PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells (Q36116924)

12 August 2017

5 references

22 October 2019

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29 July 2022

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells (English)

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12 August 2017

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Henry Lam

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Ruedi Aebersold

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Johan Malmstrom

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Bernd Bodenmiller

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Alexander Schmidt

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Bertran Gerrits

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Oliver Rinner

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Lukas N Mueller

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Molecular Systems Biology

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12 August 2017

139

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Creative Commons Attribution-NonCommercial-NoDerivs 2.5 Generic

12 August 2017

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22 October 2019

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

29 July 2022

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2 October 2017

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Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

2 October 2017

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An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells

2 October 2017

1 reference

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Large-scale mapping of human protein-protein interactions by mass spectrometry

2 October 2017

1 reference

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

2 October 2017

1 reference

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Development and validation of a spectral library searching method for peptide identification from MS/MS.

2 October 2017

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PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways

2 October 2017

1 reference

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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

2 October 2017

1 reference

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A probability-based approach for high-throughput protein phosphorylation analysis and site localization

2 October 2017

1 reference

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UniPep--a database for human N-linked glycosites: a resource for biomarker discovery

2 October 2017

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A uniform proteomics MS/MS analysis platform utilizing open XML file formats

2 October 2017

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Mass spectrometry and protein analysis

2 October 2017

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The Gaggle: an open-source software system for integrating bioinformatics software and data sources

2 October 2017

1 reference

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FlyBase: anatomical data, images and queries

2 October 2017

1 reference

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From genomics to chemical genomics: new developments in KEGG

2 October 2017

1 reference

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An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

2 October 2017

1 reference

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State-of-the-art in phosphoproteomics

2 October 2017

1 reference

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Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry

2 October 2017

1 reference

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Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

2 October 2017

1 reference

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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

2 October 2017

1 reference

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Drosophila, the golden bug, emerges as a tool for human genetics

2 October 2017

1 reference

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Advances in protein complex analysis using mass spectrometry

2 October 2017

1 reference

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Upstream and downstream of mTOR

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Large-scale characterization of HeLa cell nuclear phosphoproteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

A protein interaction map of Drosophila melanogaster

2 October 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

2 October 2017

1 reference

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Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

2 October 2017

1 reference

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Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

2 October 2017

1 reference

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Mass spectrometry-based proteomics

2 October 2017

1 reference

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Insulin/IGF and target of rapamycin signaling: a TOR de force in growth control

2 October 2017

1 reference

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

2 October 2017

1 reference

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Genetic analysis of insulin signaling in Drosophila

2 October 2017

1 reference

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Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

2 October 2017

1 reference

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Functional organization of the yeast proteome by systematic analysis of protein complexes

2 October 2017

1 reference

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Systematic genetic analysis with ordered arrays of yeast deletion mutants

2 October 2017

1 reference

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Mass spectrometry in proteomics

2 October 2017

1 reference

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A systematic analysis of human disease-associated gene sequences in Drosophila melanogaster

2 October 2017

1 reference

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Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

2 October 2017

1 reference

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Genetic control of size in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Genome-wide location and function of DNA binding proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Signaling--2000 and beyond

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

A generic protein purification method for protein complex characterization and proteome exploration

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

High density synthetic oligonucleotide arrays

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Transforming gene product of Rous sarcoma virus phosphorylates tyrosine

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

A novel genetic system to detect protein-protein interactions

2 October 2017

1 reference

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A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

A systematic approach to the analysis of protein phosphorylation

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

5 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2063582

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

5 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17940529

12 December 2020

inferred from PubMed ID database lookup

The implications of proteolytic background for shotgun proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17940529

12 December 2020

inferred from PubMed ID database lookup

Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17940529

12 December 2020

inferred from PubMed ID database lookup

Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocin

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMSB4100182

7 January 2021

inferred from DOI database lookup

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMSB4100182

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/MSB4100182

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

17940529

1 reference