CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments (Q34974117)

5 August 2017

title

CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments (English)

1 reference

5 August 2017

1 reference

Eckart Bindewald

1

1 reference

5 August 2017

Thomas D Schneider

series ordinal

2

1 reference

5 August 2017

Bruce A Shapiro

series ordinal

3

1 reference

5 August 2017

language of work or name

English

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publication date

1 July 2006

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5 August 2017

published in

Nucleic Acids Research

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5 August 2017

volume

34

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5 August 2017

issue

Web Server issue

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5 August 2017

page(s)

W405-11

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RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

enoLOGOS: a versatile web tool for energy normalized sequence logos

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Rfam: annotating non-coding RNAs in complete genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

WebLogo: A Sequence Logo Generator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Rfam: an RNA family database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

5S Ribosomal RNA Database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Novel domains of the prokaryotic two-component signal transduction systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Crystal structure of the ribosome at 5.5 A resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Information analysis of Fis binding sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Metals, Motifs, and Recognition in the Crystal Structure of a 5S rRNA Domain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Inferring the conformation of RNA base pairs and triples from patterns of sequence variation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

The presence of codon-anticodon pairs in the acceptor stem of tRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

The tertiary structure of tRNA and the development of the genetic code

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Information content of binding sites on nucleotide sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Sequence logos: a new way to display consensus sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Inferring consensus structure from nucleic acid sequences.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Structural domains of transfer RNA molecules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Alanyl-tRNA synthetase crystal structure and design for acceptor-stem recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Information theory-based analysis of CYP2C19, CYP2D6 and CYP3A5 splicing mutations

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

MatrixPlot: visualizing sequence constraints

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Displaying the information contents of structural RNA alignments: the structure logos.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

Identification of base-triples in RNA using comparative sequence analysis.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538790

An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16845037

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Translational efficiency of transfer RNA's: uses of an extended anticodon

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16845037

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A simple structural feature is a major determinant of the identity of a transfer RNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16845037

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL269

1 reference

journals/nar/BindewaldSS06

5 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 August 2017

1 reference