after microRNA-directed cleavage

31 March 2020

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A biochemical framework for RNA silencing in plants

31 March 2020

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MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region

31 March 2020

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Kinetic analysis of the RNAi enzyme complex

31 March 2020

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Molecular basis for target RNA recognition and cleavage by human RISC.

31 March 2020

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Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties

31 March 2020

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Crystal structure of Argonaute and its implications for RISC slicer activity

31 March 2020

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Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex

31 March 2020

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Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex

31 March 2020

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Enhancement of the Seed-Target Recognition Step in RNA Silencing by a PIWI/MID Domain Protein

31 March 2020

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The Crystal Structure of Human Argonaute2

31 March 2020

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The Structure of Human Argonaute-2 in Complex with miR-20a

31 March 2020

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Structure of yeast Argonaute with guide RNA

31 March 2020

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Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes

31 March 2020

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An alternative mode of microRNA target recognition

31 March 2020

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Potent effect of target structure on microRNA function.

31 March 2020

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Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

31 March 2020

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The role of site accessibility in microRNA target recognition

31 March 2020

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The impact of target site accessibility on the design of effective siRNAs

31 March 2020

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Target site effects in the RNA interference and microRNA pathways

31 March 2020

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RNA-binding protein Dnd1 inhibits microRNA access to target mRNA

31 March 2020

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Relief of microRNA-mediated translational repression in human cells subjected to stress

31 March 2020

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Derepression of microRNA-mediated protein translation inhibition by apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3G (APOBEC3G) and its family members

31 March 2020

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Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization

31 March 2020

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CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation

31 March 2020

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MicroRNA-340-mediated degradation of microphthalmia-associated transcription factor mRNA is inhibited by the coding region determinant-binding protein

31 March 2020

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Repression of VEGFA by CA-rich element-binding microRNAs is modulated by hnRNP L

31 March 2020

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The let-7-Imp axis regulates ageing of the Drosophila testis stem-cell niche

31 March 2020

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Expanding the microRNA targeting code: functional sites with centered pairing

31 March 2020

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Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

31 March 2020

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Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing.

31 March 2020

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AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

31 March 2020

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

31 March 2020

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Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

31 March 2020

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Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

31 March 2020

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Biochemical evidence for translational repression by Arabidopsis microRNAs.

31 March 2020

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Widespread translational inhibition by plant miRNAs and siRNAs

31 March 2020

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MicroRNA-directed cleavage of HOXB8 mRNA

31 March 2020

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RNAi-Mediated Allelic trans-Interaction at the Imprinted Rtl1/Peg11 Locus

31 March 2020

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Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases

31 March 2020

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Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation

31 March 2020

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Involvement of microRNA in AU-rich element-mediated mRNA instability

31 March 2020

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Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

31 March 2020

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Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

31 March 2020

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Genome-wide analysis of mRNAs regulated by Drosha and Argonaute proteins in Drosophila melanogaster

31 March 2020

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MicroRNAs direct rapid deadenylation of mRNA

31 March 2020

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The impact of microRNAs on protein output

31 March 2020

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Widespread changes in protein synthesis induced by microRNAs

31 March 2020

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Mammalian microRNAs predominantly act to decrease target mRNA levels

31 March 2020

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

31 March 2020

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Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA

31 March 2020

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Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish

31 March 2020

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A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing

31 March 2020

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mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes

31 March 2020

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GW182 proteins directly recruit cytoplasmic deadenylase complexes to miRNA targets

31 March 2020

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Drosophila miR2 induces pseudo-polysomes and inhibits translation initiation.

31 March 2020

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Drosophila argonaute1 and argonaute2 employ distinct mechanisms for translational repression.

31 March 2020

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MicroRNA Inhibition of Translation Initiation in Vitro by Targeting the Cap-Binding Complex eIF4F

31 March 2020

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Drosophila miR2 primarily targets the m7GpppN cap structure for translational repression

31 March 2020

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Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation

31 March 2020

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miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay

31 March 2020

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Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay

31 March 2020

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MicroRNA-373 induces expression of genes with complementary promoter sequences

31 March 2020

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Small dsRNAs induce transcriptional activation in human cells

31 March 2020

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Antisense transcripts are targets for activating small RNAs

31 March 2020

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DDX6 (Rck/p54) is required for efficient hepatitis C virus replication but not for internal ribosome entry site-directed translation

31 March 2020

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Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA

31 March 2020

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Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection

31 March 2020

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Switching from repression to activation: microRNAs can up-regulate translation

31 March 2020

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AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2.

31 March 2020

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MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation

31 March 2020

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A microRNA imparts robustness against environmental fluctuation during development

31 March 2020

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Most Caenorhabditis elegans microRNAs are individually not essential for development or viability

31 March 2020

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Redefining microRNA targets

31 March 2020

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Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing

31 March 2020

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Sequence-specific inhibition of small RNA function

31 March 2020

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MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

31 March 2020

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Transgenic microRNA inhibition with spatiotemporal specificity in intact organisms.

31 March 2020

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MicroRNA sponges: progress and possibilities

31 March 2020

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Target mimicry provides a new mechanism for regulation of microRNA activity

31 March 2020

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A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana

31 March 2020

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A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?

31 March 2020

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Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs

31 March 2020

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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

31 March 2020

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In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma

31 March 2020

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A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA

31 March 2020

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An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma

31 March 2020

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The microRNAs of Caenorhabditis elegans

31 March 2020

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miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1.

31 March 2020

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High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries

31 March 2020

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MicroRNA-133 controls cardiac hypertrophy

31 March 2020

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Stable knockdown of microRNA in vivo by lentiviral vectors

31 March 2020

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Vectors expressing efficient RNA decoys achieve the long-term suppression of specific microRNA activity in mammalian cells

31 March 2020

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Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA

31 March 2020

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Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo

31 March 2020

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Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target

31 March 2020

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Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

31 March 2020

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Natural RNA circles function as efficient microRNA sponges

31 March 2020

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Circular RNAs are a large class of animal RNAs with regulatory potency

31 March 2020

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A hexanucleotide element directs microRNA nuclear import.

31 March 2020

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Analysis of microRNA turnover in mammalian cells following Dicer1 ablation.

31 March 2020

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Control of stress-dependent cardiac growth and gene expression by a microRNA

31 March 2020

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MicroRNA Destabilization Enables Dynamic Regulation of the miR-16 Family in Response to Cell-Cycle Changes

31 March 2020

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Uracils at nucleotide position 9-11 are required for the rapid turnover of miR-29 family.

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRM3611

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Dimensions Publication ID

29 August 2017

1051215664

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