Global analysis of Escherichia coli RNA degradosome function using DNA microarrays (Q36852086)

16 August 2017

Global analysis of Escherichia coli RNA degradosome function using DNA microarrays (English)

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16 August 2017

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Jonathan A Bernstein

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16 August 2017

Pei-Hsun Lin

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2

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16 August 2017

Stanley N Cohen

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3

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16 August 2017

Sue Lin-Chao

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4

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16 August 2017

language of work or name

English

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publication date

23 February 2004

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Proceedings of the National Academy of Sciences of the United States of America

16 August 2017

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16 August 2017

101

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16 August 2017

9

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16 August 2017

2758-2763

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describes a project that uses

16 August 2017

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Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Senescence-specific gene expression fingerprints reveal cell-type-dependent physical clustering of up-regulated chromosomal loci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

The Stanford Microarray Database: data access and quality assessment tools

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

The Escherichia coli RNA degradosome: structure, function and relationship in other ribonucleolytic multienzyme complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Analysis of DNA microarrays using algorithms that employ rule-based expert knowledge

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Expression of the glucose transporter gene, ptsG, is regulated at the mRNA degradation step in response to glycolytic flux in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Significance analysis of microarrays applied to the ionizing radiation response

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Opening the iron box: transcriptional metalloregulation by the Fur protein.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Roles of polyadenylation and nucleolytic cleavage in the filamentous phage mRNA processing and decay pathways in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

mRNA degradation. A tale of poly(A) and multiprotein machines.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Appropriate Expression of Filamentous Phage f1 DNA Replication Genes II and X Requires RNase E-Dependent Processing and Separate mRNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Coordinated Repression In Vitro of the Divergent fepA-fes Promoters of Escherichia coli by the Iron Uptake Regulation (Fur) Protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

The complete genome sequence of Escherichia coli K-12

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Genes and proteins of Escherichia coli K-12 (GenProtEC)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Proteins associated with RNase E in a multicomponent ribonucleolytic complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Osmotic regulation of rpoS-dependent genes in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Evidence for an RNA binding region in the Escherichia coli processing endoribonuclease RNase E.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Inactivation of the ribonucleic acid-processing enzyme ribonuclease E blocks cell division

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Trehalose synthesis genes are controlled by the putative sigma factor encoded by rpoS and are involved in stationary-phase thermotolerance in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Glyceraldehyde 3-phosphate dehydrogenase mutants of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

RNase E, an RNA processing enzyme from Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Gene affecting longevity of messenger RNA: A mutant ofEscherichia coli with altered mRNA stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double-stranded RNA independent of the degradosome-assembling region of RNase E.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Escherichia coli RNase E has a role in the decay of bacteriophage T4 mRNA.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

rhlB, a new Escherichia coli K-12 gene with an RNA helicase-like protein sequence motif, one of at least five such possible genes in a prokaryote.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365694

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

27 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

TheEscherichia coliRNA degradosome: structure, function and relationship to other ribonucleolytic multienyzme complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

Degradation of mRNA in Escherichia coli: an old problem with some new twists

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

Polyphosphate kinase is a component of the Escherichia coli RNA degradosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

RNase E cleaves at multiple sites in bubble regions of RNA I stem loops yielding products that dissociate differentially from the enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

Isolation and characterization of Escherichia coli mutants defective in enzymes of glycolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0308747101

21 January 2018

Identifiers

DOI

10.1073/PNAS.0308747101

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zjpvafhubbbenexfst7qyq6364

30 July 2022

release_zjpvafhubbbenexfst7qyq6364

ADS bibcode

2004PNAS..101.2758B

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zjpvafhubbbenexfst7qyq6364

30 July 2022

https://api.fatcat.wiki/v0/release/zjpvafhubbbenexfst7qyq6364

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/zjpvafhubbbenexfst7qyq6364

PubMed publication ID

1 reference

30 July 2022