Illuminating the mechanistic roles of enzyme conformational dynamics (Q36156767)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17989222%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

title

Illuminating the mechanistic roles of enzyme conformational dynamics (English)

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9 January 2020

2

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9 January 2020

Jhih-Wei Chu

6

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9 January 2020

author name string

Jeffrey A Hanson

1

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9 January 2020

Lucas P Watkins

3

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9 January 2020

Sucharita Bhattacharyya

4

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9 January 2020

Jason Brokaw

5

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9 January 2020

Haw Yang

7

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9 January 2020

language of work or name

English

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publication date

7 November 2007

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9 January 2020

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

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published in

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9 January 2020

volume

104

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9 January 2020

issue

46

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9 January 2020

page(s)

18055-18060

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An NMR perspective on enzyme dynamics

9 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Relating protein motion to catalysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Evolutionary relationships and structural mechanisms of AAA+ proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Single-molecule fluorescence studies of protein folding and conformational dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Roles of static and dynamic domains in stability and catalysis of adenylate kinase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

The Database of Macromolecular Motions: new features added at the decade mark

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Intrinsic dynamics of an enzyme underlies catalysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Statistical evaluation of single nano-object fluorescence.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Is allostery an intrinsic property of all dynamic proteins?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Information bounds and optimal analysis of dynamic single molecule measurements

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Protein conformational dynamics probed by single-molecule electron transfer.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Molecular dynamics simulations of biomolecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Nucleoside monophosphate kinases: structure, mechanism, and substrate specificity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Ancient divergence of long and short isoforms of adenylate kinase: molecular evolution of the nucleoside monophosphate kinase family

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Substrate binding causes movement in the ATP binding domain of Escherichia coli adenylate kinase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Movie of the structural changes during a catalytic cycle of nucleoside monophosphate kinases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Mechanism of adenylate kinase: site-directed mutagenesis versus X-ray and NMR.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

The Energy Landscapes and Motions of Proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Binding Energy, Specificity, and Enzymic Catalysis: The Circe Effect

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Conservation of mus-ms enzyme motions in the apo- and substrate-mimicked state

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Study of global motions in proteins by weighted masses molecular dynamics: adenylate kinase as a test case.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Domain closure in adenylate kinase.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Dynamics of the flexible loop of triosephosphate isomerase: the loop motion is not ligand gated

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Fluorescence and NMR investigations on the ligand binding properties of adenylate kinases.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

4 Derivation of initial velocity and isotope exchange rate equations

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Molecular dynamics of apo-adenylate kinase: a distance replica exchange method for the free energy of conformational fluctuations

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Detection of intensity change points in time-resolved single-molecule measurements

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Quantitative single-molecule conformational distributions: a case study with poly-(L-proline).

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Crystal structure of ADP/AMP complex of Escherichia coli adenylate kinase

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Structural dynamics of individual Holliday junctions.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

The time scale of the catalytic loop motion in triosephosphate isomerase

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2084295

Identification and purification of an adenylate kinase-associated protein that influences the thermolability of adenylate kinase from a temperature-sensitive adk mutant of Escherichia coli

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17989222

12 December 2020

inferred from PubMed ID database lookup

Initial Velocity and Equilibrium Kinetics of Myokinase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17989222

12 December 2020

inferred from PubMed ID database lookup

A Single-Molecule Study of RNA Catalysis and Folding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17989222

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0708600104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17989222%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

0 references

1 reference

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9 January 2020

PubMed publication ID

17989222

1 reference