Liquid chromatography-mass spectrometry-based quantitative proteomics. (Q35111036)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21632532%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

review article

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title

Liquid chromatography-mass spectrometry-based quantitative proteomics (English)

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2 February 2020

0 references

2

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2 February 2020

Wei-Jun Qian

3

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2 February 2020

Vladislav A Petyuk

4

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2 February 2020

Richard D. Smith

5

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2 February 2020

author name string

Fang Xie

1

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2 February 2020

language of work or name

English

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publication date

1 June 2011

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Journal of Biological Chemistry

2 February 2020

published in

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2 February 2020

volume

286

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2 February 2020

issue

29

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2 February 2020

page(s)

25443-25449

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Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences

2 February 2020

cites work

1 reference

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Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics

9 July 2018

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Increased Selectivity, Analytical Precision, and Throughput in Targeted Proteomics

9 July 2018

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Options and considerations when selecting a quantitative proteomics strategy

9 July 2018

1 reference

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Decoding signalling networks by mass spectrometry-based proteomics

9 July 2018

1 reference

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Super-SILAC mix for quantitative proteomics of human tumor tissue

9 July 2018

1 reference

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Quantitation in mass-spectrometry-based proteomics

9 July 2018

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Current trends in quantitative proteomics

9 July 2018

1 reference

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Quantitative proteomics in biological research

9 July 2018

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Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry

9 July 2018

1 reference

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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

9 July 2018

1 reference

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18O2-labeling in quantitative proteomic strategies: a status report

9 July 2018

1 reference

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A simple procedure for effective quenching of trypsin activity and prevention of 18O-labeling back-exchange

9 July 2018

1 reference

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Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample

9 July 2018

1 reference

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Selected reaction monitoring for quantitative proteomics: a tutorial

9 July 2018

1 reference

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Quantitative phosphoproteomics by mass spectrometry: past, present, and future

9 July 2018

1 reference

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DAnTE: a statistical tool for quantitative analysis of -omics data.

9 July 2018

1 reference

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Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

The biological impact of mass-spectrometry-based proteomics

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Quantitative mass spectrometry in proteomics: a critical review

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

VIPER: an advanced software package to support high-throughput LC-MS peptide identification

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Improved method for differential expression proteomics using trypsin-catalyzed 18O labeling with a correction for labeling efficiency.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

PEPPeR, a platform for experimental proteomic pattern recognition.

9 July 2018

1 reference

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Mass spectrometry and protein analysis

9 July 2018

1 reference

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Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics

9 July 2018

1 reference

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Mass spectrometry-based proteomics turns quantitative

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules

9 July 2018

1 reference

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Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.

9 July 2018

1 reference

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Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Ion suppression in mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Effect of different solution flow rates on analyte ion signals in nano-ESI MS, or: when does ESI turn into nano-ESI?

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Dissection of proteolytic 18O labeling: endoprotease-catalyzed 16O-to-18O exchange of truncated peptide substrates.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

18O labeling: a tool for proteomics

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Effect of dynamic exclusion duration on spectral count based quantitative proteomics.

9 July 2018

1 reference

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Computational prediction of proteotypic peptides for quantitative proteomics.

27 September 2018

1 reference

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A method for automatically interpreting mass spectra of 18O-labeled isotopic clusters.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Absolute quantification of proteins in solutions and in polyacrylamide gels by mass spectrometry

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Minimizing resolution of isotopically coded peptides in comparative proteomics

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Proteolytic 18O labeling for comparative proteomics: evaluation of endoprotease Glu-C as the catalytic agent

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Fractionation of isotopically labeled peptides in quantitative proteomics

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138289

Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.R110.199703

Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.R110.199703

Isotope-labeled Protein Standards

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.R110.199703

The pros and cons of peptide-centric proteomics

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21632532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21632532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.R110.199703

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21632532%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21632532%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

21632532

1 reference