Microbial proteomics: a mass spectrometry primer for biologists. (Q36909600)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17697372%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

review article

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title

Microbial proteomics: a mass spectrometry primer for biologists (English)

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3 January 2020

3

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3 January 2020

author name string

Robert Lj Graham

series ordinal

1

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3 January 2020

Ciaren Graham

series ordinal

2

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3 January 2020

publication date

15 August 2007

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3 January 2020

published in

Microbial Cell Factories

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3 January 2020

volume

6

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3 January 2020

page(s)

26

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

3 January 2020

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Analysis of microbial gene transcripts in environmental samples

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Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

29 September 2017

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Novel approach for peptide quantitation and sequencing based on 15N and 13C metabolic labeling

29 September 2017

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A Heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results

29 September 2017

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Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus

29 September 2017

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Current two-dimensional electrophoresis technology for proteomics

29 September 2017

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Towards a comprehensive understanding of Bacillus subtilis cell physiology by physiological proteomics

29 September 2017

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PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

29 September 2017

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Proteomics by FTICR mass spectrometry: top down and bottom up

29 September 2017

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Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

29 September 2017

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The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms

29 September 2017

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Construction of a hybrid quadrupole/Fourier transform ion cyclotron resonance mass spectrometer for versatile MS/MS above 10 kDa.

29 September 2017

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Improved prediction of signal peptides: SignalP 3.0

29 September 2017

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Improved detection of hydrophilic phosphopeptides using graphite powder microcolumns and mass spectrometry: evidence for in vivo doubly phosphorylated dynamin I and dynamin III.

29 September 2017

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Proteomics and mass spectrometry in nutrition research

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Proteomic analysis of post-translational modifications

29 September 2017

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29 September 2017

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29 September 2017

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Shotgun proteomics and biomarker discovery.

29 September 2017

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Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments

29 September 2017

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Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and proteomics: a new era in anaerobic microbiology

29 September 2017

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Exploration of inorganic C and N assimilation by soil microbes with time-of-flight secondary ion mass spectrometry.

29 September 2017

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Shotgun proteomics: tools for the analysis of complex biological systems

29 September 2017

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Analysis of quantitative proteomic data generated via multidimensional protein identification technology

29 September 2017

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Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome

29 September 2017

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29 September 2017

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Proteomics in experimental gerontology

29 September 2017

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Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology

29 September 2017

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Phospho-proteomics: evaluation of the use of enzymatic de-phosphorylation and differential mass spectrometric peptide mass mapping for site specific phosphorylation assignment in proteins separated by gel electrophoresis

29 September 2017

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Use of antibodies for detection of phosphorylated proteins separated by two-dimensional gel electrophoresis

29 September 2017

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Analysis of proteins and proteomes by mass spectrometry

29 September 2017

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29 September 2017

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The role of mass spectrometry in vaccine development

29 September 2017

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

29 September 2017

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Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis

29 September 2017

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Some tenets pertaining to electrospray ionization mass spectrometry

29 September 2017

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Analysis of the microbial proteome

29 September 2017

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Single-cell MALDI: a new tool for direct peptide profiling

29 September 2017

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Ionization in matrix-assisted laser desorption/ionization: singly charged molecular ions are the lucky survivors

29 September 2017

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Probability-based protein identification by searching sequence databases using mass spectrometry data

29 September 2017

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A sampling of the yeast proteome

29 September 2017

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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

29 September 2017

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Ideal velocity focusing in a reflectron time-of-flight mass spectrometer

29 September 2017

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How stable is stable? Function versus community composition.

29 September 2017

1 reference

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Direct analysis of protein complexes using mass spectrometry

29 September 2017

1 reference

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Difference gel electrophoresis. A single gel method for detecting changes in protein extracts

29 September 2017

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Future potential of targeted component analysis by multidimensional liquid chromatography-mass spectrometry

29 September 2017

1 reference

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Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons

29 September 2017

1 reference

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Electrospray ionization for mass spectrometry of large biomolecules

29 September 2017

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Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers

29 September 2017

1 reference

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High-resolution tandem mass spectrometry of large biomolecules

29 September 2017

1 reference

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High resolution two-dimensional electrophoresis of proteins

29 September 2017

1 reference

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Identifying proteins and post-translational modifications by mass spectrometry

29 September 2017

1 reference

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Amidosulfobetaines, a family of detergents with improved solubilization properties: application for isoelectric focusing under denaturing conditions

27 June 2018

1 reference

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A combined shotgun and multidimensional proteomic analysis of the insoluble subproteome of the obligate thermophile, Geobacillus thermoleovorans T80.

27 June 2018

1 reference

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More than just 'doing the math'.

4 September 2018

1 reference

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Salt stress adaptation of Bacillus subtilis: a physiological proteomics approach.

4 September 2018

1 reference

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Identification and characterization of the Sulfolobus solfataricus P2 proteome

4 September 2018

1 reference

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A top-down proteomics approach for differentiating thermal resistant strains of Enterobacter sakazakii

4 September 2018

1 reference

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Community proteomics of a natural microbial biofilm

4 September 2018

1 reference

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A proteomic fingerprint of dissolved organic carbon and of soil particles

4 September 2018

1 reference

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Only a small subset of the horizontally transferred chromosomal genes in Escherichia coli are translated into proteins.

4 September 2018

1 reference

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Towards a phosphoproteome map of Corynebacterium glutamicum.

4 September 2018

1 reference

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Enhanced secretion and low temperature stabilization of a hyperthermostable and Ca2+-independent alpha-amylase of Geobacillus thermoleovorans by surfactants

4 September 2018

1 reference

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Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode

4 September 2018

1 reference

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Multidimensional analysis of the insoluble sub-proteome of Oceanobacillus iheyensis HTE831, an alkaliphilic and halotolerant deep-sea bacterium isolated from the Iheya ridge

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1971468

Multidimensional proteomic analysis of the soluble subproteome of the emerging nosocomial pathogen Ochrobactrum anthropi

20 October 2018

2 references

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20 October 2018

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Top-down proteomic analysis of the soluble sub-proteome of the obligate thermophile, Geobacillus thermoleovorans T80: insights into its cellular processes

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1971468

Relative quantification in proteomics: new approaches for biochemistry

20 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1971468

Multiple Reaction Monitoring to Identify Sites of Protein Phosphorylation with High Sensitivity

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1971468

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1971468

Novel fragmentation process of peptides by collision-induced decomposition in a tandem mass spectrometer: differentiation of leucine and isoleucine

4 December 2018

1 reference

12 December 2020

Origin of product ions in the MS/MS spectra of peptides in a quadrupole ion trap

1 reference

12 December 2020

Proteomic dissection of potential signal recognition particle dependence in protein secretion by Bacillus subtilis

1 reference

12 December 2020

Purification and characterization of the highly thermostable proteases from Bacillus stearothermophilus TLS33

1 reference

12 December 2020

Generating protein sequence tags by combining cone and conventional collision induced dissociation in a quadrupole time-of-flight mass spectrometer

1 reference

12 December 2020

Proteomics: a new diagnostic frontier

1 reference

12 December 2020

Identifiers

DOI

10.1186/1475-2859-6-26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17697372%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

3 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17697372%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

PubMed publication ID

17697372

1 reference