Five repair pathways in one context: chromatin modification during DNA repair (Q36579359)

15 August 2017

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title

Five repair pathways in one context: chromatin modification during DNA repair (English)

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15 August 2017

Yeganeh Ataian

1

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15 August 2017

Jocelyn E Krebs

series ordinal

2

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15 August 2017

publication date

1 August 2006

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Biochemistry and Cell Biology

15 August 2017

published in

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15 August 2017

volume

84

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15 August 2017

issue

4

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15 August 2017

page(s)

490-504

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Homologous recombination is involved in transcription-coupled repair of UV damage in Saccharomyces cerevisiae

15 August 2017

cites work

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Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae

21 January 2018

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Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

21 January 2018

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Deciphering the transcriptional histone acetylation code for a human gene

21 January 2018

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New insights into the mechanism of homologous recombination in yeast

21 January 2018

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Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes

21 January 2018

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Base excision repair in nucleosomes lacking histone tails.

21 January 2018

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Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair.

21 January 2018

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Removal of promoter nucleosomes by disassembly rather than sliding in vivo

21 January 2018

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Enzymology of mitochondrial base excision repair

21 January 2018

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Abasic sites in DNA: repair and biological consequences in Saccharomyces cerevisiae

21 January 2018

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Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

21 January 2018

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Chromatin remodeling complexes: strength in diversity, precision through specialization

21 January 2018

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Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair

21 January 2018

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Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae

21 January 2018

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gamma-H2AX dephosphorylation by protein phosphatase 2A facilitates DNA double-strand break repair

21 January 2018

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The yeast rDNA locus: a model system to study DNA repair in chromatin

21 January 2018

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Repair-independent chromatin assembly onto active ribosomal genes in yeast after UV irradiation.

21 January 2018

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Nonhomologous end joining in yeast

21 January 2018

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Dynamics of chromatin during the repair of DNA double-strand breaks.

21 January 2018

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A role for Saccharomyces cerevisiae histone H2A in DNA repair.

21 January 2018

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Binding of chromatin-modifying activities to phosphorylated histone H2A at DNA damage sites

21 January 2018

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Non-homologous end-joining factors of Saccharomyces cerevisiae

21 January 2018

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Repair of oxidative damage in mitochondrial DNA of Saccharomyces cerevisiae: involvement of the MSH1-dependent pathway.

21 January 2018

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The role of mismatch repair in the prevention of base pair mutations in Saccharomyces cerevisiae

21 January 2018

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Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

21 January 2018

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Mechanism of open complex and dual incision formation by human nucleotide excision repair factors

21 January 2018

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Linking histone deacetylation with the repair of DNA breaks

21 January 2018

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Roles for Gcn5p and Ada2p in transcription and nucleotide excision repair at the Saccharomyces cerevisiae MET16 gene

21 January 2018

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Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus

21 January 2018

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Role of base flipping in specific recognition of damaged DNA by repair enzymes.

21 January 2018

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The many faces of chromatin remodeling: SWItching beyond transcription

21 January 2018

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Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase.

21 January 2018

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Repair of oxidized DNA bases in the yeast Saccharomyces cerevisiae

21 January 2018

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Nucleotide excision repair in chromatin and the right of entry

21 January 2018

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When repair meets chromatin. First in series on chromatin dynamics

21 January 2018

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Local action of the chromatin assembly factor CAF-1 at sites of nucleotide excision repair in vivo

21 January 2018

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Complex formation with damage recognition protein Rad14 is essential for Saccharomyces cerevisiae Rad1-Rad10 nuclease to perform its function in nucleotide excision repair in vivo

21 January 2018

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Yeast DNA-repair gene RAD14 encodes a zinc metalloprotein with affinity for ultraviolet-damaged DNA.

21 January 2018

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RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription

21 January 2018

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Reconstitution of yeast nucleotide excision repair with purified Rad proteins, replication protein A, and transcription factor TFIIH.

21 January 2018

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Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome

21 January 2018

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RAD26, the yeast homolog of human Cockayne's syndrome group B gene, encodes a DNA-dependent ATPase

21 January 2018

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Yeast Rad7-Rad16 Complex, Specific for the Nucleotide Excision Repair of the Nontranscribed DNA Strand, Is an ATP-dependent DNA Damage Sensor

21 January 2018

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The DNA-dependent ATPase Activity of Yeast Nucleotide Excision Repair Factor 4 and Its Role in DNA Damage Recognition

21 January 2018

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Partners and pathwaysrepairing a double-strand break.

21 January 2018

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Yeast excision repair gene RAD2 encodes a single-stranded DNA endonuclease

21 January 2018

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Saccharomyces cerevisiae histone H2A Ser122 facilitates DNA repair

21 January 2018

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Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes.

21 January 2018

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Variation in efficiency of DNA mismatch repair at different sites in the yeast genome

21 January 2018

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RPA involvement in the damage-recognition and incision steps of nucleotide excision repair

21 January 2018

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Mechanism of DNA double-strand break repair by non-homologous end joining

21 January 2018

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RNA polymerase II subunit Rpb9 regulates transcription elongation in vivo.

21 January 2018

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Genome maintenance mechanisms for preventing cancer

21 January 2018

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Dissecting the regulatory circuitry of a eukaryotic genome

21 January 2018

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Molecular mechanisms of DNA mismatch repair

21 January 2018

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Human nucleotide excision nuclease removes thymine dimers from DNA by incising the 22nd phosphodiester bond 5' and the 6th phosphodiester bond 3' to the photodimer

21 January 2018

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ATP-dependent chromatin-remodeling complexes in DNA double-strand break repair: remodeling, pairing and (re)pairing

21 January 2018

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Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin

21 January 2018

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Saccharomyces cerevisiae Sin3p facilitates DNA double-strand break repair

21 January 2018

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In and out: histone variant exchange in chromatin

21 January 2018

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Chromatin remodeling complexes: ATP-dependent machines in action

21 January 2018

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Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I.

21 January 2018

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A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery

21 January 2018

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A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin

21 January 2018

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SWRred not shaken; mixing the histones

21 January 2018

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A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.

21 January 2018

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Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions

21 January 2018

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Replication protein A interactions with DNA. III. Molecular basis of recognition of damaged DNA.

21 January 2018

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Requirement for yeast RAD26, a homolog of the human CSB gene, in elongation by RNA polymerase II

21 January 2018

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Yeast RAD26, a homolog of the human CSB gene, functions independently of nucleotide excision repair and base excision repair in promoting transcription through damaged bases

21 January 2018

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Nucleosome structure and repair of N-methylpurines in the GAL1-10 genes of Saccharomyces cerevisiae

21 January 2018

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Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae

21 January 2018

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Dissecting transcription-coupled and global genomic repair in the chromatin of yeast GAL1-10 genes

21 January 2018

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Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling

21 January 2018

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Instability and decay of the primary structure of DNA

21 January 2018

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Suppression of spontaneous mutagenesis in human cells by DNA base excision-repair

21 January 2018

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The yeast histone chaperone chromatin assembly factor 1 protects against double-strand DNA-damaging agents

21 January 2018

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RNA Polymerase II Transcription Inhibits DNA Repair by Photolyase in the Transcribed Strand of Active Yeast Genes

21 January 2018

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Chromatin and the DNA damage response

21 January 2018

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The diverse functions of histone lysine methylation

21 January 2018

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Base excision repair in yeast and mammals

21 January 2018

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ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex

21 January 2018

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Histone modifications and DNA double-strand break repair

21 January 2018

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INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair.

21 January 2018

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Reconstitution of human DNA repair excision nuclease in a highly defined system

21 January 2018

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Characterization of reaction intermediates of human excision repair nuclease.

21 January 2018

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Repair of plasmid and genomic DNA in a rad7 delta mutant of yeast

21 January 2018

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Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability.

21 January 2018

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Histones and histone modifications

21 January 2018

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Transcription, nucleosome positioning and protein binding modulate nucleotide excision repair of the Saccharomyces cerevisiae MET17 promoter.

21 January 2018

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DNA repair genes and proteins of Saccharomyces cerevisiae

21 January 2018

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Histone H3 and the histone acetyltransferase Hat1p contribute to DNA double-strand break repair

21 January 2018

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Activation of the DNA damage checkpoint in yeast lacking the histone chaperone anti-silencing function 1.

21 January 2018

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Nucleotide excision repair in chromatin: the shape of things to come

21 January 2018

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The yeast RAD7 and RAD16 genes are required for postincision events during nucleotide excision repair. In vitro and in vivo studies with rad7 and rad16 mutants and purification of a Rad7/Rad16-containing protein complex

21 January 2018

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Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair.

21 January 2018

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Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter

21 January 2018

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Megabase chromatin domains involved in DNA double-strand breaks in vivo

21 January 2018

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Enzymatic photoreactivation: 50 years and counting

21 January 2018

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DNA mismatch repair: molecular mechanisms and biological function

21 January 2018

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Molecular mechanism of transcription-repair coupling.

21 January 2018

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Involvement of actin-related proteins in ATP-dependent chromatin remodeling.

21 January 2018

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The yeast chromatin remodeler RSC complex facilitates end joining repair of DNA double-strand breaks

21 January 2018

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Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break

21 January 2018

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Site-specific DNA repair at the nucleosome level in a yeast minichromosome.

21 January 2018

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Rad54, a Swi2/Snf2-like recombinational repair protein, disassembles Rad51:dsDNA filaments

21 January 2018

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DNA length dependence of the single-strand annealing pathway and the role of Saccharomyces cerevisiae RAD59 in double-strand break repair

21 January 2018

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In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination.

21 January 2018

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Yeast Rad55 and Rad57 proteins form a heterodimer that functions with replication protein A to promote DNA strand exchange by Rad51 recombinase

21 January 2018

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RAD3 protein of Saccharomyces cerevisiae is a DNA helicase

21 January 2018

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Recombination factors of Saccharomyces cerevisiae

21 January 2018

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Mechanisms of transcription-coupled DNA repair

21 January 2018

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Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription

21 January 2018

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Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair

21 January 2018

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Localized histone acetylation and deacetylation triggered by the homologous recombination pathway of double-strand DNA repair.

21 January 2018

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Excision repair at the level of the nucleotide in the Saccharomyces cerevisiae MFA2 gene: mapping of where enhanced repair in the transcribed strand begins or ends and identification of only a partial rad16 requisite for repairing upstream control s

21 January 2018

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The Saccharomyces cerevisiae histone acetyltransferase Gcn5 has a role in the photoreactivation and nucleotide excision repair of UV-induced cyclobutane pyrimidine dimers in the MFA2 gene

21 January 2018

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Histone acetylation, chromatin remodelling, transcription and nucleotide excision repair in S. cerevisiae: studies with two model genes

21 January 2018

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Light and dark in chromatin repair: repair of UV-induced DNA lesions by photolyase and nucleotide excision repair

21 January 2018

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Repair of UV lesions in nucleosomes--intrinsic properties and remodeling

21 January 2018

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RNA polymerase II transcription suppresses nucleosomal modulation of UV-induced (6-4) photoproduct and cyclobutane pyrimidine dimer repair in yeast

21 January 2018

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Association of CBP/p300 acetylase and thymine DNA glycosylase links DNA repair and transcription

21 January 2018

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Yeast DNA repair and recombination proteins Rad1 and Rad10 constitute a single-stranded-DNA endonuclease

21 January 2018

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Structural characterization of RNA polymerase II complexes arrested by a cyclobutane pyrimidine dimer in the transcribed strand of template DNA.

21 January 2018

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The in vivo functions of ATP-dependent chromatin-remodelling factors

21 January 2018

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Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae

21 January 2018

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DNA damage response pathway uses histone modification to assemble a double-strand break-specific cohesin domain

21 January 2018

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ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes

21 January 2018

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Regulation of NuA4 histone acetyltransferase activity in transcription and DNA repair by phosphorylation of histone H4.

21 January 2018

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ATP-dependent chromatin remodeling and DNA double-strand break repair.

21 January 2018

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The histone code at DNA breaks: a guide to repair?

21 January 2018

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Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair

21 January 2018

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Nucleotide excision repair and its interplay with transcription

21 January 2018

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The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae

21 January 2018

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Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene

21 January 2018

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ATP-dependent and ATP-independent roles for the Rad54 chromatin remodeling enzyme during recombinational repair of a DNA double strand break

21 January 2018

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Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast

21 January 2018

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A role for FEN-1 in nonhomologous DNA end joining: the order of strand annealing and nucleolytic processing events

21 January 2018

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DNA repair in a chromatin environment

21 January 2018

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Roles of Rad23 protein in yeast nucleotide excision repair

21 January 2018

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The yeast Rad7/Rad16/Abf1 complex generates superhelical torsion in DNA that is required for nucleotide excision repair

21 January 2018

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Histone acetylation, chromatin remodelling and nucleotide excision repair: hint from the study on MFA2 in Saccharomyces cerevisiae

21 January 2018

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UV irradiation stimulates histone acetylation and chromatin remodeling at a repressed yeast locus

21 January 2018

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Evidence for involvement of HMGB1 protein in human DNA mismatch repair

21 January 2018

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Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

21 January 2018

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Recognition of DNA alterations by the mismatch repair system

21 January 2018

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21 January 2018

Identifiers

DOI

10.1139/O06-075

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15 August 2017

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