Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX. (Q34841266)

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17 January 2020

title

Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX (English)

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17 January 2020

6

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17 January 2020

Mantek Yeung

7

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17 January 2020

Daniel Durocher

11

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17 January 2020

author name string

Rachel K Szilard

1

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17 January 2020

Pierre-Etienne Jacques

2

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17 January 2020

Louise Laramée

3

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17 January 2020

Benjamin Cheng

4

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17 January 2020

Sarah Galicia

5

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17 January 2020

Megan Mendez

8

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17 January 2020

Maxime Bergeron

9

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17 January 2020

François Robert

10

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17 January 2020

publication date

7 February 2010

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Nature Structural & Molecular Biology

17 January 2020

published in

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17 January 2020

volume

17

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17 January 2020

issue

3

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17 January 2020

page(s)

299-305

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The Saccharomyces cerevisiae Esc2 and Smc5-6 proteins promote sister chromatid junction-mediated intra-S repair

17 January 2020

cites work

1 reference

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Esc2 and Sgs1 act in functionally distinct branches of the homologous recombination repair pathway in Saccharomyces cerevisiae.

8 July 2018

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Activation of the G2/M-specific gene CLB2 requires multiple cell cycle signals

8 July 2018

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A screen for suppressors of gross chromosomal rearrangements identifies a conserved role for PLP in preventing DNA lesions

8 July 2018

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Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

8 July 2018

1 reference

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Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals

8 July 2018

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8 July 2018

Chromosome fragile sites

1 reference

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Replication fork barriers: pausing for a break or stalling for time?

8 July 2018

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Interplay between chromatin and trans-acting factors on the IME2 promoter upon induction of the gene at the onset of meiosis

8 July 2018

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The S. cerevisiae Rrm3p DNA helicase moves with the replication fork and affects replication of all yeast chromosomes

8 July 2018

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OriDB: a DNA replication origin database

8 July 2018

1 reference

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Genome-wide replication profiles of S-phase checkpoint mutants reveal fragile sites in yeast

8 July 2018

1 reference

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

8 July 2018

1 reference

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Cycles of chromosome instability are associated with a fragile site and are increased by defects in DNA replication and checkpoint controls in yeast

8 July 2018

1 reference

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Replisome instability, fork collapse, and gross chromosomal rearrangements arise synergistically from Mec1 kinase and RecQ helicase mutations

8 July 2018

1 reference

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Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning

8 July 2018

1 reference

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Genome-wide map of nucleosome acetylation and methylation in yeast

8 July 2018

1 reference

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Histone H2A phosphorylation in DNA double-strand break repair

8 July 2018

1 reference

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Global position and recruitment of HATs and HDACs in the yeast genome.

8 July 2018

1 reference

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Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break

8 July 2018

1 reference

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H2AX: the histone guardian of the genome

8 July 2018

1 reference

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The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae

8 July 2018

1 reference

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Saccharomyces cerevisiae Rrm3p DNA helicase promotes genome integrity by preventing replication fork stalling: viability of rrm3 cells requires the intra-S-phase checkpoint and fork restart activities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081315

The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081315

Yeast histone 2A serine 129 is essential for the efficient repair of checkpoint-blind DNA damage

8 July 2018

1 reference

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Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability.

8 July 2018

1 reference

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Histone acetylation regulates the time of replication origin firing

8 July 2018

1 reference

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Saccharomyces Rrm3p, a 5' to 3' DNA helicase that promotes replication fork progression through telomeric and subtelomeric DNA.

8 July 2018

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Two checkpoint complexes are independently recruited to sites of DNA damage in vivo

8 July 2018

1 reference

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Histone H2AX is phosphorylated in an ATR-dependent manner in response to replicational stress

8 July 2018

1 reference

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The DNA replication checkpoint response stabilizes stalled replication forks

8 July 2018

1 reference

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Rad52 forms DNA repair and recombination centers during S phase

8 July 2018

1 reference

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Break-induced replication: a review and an example in budding yeast

8 July 2018

1 reference

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DNA replication forks pause at silent origins near the HML locus in budding yeast

8 July 2018

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A new mathematical model for relative quantification in real-time RT-PCR

8 July 2018

1 reference

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A role for Saccharomyces cerevisiae histone H2A in DNA repair.

8 July 2018

1 reference

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Genome-wide location and function of DNA binding proteins

8 July 2018

1 reference

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Gene ontology: tool for the unification of biology

8 July 2018

1 reference

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ATR disruption leads to chromosomal fragmentation and early embryonic lethality

8 July 2018

1 reference

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Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081315

Recovery from DNA replicational stress is the essential function of the S-phase checkpoint pathway

8 July 2018

1 reference

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DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081315

Overexpression of a kinase-inactive ATR protein causes sensitivity to DNA-damaging agents and defects in cell cycle checkpoints

8 July 2018

1 reference

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Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters

8 July 2018

1 reference

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Mitotic checkpoint genes in budding yeast and the dependence of mitosis on DNA replication and repair

8 July 2018

1 reference

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Concerted deletions and inversions are caused by mitotic recombination between delta sequences in Saccharomyces cerevisiae

8 July 2018

1 reference

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Replication forks pause at yeast centromeres

8 July 2018

1 reference

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Galactose regulation in Saccharomyces cerevisiae. The enzymes encoded by the GAL7, 10, 1 cluster are co-ordinately controlled and separately translated

8 July 2018

1 reference

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Deletions of a tyrosine tRNA gene in S. cerevisiae

8 July 2018

1 reference

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Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae

8 July 2018

1 reference

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Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites.

26 October 2018

1 reference

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A central role for DNA replication forks in checkpoint activation and response

26 October 2018

1 reference

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Induction of genome instability by DNA damage in Saccharomyces cerevisiae

26 October 2018

1 reference

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ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones.

26 October 2018

1 reference

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Telomere dysfunction increases mutation rate and genomic instability

26 October 2018

1 reference

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A checkpoint regulates the rate of progression through S phase in S. cerevisiae in Response to DNA damage

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081315

DNA replication fork pause sites dependent on transcription

26 October 2018

1 reference

DNA rearrangements associated with a transposable element in yeast

31 March 2020

1 reference

Spk1/Rad53 is regulated by Mec1-dependent protein phosphorylation in DNA replication and damage checkpoint pathways

31 March 2020

1 reference

Saccharomyces cerevisiae ATM orthologue suppresses break-induced chromosome translocations

31 March 2020

2 references

https://pubmed.ncbi.nlm.nih.gov/20139982

31 March 2020

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NSMB.1754

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20139982%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20139982%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

20139982

1 reference