Annotating non-coding transcription using functional genomics strategies. (Q37387944)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

review article

1 reference

title

Annotating non-coding transcription using functional genomics strategies (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Piero Carninci

series ordinal

3

1 reference

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10 February 2020

2

Rehab F Abdelhamid

1 reference

10 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

publication date

1 November 2009

1 reference

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Briefings in functional genomics & proteomics

10 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

volume

8

1 reference

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10 February 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

page(s)

437-443

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

Whole genome transcriptome analysis.

10 February 2020

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1 reference

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6 September 2017

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RNA exosome depletion reveals transcription upstream of active human promoters

6 September 2017

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6 September 2017

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Widespread changes in protein synthesis induced by microRNAs

6 September 2017

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MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries

6 September 2017

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Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation

6 September 2017

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

6 September 2017

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

6 September 2017

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Efficient targeted transcript discovery via array-based normalization of RACE libraries

6 September 2017

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6 September 2017

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

6 September 2017

1 reference

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Discovering microRNAs from deep sequencing data using miRDeep

6 September 2017

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Targeted deletion reveals essential and overlapping functions of the miR-17 through 92 family of miRNA clusters

6 September 2017

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Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

6 September 2017

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Regulation of progenitor cell proliferation and granulocyte function by microRNA-223

6 September 2017

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Paired-end diTagging for transcriptome and genome analysis

6 September 2017

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Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

6 September 2017

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Genome-scale microRNA and small interfering RNA screens identify small RNA modulators of TRAIL-induced apoptosis pathway

6 September 2017

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6 September 2017

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A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors

6 September 2017

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MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

6 September 2017

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The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.

6 September 2017

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

6 September 2017

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Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

6 September 2017

1 reference

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

6 September 2017

1 reference

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Searching genomes for ribozymes and riboswitches

6 September 2017

1 reference

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Regulation of the germinal center response by microRNA-155

6 September 2017

1 reference

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Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

6 September 2017

1 reference

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Inference of miRNA targets using evolutionary conservation and pathway analysis

6 September 2017

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Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs

6 September 2017

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RNAdb 2.0--an expanded database of mammalian non-coding RNAs

6 September 2017

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A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene

6 September 2017

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Characterization of the piRNA Complex from Rat Testes

6 September 2017

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Dissecting self-renewal in stem cells with RNA interference

6 September 2017

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The abundance of short proteins in the mammalian proteome

6 September 2017

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Clusters of internally primed transcripts reveal novel long noncoding RNAs

6 September 2017

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Pseudo-messenger RNA: phantoms of the transcriptome

6 September 2017

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6 September 2017

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Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

6 September 2017

1 reference

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Antisense transcription in the mammalian transcriptome

6 September 2017

1 reference

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The transcriptional landscape of the mammalian genome

6 September 2017

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6 September 2017

1 reference

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Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis

6 September 2017

1 reference

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Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

6 September 2017

1 reference

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Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha

6 September 2017

1 reference

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Sequence-specific inhibition of small RNA function

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Prediction of mammalian microRNA targets

6 September 2017

1 reference

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Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

6 September 2017

1 reference

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Challenging the dogma: the hidden layer of non‐protein‐coding RNAs in complex organisms

6 September 2017

1 reference

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Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

6 September 2017

1 reference

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Overexpression of an ectopic H19 gene enhances the tumorigenic properties of breast cancer cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Identification of a new imprinted gene, Rian, on mouse chromosome 12 by fluorescent differential display screening

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Role for a bidentate ribonuclease in the initiation step of RNA interference

6 September 2017

1 reference

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A species of small antisense RNA in posttranscriptional gene silencing in plants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Messenger RNA translation state: the second dimension of high-throughput expression screening

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Tsix, a gene antisense to Xist at the X-inactivation centre

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Signal recognition particle contains a 7S RNA essential for protein translocation across the endoplasmic reticulum

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Identification of the chromatin regions coated by non-coding Xist RNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Quantification of the yeast transcriptome by single-molecule sequencing

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Experimental annotation of the human genome using microarray technology

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

The human NTT gene: identification of a novel 17-kb noncoding nuclear RNA expressed in activated CD4+ T cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Nucleotide sequence of nucleolar U3B RNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Tiny RNAs associated with transcription start sites in animals.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Inducible- and constitutive-type transcript variants of kakusei , a novel non-coding immediate early gene, in the honeybee brain.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Microarray-based genomic selection for high-throughput resequencing

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Non-coding RNA directed DNA demethylation of Sphk1 CpG island.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

Prediction of locally stable RNA secondary structures for genome-wide surveys

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2762128

The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19833699

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A new class of small nuclear RNA molecules synthesized by a type I RNA polymerase in hela cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19833699

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BFGP/ELP041

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19833699%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

19833699

1 reference