Cooperative recruitment of HMGB1 during V(D)J recombination through interactions with RAG1 and DNA. (Q36684764)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23325855%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

Cooperative recruitment of HMGB1 during V(D)J recombination through interactions with RAG1 and DNA (English)

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22 February 2020

1

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22 February 2020

author name string

Elizabeth Corbett

series ordinal

2

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22 February 2020

Fabian Ortega

series ordinal

3

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22 February 2020

David G Schatz

series ordinal

4

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22 February 2020

language of work or name

English

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publication date

15 January 2013

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22 February 2020

number of pages

13

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inferred from page(s)

published in

Nucleic Acids Research

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22 February 2020

volume

41

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22 February 2020

issue

5

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22 February 2020

page(s)

3289-3301

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Creative Commons Attribution-NonCommercial 3.0 Unported

22 February 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

RAG and HMGB1 create a large bend in the 23RSS in the V(D)J recombination synaptic complexes.

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Localized epigenetic changes induced by DH recombination restricts recombinase to DJH junctions

30 September 2017

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V(D)J Recombination: Mechanisms of Initiation

30 September 2017

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HU Binding to a DNA Four-Way Junction Probed by Förster Resonance Energy Transfer

30 September 2017

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Tail-Mediated Collapse of HMGB1 Is Dynamic and Occurs via Differential Binding of the Acidic Tail to the A and B Domains

30 September 2017

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The in vivo pattern of binding of RAG1 and RAG2 to antigen receptor loci.

30 September 2017

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The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway

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HMGB proteins: interactions with DNA and chromatin

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Initial stages of V(D)J recombination: the organization of RAG1/2 and RSS DNA in the postcleavage complex

30 September 2017

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Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis

30 September 2017

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A non-sequence-specific DNA binding mode of RAG1 is inhibited by RAG2

30 September 2017

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Quantitative analyses of RAG-RSS interactions and conformations revealed by atomic force microscopy

30 September 2017

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Mechanism of high-mobility group protein B enhancement of progesterone receptor sequence-specific DNA binding.

30 September 2017

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Mapping intramolecular interactions between domains in HMGB1 using a tail-truncation approach.

30 September 2017

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The beyond 12/23 restriction is imposed at the nicking and pairing steps of DNA cleavage during V(D)J recombination

30 September 2017

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GR and HMGB1 interact only within chromatin and influence each other's residence time

30 September 2017

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Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins

30 September 2017

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30 September 2017

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HMGB proteins and gene expression

30 September 2017

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Self-association and conformational properties of RAG1: implications for formation of the V(D)J recombinase.

30 September 2017

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The central domain of core RAG1 preferentially recognizes single-stranded recombination signal sequence heptamer

30 September 2017

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RAG1-DNA binding in V(D)J recombination. Specificity and DNA-induced conformational changes revealed by fluorescence and CD spectroscopy

30 September 2017

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A RAG-1/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals

30 September 2017

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Alexa and Oregon Green dyes as fluorescence anisotropy probes for measuring protein-protein and protein-nucleic acid interactions.

30 September 2017

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Efficient specific DNA binding by p53 requires both its central and C-terminal domains as revealed by studies with high-mobility group 1 protein

30 September 2017

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Release of chromatin protein HMGB1 by necrotic cells triggers inflammation

30 September 2017

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The C-terminal extension (CTE) of the nuclear hormone receptor DNA binding domain determines interactions and functional response to the HMGB-1/-2 co-regulatory proteins.

30 September 2017

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Fine structure and activity of discrete RAG-HMG complexes on V(D)J recombination signals

30 September 2017

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Comparative analysis of the influence of the high-mobility group box 1 protein on DNA binding and transcriptional activation by the androgen, glucocorticoid, progesterone and mineralocorticoid receptors

30 September 2017

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Reduced fertility and spermatogenesis defects in mice lacking chromosomal protein Hmgb2

30 September 2017

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A C-terminal region of RAG1 contacts the coding DNA during V(D)J recombination.

30 September 2017

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Phage display screening reveals an association between germline-specific transcription factor Oct-4 and multiple cellular proteins

30 September 2017

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DNA binding by single HMG box model proteins

30 September 2017

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Definition of minimal domains of interaction within the recombination-activating genes 1 and 2 recombinase complex

30 September 2017

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Mutations of acidic residues in RAG1 define the active site of the V(D)J recombinase

30 September 2017

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Mutational analysis of RAG1 and RAG2 identifies three catalytic amino acids in RAG1 critical for both cleavage steps of V(D)J recombination

30 September 2017

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The RAG1 homeodomain recruits HMG1 and HMG2 to facilitate recombination signal sequence binding and to enhance the intrinsic DNA-bending activity of RAG1-RAG2

30 September 2017

1 reference

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A dimer of the lymphoid protein RAG1 recognizes the recombination signal sequence and the complex stably incorporates the high mobility group protein HMG2.

30 September 2017

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RAG1 and RAG2 cooperate in specific binding to the recombination signal sequence in vitro

30 September 2017

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V(D)J recombination signal recognition: distinct, overlapping DNA-protein contacts in complexes containing RAG1 with and without RAG2.

30 September 2017

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Distinct roles of RAG1 and RAG2 in binding the V(D)J recombination signal sequences

30 September 2017

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High-mobility group chromatin proteins 1 and 2 functionally interact with steroid hormone receptors to enhance their DNA binding in vitro and transcriptional activity in mammalian cells

30 September 2017

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High mobility group protein-1 (HMG-1) is a unique activator of p53

30 September 2017

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Stimulation of V(D)J cleavage by high mobility group proteins

30 September 2017

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RAG1 and RAG2 form a stable postcleavage synaptic complex with DNA containing signal ends in V(D)J recombination

30 September 2017

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HMG1 interacts with HOX proteins and enhances their DNA binding and transcriptional activation

30 September 2017

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Distinct DNA sequence and structure requirements for the two steps of V(D)J recombination signal cleavage

30 September 2017

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The RAG1 and RAG2 proteins establish the 12/23 rule in V(D)J recombination

30 September 2017

1 reference

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Initiation of V(D)J recombination in vitro obeying the 12/23 rule

30 September 2017

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Expression and V(D)J recombination activity of mutated RAG-1 proteins

30 September 2017

1 reference

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The DNA-bending protein HMG-1 enhances progesterone receptor binding to its target DNA sequences

30 September 2017

1 reference

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Cell cycle regulation of V(D)J recombination-activating protein RAG-2.

30 September 2017

1 reference

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The high mobility group protein HMG1 can reversibly inhibit class II gene transcription by interaction with the TATA-binding protein

30 September 2017

1 reference

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High mobility group protein 2 functionally interacts with the POU domains of octamer transcription factors

30 September 2017

1 reference

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rag-1 and rag-2 are components of a high-molecular-weight complex, and association of rag-2 with this complex is rag-1 dependent

30 September 2017

1 reference

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The V(D)J recombination activating gene, RAG-1.

30 September 2017

1 reference

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RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination

30 September 2017

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Non-random-coil behavior as a consequence of extensive PPII structure in the denatured state.

30 September 2017

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Analysis of protein-protein interactions

28 June 2018

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RAG and HMGB1 proteins: purification and biochemical analysis of recombination signal complexes.

5 September 2018

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Ubiquitylation of RAG-2 by Skp2-SCF links destruction of the V(D)J recombinase to the cell cycle

5 September 2018

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Nature of full-length HMGB1 binding to cisplatin-modified DNA.

5 September 2018

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Identification of two catalytic residues in RAG1 that define a single active site within the RAG1/RAG2 protein complex.

5 September 2018

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HMG box proteins bind to four-way DNA junctions in their open conformation

5 September 2018

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5 September 2018

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Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps

5 September 2018

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The homeodomain region of Rag-1 reveals the parallel mechanisms of bacterial and V(D)J recombination

5 September 2018

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Principles of Fluorescence Spectroscopy

20 October 2018

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Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1461

Definition of a large region of RAG1 that is important for coimmunoprecipitation of RAG2

21 January 2018

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12 December 2020

Identification of two topologically independent domains in RAG1 and their role in macromolecular interactions relevant to V(D)J recombination

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12 December 2020

Increased DNA-bending activity and higher affinity DNA binding of high mobility group protein HMG-1 prepared without acids

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12 December 2020

High Mobility Group Protein 1 Interacts Specifically with the Core Domain of Human TATA Box-binding Protein and Interferes with Transcription Factor IIB within the Pre-initiation Complex

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKS1461

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23325855%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23325855%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

23325855

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23325855%20AND%20SRC:MED&resulttype=core&format=json