Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV (Q35607001)

9 August 2017

title

Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV (English)

1 reference

9 August 2017

3

J Andrew McCammon

1 reference

9 August 2017

Ivaylo Ivanov

1

1 reference

9 August 2017

John A Tainer

series ordinal

2

1 reference

9 August 2017

language of work or name

English

0 references

publication date

22 January 2007

1 reference

Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

published in

1 reference

9 August 2017

volume

104

1 reference

9 August 2017

issue

5

1 reference

9 August 2017

page(s)

1465-1470

1 reference

Ab initio quantum chemical and mixed quantum mechanics/molecular mechanics (QM/MM) methods for studying enzymatic catalysis

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Phosphoryl transfer enzymes and hypervalent phosphorus chemistry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

How enzymes work: analysis by modern rate theory and computer simulations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Abasic sites in DNA: repair and biological consequences in Saccharomyces cerevisiae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Chemistry and biology of DNA repair

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

A mechanistic perspective on the chemistry of DNA repair glycosylases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

The role and perspective of ab initio molecular dynamics in the study of biological systems

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Binuclear Metallohydrolases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Structural and Functional Aspects of Metal Sites in Biology

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

The major human abasic endonuclease: formation, consequences and repair of abasic lesions in DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Abasic site recognition by two apurinic/apyrimidinic endonuclease families in DNA base excision repair: the 3' ends justify the means

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Dimetallic hydrolases and their models

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Unified Approach for Molecular Dynamics and Density-Functional Theory

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Density-functional exchange-energy approximation with correct asymptotic behavior

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Instability and decay of the primary structure of DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Determination of the free-energy change for repair of a DNA phosphodiester bond

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Interactions of Escherichia coli endonuclease IV and exonuclease III with abasic sites in DNA.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780068

Comparison of simple potential functions for simulating liquid water

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0603468104

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0603468104

Reversible multiple time scale molecular dynamics

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0603468104

Efficient pseudopotentials for plane-wave calculations

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17242363

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dynamical flexibility and proton transfer in the arginase active site probed by ab initio molecular dynamics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17242363

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Manganese Enzymes with Binuclear Active Sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17242363

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0603468104

1 reference

9 August 2017

0 references

1 reference

9 August 2017

1 reference