The effect of variation in the effective population size on the rate of adaptive molecular evolution in eukaryotes. (Q36054035)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22436998%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

title

The effect of variation in the effective population size on the rate of adaptive molecular evolution in eukaryotes (English)

1 reference

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26 January 2020

3

1 reference

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26 January 2020

Toni I Gossmann

series ordinal

1

1 reference

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26 January 2020

2

Peter D Keightley

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26 January 2020

publication date

21 March 2012

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Genome Biology and Evolution

26 January 2020

published in

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26 January 2020

volume

4

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26 January 2020

issue

5

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26 January 2020

page(s)

658-667

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Characterizing the Influence of Effective Population Size on the Rate of Adaptation: Gillespie’s Darwin Domain

26 January 2020

cites work

1 reference

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Phylogeographic patterns and demographic history of Schiedea globosa (Caryophyllaceae) on the Hawaiian Islands

2 October 2017

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Inference of Mutation Parameters and Selective Constraint in Mammalian Coding Sequences by Approximate Bayesian Computation

2 October 2017

1 reference

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Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species

2 October 2017

1 reference

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Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers

2 October 2017

1 reference

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Adaptation – not by sweeps alone

2 October 2017

1 reference

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Estimating the parameters of selection on nonsynonymous mutations in Drosophila pseudoobscura and D. miranda

2 October 2017

1 reference

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Genome wide analyses reveal little evidence for adaptive evolution in many plant species.

2 October 2017

1 reference

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Analysis of genetic inheritance in a family quartet by whole-genome sequencing

2 October 2017

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The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

2 October 2017

1 reference

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Evidence for pervasive adaptive protein evolution in wild mice

2 October 2017

1 reference

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The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

2 October 2017

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Quantifying adaptive evolution in the Drosophila immune system

2 October 2017

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Estimating selection intensity on synonymous codon usage in a nonequilibrium population

2 October 2017

1 reference

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Population genomics of domestic and wild yeasts

2 October 2017

1 reference

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Evidence for variation in the effective population size of animal mitochondrial DNA

2 October 2017

1 reference

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Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula

2 October 2017

1 reference

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Assessing the evolutionary impact of amino acid mutations in the human genome

2 October 2017

1 reference

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Molecular demographic history of the annual sunflowers Helianthus annuus and H. petiolaris--large effective population sizes and rates of long-term gene flow

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle

2 October 2017

1 reference

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Evolution of genes and genomes on the Drosophila phylogeny

2 October 2017

1 reference

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Genome-wide patterns of nucleotide polymorphism in domesticated rice

2 October 2017

1 reference

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Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Adaptive genic evolution in the Drosophila genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila

2 October 2017

1 reference

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

2 October 2017

1 reference

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Hearing silence: non-neutral evolution at synonymous sites in mammals

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Initial sequence of the chimpanzee genome and comparison with the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Evidence for domesticated and wild populations of Saccharomyces cerevisiae

2 October 2017

1 reference

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The scale of mutational variation in the murid genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

The pattern of polymorphism in Arabidopsis thaliana

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Patterns of selection on synonymous and nonsynonymous variants in Drosophila miranda

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Close split of sorghum and maize genome progenitors

2 October 2017

1 reference

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Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection

2 October 2017

1 reference

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The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: implications for the correlation between the synonymous substitution rate and codon usage bias

2 October 2017

1 reference

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Adaptive protein evolution in Drosophila

2 October 2017

1 reference

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Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila

2 October 2017

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

2 October 2017

1 reference

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Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations

2 October 2017

1 reference

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The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence

2 October 2017

1 reference

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Basic local alignment search tool

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

The 'effective number of codons' used in a gene

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Adaptive protein evolution at the Adh locus in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Studying patterns of recent evolution at synonymous sites and intronic sites in Drosophila melanogaster

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Changing effective population size and the McDonald-Kreitman test

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Estimating the rate of adaptive molecular evolution when the evolutionary divergence between species is small.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Determinants of Synonymous and Nonsynonymous Variability in Three Species of Drosophila

23 September 2018

1 reference

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Estimation of the Neutrality Index

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Natural selection on synonymous and nonsynonymous mutations shapes patterns of polymorphism in Populus tremula

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Synteny and Collinearity in Plant Genomes

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

The rate of adaptive evolution in enteric bacteria

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Human SNPs reveal no evidence of frequent positive selection

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

The effects of artificial selection on the maize genome

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

The genomic rate of adaptive amino acid substitution in Drosophila.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Accounting for background nucleotide composition when measuring codon usage bias

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

The cost of inbreeding in Arabidopsis.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

Deleterious mutations and the evolution of sex.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381672

DNA diversity in Hawaiian endemic plant Schiedea globosa

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22436998

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular evolution of functional genes on the mammalian Y chromosome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22436998

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVS027

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22436998%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22436998%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

PubMed publication ID

22436998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22436998%20AND%20SRC:MED&resulttype=core&format=json